The molecular era of protein S-acylation: spotlight on structure, mechanisms, and dynamics.

abstract：:The demonstration that ribosomal peptide synthesis is a ribozyme-catalyzed reaction makes it almost certain that there was once an RNA World. The central problem for origin-of-life studies, therefore, is to understand how a protein-free RNA World became established on the primitive Earth. We first review the literatur...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Orgel LE

更新日期：2004-03-01 00:00:00

abstract：:Adaptive mutation is a generic term for processes that allow individual cells of nonproliferating cell populations to acquire advantageous mutations and thereby to overcome the strong selective pressure of proliferation-limiting environmental conditions. Prerequisites for an occurrence of adaptive mutation are that th...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Heidenreich E

更新日期：2007-07-01 00:00:00

abstract：:Activation of cell growth leads to the multiple phosphorylation of 40S ribosomal protein S6. The kinase responsible for controling this event is termed p70s6k/p85s6k. Both isoforms of the kinase are derived from a common gene activated by a complex set of phosphorylation events; each resides in a unique cellular compa...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Ferrari S,Thomas G

更新日期：1994-01-01 00:00:00

abstract：:Low-copy nuclear genes in plants are a rich source of phylogenetic information. They hold a great potential to improve the robustness of phylogenetic reconstruction at all taxonomic levels, especially where universal markers such as cpDNA and nrDNA are unable to generate strong phylogenetic hypotheses. Low-copy nuclea...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Sang T

更新日期：2002-01-01 00:00:00

abstract：:The eukaryotic MCM2-7 complex is recruited onto origins of replication during the G1 phase of the cell cycle and acts as the main helicase at the replication fork during the S phase. Over the last few years a number of structural reports on MCM proteins using both electron microscopy and protein crystallography have b...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Costa A,Onesti S

更新日期：2009-09-01 00:00:00

abstract：:Matrix metalloproteinases (MMPs) constitute a family of more than 20 endopeptidases. Identification of specific matrix and non-matrix components as MMP substrates showed that, aside from their initial role as extracellular matrix modifiers, MMPs play significant roles in highly complex processes such as the regulation...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Cauwe B,Van den Steen PE,Opdenakker G

更新日期：2007-05-01 00:00:00

abstract：:Determining the mechanisms of enzymatic regulation is central to the study of cellular metabolism. Regulation of enzyme activity via polymerization-mediated strategies has been shown to be widespread, and plays a vital role in mediating cellular homeostasis. In this review, we begin with an overview of the filamentati...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Aughey GN,Liu JL

更新日期：2015-07-01 00:00:00

abstract：:Regulation of eukaryotic gene expression is far more complex than one might have imagined 30 years ago. However, progress towards understanding gene regulatory mechanisms has been rapid and comprehensive, which has made the integration of detailed observations into broadly connected concepts a challenge. This review a...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Venters BJ,Pugh BF

更新日期：2009-06-01 00:00:00

abstract：:O-linked β-N-acetylglucosamine (O-GlcNAc) is a regulatory post-translational modification of intracellular proteins. The dynamic and inducible cycling of the modification is governed by O-GlcNAc transferase (OGT) and O-GlcNAcase (OGA) in response to UDP-GlcNAc levels in the hexosamine biosynthetic pathway (HBP). Due t...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Vaidyanathan K,Durning S,Wells L

更新日期：2014-03-01 00:00:00

abstract：:Studies with biomimetic models can yield considerable insight into mechanisms of enzymatic catalysis. The discussion above indicates how such information has been important in the cases of flavoproteins, hemoproteins, and, to a lesser extent, the copper protein dopamine beta-hydroxylase. Some of the moieties that we g...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Guengerich FP

更新日期：1990-01-01 00:00:00

abstract：:This review focuses on how microbes live on CO as a sole source of carbon and energy and with CO by generating carbon monoxide as a metabolic intermediate. The use of CO is a property of organisms that use the Wood-L jungdahl pathway of autotrophic growth. The review discusses when CO metabolism originated, when and h...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Ragsdale SW

更新日期：2004-05-01 00:00:00

abstract：:Fibronectin is a large vertebrate glycoprotein that is found in soluble and insoluble forms and involved in diverse processes. Protomeric fibronectin is a dimer of subunits, each of which comprises 29-31 modules - 12 type I, two type II and 15-17 type III. Plasma fibronectin is secreted by hepatocytes and circulates i...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Maurer LM,Ma W,Mosher DF

更新日期：2015-07-01 00:00:00

abstract：:As we learn more about the biology of the Toll-like receptors (TLRs), a wide range of molecules that can activate this fascinating family of pattern recognition receptors emerges. In addition to conserved pathogenic components, endogenous danger signals created upon tissue damage are also sensed by TLRs. Detection of ...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Bryant CE,Gay NJ,Heymans S,Sacre S,Schaefer L,Midwood KS

更新日期：2015-01-01 00:00:00

abstract：:Genome maintenance activities including DNA repair, cell division cycle control, and checkpoint signaling pathways preserve genome integrity and prevent disease. Defects in these pathways cause birth defects, neurodegeneration, premature aging, and cancer. Recent technical advances in functional genomic approaches suc...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Bansbach CE,Cortez D

更新日期：2011-08-01 00:00:00

abstract：:Aptamers are single-stranded structured oligonucleotides (DNA or RNA) that can bind to a wide range of targets ("apatopes") with high affinity and specificity. These nucleic acid ligands, generated from pools of random-sequence by an in vitro selection process referred to as systematic evolution of ligands by exponent...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Kanwar JR,Roy K,Kanwar RK

更新日期：2011-12-01 00:00:00

abstract：:Renin, the first enzyme in the renin-angiotensin system, is critically important for the maintenance of blood pressure, and, therefore, as a target for antihypertensive therapy. The three-dimensional structure of renin would be an invaluable aid in understanding the functional properties of renin as well as in the des...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Hutchins C,Greer J

更新日期：1991-01-01 00:00:00

abstract：:HEPN (Higher Eukaryotes and Prokaryotes Nucleotide-binding) RNases are an emerging class of functionally diverse RNA processing and degradation enzymes. Members are defined by a small α-helical bundle encompassing a short consensus RNase motif. HEPN dimerization is a universal requirement for RNase activation as the c...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Pillon MC,Gordon J,Frazier MN,Stanley RE

更新日期：2021-02-01 00:00:00

abstract：:Aldehydes are highly reactive molecules that may have a variety of effects on biological systems. They can be generated from a virtually limitless number of endogenous and exogenous sources. Although some aldehyde-mediated effects such as vision are beneficial, many effects are deleterious, including cytotoxicity, mut...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Lindahl R

更新日期：1992-01-01 00:00:00

abstract：:Rab GTPases are becoming increasingly implicated in neurodegenerative disorders, although their role in amyotrophic lateral sclerosis (ALS) has been somewhat overlooked. However, dysfunction of intracellular transport is gaining increasing attention as a pathogenic mechanism in ALS. Many previous studies have focused ...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Parakh S,Perri ER,Jagaraj CJ,Ragagnin AMG,Atkin JD

更新日期：2018-12-01 00:00:00

abstract：:The lytic transglycosylases (LTs) are bacterial enzymes that catalyze the non-hydrolytic cleavage of the peptidoglycan structures of the bacterial cell wall. They are not catalysts of glycan synthesis as might be surmised from their name. Notwithstanding the seemingly mundane reaction catalyzed by the LTs, their lytic...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Dik DA,Marous DR,Fisher JF,Mobashery S

更新日期：2017-10-01 00:00:00

abstract：:DNA double-strand breaks are highly toxic DNA lesions that cause genomic instability, if not efficiently repaired. RecQ helicases are a family of highly conserved proteins that maintain genomic stability through their important roles in several DNA repair pathways, including DNA double-strand break repair. Double-stra...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Keijzers G,Maynard S,Shamanna RA,Rasmussen LJ,Croteau DL,Bohr VA

更新日期：2014-11-01 00:00:00

abstract：:The purpose of this review is to provide an analysis of the latest developments on the functions of the carbon catabolite-repression 4-Not (Ccr4-Not) complex in regulating eukaryotic gene expression. Ccr4-Not is a nine-subunit protein complex that is conserved in sequence and function throughout the eukaryotic kingdom...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Miller JE,Reese JC

更新日期：2012-07-01 00:00:00

abstract：:This article summarizes all experimental facts concerning the cold denaturation of single-domain, multi-domain, and multimeric globular proteins in aqueous solutions with and without urea and guanidine hydrochloride. The facts obtained by various experimental techniques are analyzed thermodynamically and it is shown t...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Privalov PL

更新日期：1990-01-01 00:00:00

abstract：:Torsin ATPases (Torsins) belong to the widespread AAA+ (ATPases associated with a variety of cellular activities) family of ATPases, which share structural similarity but have diverse cellular functions. Torsins are outliers in this family because they lack many characteristics of typical AAA+ proteins, and they are t...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Rose AE,Brown RS,Schlieker C

更新日期：2015-01-01 00:00:00

abstract：:Our understanding of the fundamental regulatory roles that tyrosine phosphatases play within cells has advanced significantly in the last two decades. Out-dated ideas that tyrosine phosphatases acts solely as the "off" switch counterbalancing the action of tyrosine kinases has proved to be flawed. PTP1B is the most ch...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Feldhammer M,Uetani N,Miranda-Saavedra D,Tremblay ML

更新日期：2013-09-01 00:00:00

abstract：:Transferrin is one of the sources of iron that is most readily available to colonizing and invading pathogens. In this review, we look at iron uptake by the bacterial transferrin receptor that is found in the families Neisseriaceae, Pasteurellaceae and Moraxellaceae. This bipartite receptor consists of the TonB-depend...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Pogoutse AK,Moraes TF

更新日期：2017-06-01 00:00:00

abstract：:Ribonucleotides are the most abundant non-canonical nucleotides in the genome. Their vast presence and influence over genome biology is becoming increasingly appreciated. Here we review the recent progress made in understanding their genomic presence, incorporation characteristics and usefulness as biomarkers for poly...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Zhou ZX,Williams JS,Lujan SA,Kunkel TA

更新日期：2021-02-01 00:00:00

abstract：:A protein is usually classified into one of the following five structural classes: alpha, beta, alpha + beta, alpha/beta, and zeta (irregular). The structural class of a protein is correlated with its amino acid composition. However, given the amino acid composition of a protein, how may one predict its structural cla...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Chou KC,Zhang CT

更新日期：1995-01-01 00:00:00

abstract：:Rapid advances in redox systems biology are creating new opportunities to understand complexities of human disease and contributions of environmental exposures. New understanding of thiol-disulfide systems have occurred during the past decade as a consequence of the discoveries that thiol and disulfide systems are mai...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Go YM,Jones DP

更新日期：2013-03-01 00:00:00

abstract：:Receptor for advanced glycation end products (RAGE) is an immunoglobulin-like receptor present on cell surface. RAGE binds to an array of structurally diverse ligands, acts as a pattern recognition receptor (PRR) and is expressed on cells of different origin performing different functions. RAGE ligation leads to the i...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Jangde N,Ray R,Rai V

更新日期：2020-12-01 00:00:00