Enzymatic oxidation of xenobiotic chemicals.

Abstract:

:Studies with biomimetic models can yield considerable insight into mechanisms of enzymatic catalysis. The discussion above indicates how such information has been important in the cases of flavoproteins, hemoproteins, and, to a lesser extent, the copper protein dopamine beta-hydroxylase. Some of the moieties that we generally accept as intermediates (i.e., high-valent iron oxygen complex in cytochrome P-450 reactions) would be extremely hard to characterize were it not for biomimetic models and more stable analogs such as peroxidase Compound I complexes. Although biomimetic models can be useful, we do need to keep them in perspective. It is possible to alter ligands and aspects of the environment in a way that may not reflect the active site of the protein. Eventually, the model work needs to be carried back to the proteins. We have seen that diagnostic substrates can be of considerable use in understanding enzymes and examples of elucidation of mechanisms through the use of rearrangements, mechanism-based inactivation, isotope labeling, kinetic isotope effects, and free energy relationships have been given. The point should be made that a myriad of approaches need to be applied to the study of each enzyme, for there is potential for misleading information if total reliance is placed on a single approach. The point also needs to be made that in the future we need information concerning the structures of the active sites of enzymes in order to fully understand them. Of the enzymes considered here, only a bacterial form of cytochrome P-450 (P-450cam) has been crystallized. The challenge to determine the three-dimensional structures of these enzymes, particularly the intrinsic membrane proteins, is formidable, yet our further understanding of the mechanisms of enzyme catalysis will remain elusive as long as we have to speak of putative specific residues, domains, and distances in anecdotal terms. The point should be made that there is actually some commonality among many of the catalytic mechanisms of oxidation, even among proteins with different structures and prosthetic groups. Thus, we see that cytochrome P-450 has some elements of a peroxidase and vice versa; indeed, the chemistry at the prosthetic group is probably very similar and the overall chemistry seems to be induced by the protein structure. The copper protein dopamine beta-hydroxylase appears to proceed with chemistry similar to that of the hemoprotein cytochrome P-450 and, although not so thoroughly studied, the non-heme iron protein P. oleovarans omega-hydroxylase.(ABSTRACT TRUNCATED AT 400 WORDS)

authors

Guengerich FP

doi

10.3109/10409239009090607

subject

Has Abstract

pub_date

1990-01-01 00:00:00

pages

97-153

issue

2

eissn

1040-9238

issn

1549-7798

journal_volume

25

pub_type

杂志文章,评审
  • Metabolic regulation via enzyme filamentation.

    abstract::Determining the mechanisms of enzymatic regulation is central to the study of cellular metabolism. Regulation of enzyme activity via polymerization-mediated strategies has been shown to be widespread, and plays a vital role in mediating cellular homeostasis. In this review, we begin with an overview of the filamentati...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.3109/10409238.2016.1172555

    authors: Aughey GN,Liu JL

    更新日期:2015-07-01 00:00:00

  • RAGE and its ligands: from pathogenesis to therapeutics.

    abstract::Receptor for advanced glycation end products (RAGE) is an immunoglobulin-like receptor present on cell surface. RAGE binds to an array of structurally diverse ligands, acts as a pattern recognition receptor (PRR) and is expressed on cells of different origin performing different functions. RAGE ligation leads to the i...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章

    doi:10.1080/10409238.2020.1819194

    authors: Jangde N,Ray R,Rai V

    更新日期:2020-12-01 00:00:00

  • S6 phosphorylation and the p70s6k/p85s6k.

    abstract::Activation of cell growth leads to the multiple phosphorylation of 40S ribosomal protein S6. The kinase responsible for controling this event is termed p70s6k/p85s6k. Both isoforms of the kinase are derived from a common gene activated by a complex set of phosphorylation events; each resides in a unique cellular compa...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.3109/10409239409083485

    authors: Ferrari S,Thomas G

    更新日期:1994-01-01 00:00:00

  • The structure, role, and regulation of type 1 protein phosphatases.

    abstract::Type 1 protein phosphatases (PP-1) comprise a group of widely distributed enzymes that specifically dephosphorylate serine and threonine residues of certain phosphoproteins. They all contain an isoform of the same catalytic subunit, which has an extremely conserved primary structure. One of the properties of PP-1 that...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.3109/10409239209082564

    authors: Bollen M,Stalmans W

    更新日期:1992-01-01 00:00:00

  • Functional O-GlcNAc modifications: implications in molecular regulation and pathophysiology.

    abstract::O-linked β-N-acetylglucosamine (O-GlcNAc) is a regulatory post-translational modification of intracellular proteins. The dynamic and inducible cycling of the modification is governed by O-GlcNAc transferase (OGT) and O-GlcNAcase (OGA) in response to UDP-GlcNAc levels in the hexosamine biosynthetic pathway (HBP). Due t...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.3109/10409238.2014.884535

    authors: Vaidyanathan K,Durning S,Wells L

    更新日期:2014-03-01 00:00:00

  • Chimeric aptamers in cancer cell-targeted drug delivery.

    abstract::Aptamers are single-stranded structured oligonucleotides (DNA or RNA) that can bind to a wide range of targets ("apatopes") with high affinity and specificity. These nucleic acid ligands, generated from pools of random-sequence by an in vitro selection process referred to as systematic evolution of ligands by exponent...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.3109/10409238.2011.614592

    authors: Kanwar JR,Roy K,Kanwar RK

    更新日期:2011-12-01 00:00:00

  • Cold denaturation of proteins.

    abstract::This article summarizes all experimental facts concerning the cold denaturation of single-domain, multi-domain, and multimeric globular proteins in aqueous solutions with and without urea and guanidine hydrochloride. The facts obtained by various experimental techniques are analyzed thermodynamically and it is shown t...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.3109/10409239009090612

    authors: Privalov PL

    更新日期:1990-01-01 00:00:00

  • Enzymatic degradation of glycosaminoglycans.

    abstract::Glycosaminoglycans (GAGs) play an intricate role in the extracellular matrix (ECM), not only as soluble components and polyelectrolytes, but also by specific interactions with growth factors and other transient components of the ECM. Modifications of GAG chains, such as isomerization, sulfation, and acetylation, gener...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.3109/10409239509083490

    authors: Ernst S,Langer R,Cooney CL,Sasisekharan R

    更新日期:1995-01-01 00:00:00

  • The molecular era of protein S-acylation: spotlight on structure, mechanisms, and dynamics.

    abstract::S-Acylation (commonly referred to as S-palmitoylation) is a post-translational modification consisting in the covalent attachment of an acyl chain to a cysteine residue of the target protein. The lability of the resulting thioester bond gives S-acylation an essential characteristic: its reversibility. S-acylation dyna...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.1080/10409238.2018.1488804

    authors: Zaballa ME,van der Goot FG

    更新日期:2018-08-01 00:00:00

  • The biochemical, biological, and pathological kaleidoscope of cell surface substrates processed by matrix metalloproteinases.

    abstract::Matrix metalloproteinases (MMPs) constitute a family of more than 20 endopeptidases. Identification of specific matrix and non-matrix components as MMP substrates showed that, aside from their initial role as extracellular matrix modifiers, MMPs play significant roles in highly complex processes such as the regulation...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.1080/10409230701340019

    authors: Cauwe B,Van den Steen PE,Opdenakker G

    更新日期:2007-05-01 00:00:00

  • HEPN RNases - an emerging class of functionally distinct RNA processing and degradation enzymes.

    abstract::HEPN (Higher Eukaryotes and Prokaryotes Nucleotide-binding) RNases are an emerging class of functionally diverse RNA processing and degradation enzymes. Members are defined by a small α-helical bundle encompassing a short consensus RNase motif. HEPN dimerization is a universal requirement for RNase activation as the c...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章

    doi:10.1080/10409238.2020.1856769

    authors: Pillon MC,Gordon J,Frazier MN,Stanley RE

    更新日期:2021-02-01 00:00:00

  • Structural biology of MCM helicases.

    abstract::The eukaryotic MCM2-7 complex is recruited onto origins of replication during the G1 phase of the cell cycle and acts as the main helicase at the replication fork during the S phase. Over the last few years a number of structural reports on MCM proteins using both electron microscopy and protein crystallography have b...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.1080/10409230903186012

    authors: Costa A,Onesti S

    更新日期:2009-09-01 00:00:00

  • Utility of low-copy nuclear gene sequences in plant phylogenetics.

    abstract::Low-copy nuclear genes in plants are a rich source of phylogenetic information. They hold a great potential to improve the robustness of phylogenetic reconstruction at all taxonomic levels, especially where universal markers such as cpDNA and nrDNA are unable to generate strong phylogenetic hypotheses. Low-copy nuclea...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.1080/10409230290771474

    authors: Sang T

    更新日期:2002-01-01 00:00:00

  • Ribonucleotide incorporation into DNA during DNA replication and its consequences.

    abstract::Ribonucleotides are the most abundant non-canonical nucleotides in the genome. Their vast presence and influence over genome biology is becoming increasingly appreciated. Here we review the recent progress made in understanding their genomic presence, incorporation characteristics and usefulness as biomarkers for poly...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章

    doi:10.1080/10409238.2020.1869175

    authors: Zhou ZX,Williams JS,Lujan SA,Kunkel TA

    更新日期:2021-02-01 00:00:00

  • Ccr4-Not complex: the control freak of eukaryotic cells.

    abstract::The purpose of this review is to provide an analysis of the latest developments on the functions of the carbon catabolite-repression 4-Not (Ccr4-Not) complex in regulating eukaryotic gene expression. Ccr4-Not is a nine-subunit protein complex that is conserved in sequence and function throughout the eukaryotic kingdom...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.3109/10409238.2012.667214

    authors: Miller JE,Reese JC

    更新日期:2012-07-01 00:00:00

  • Specificity of reversible ADP-ribosylation and regulation of cellular processes.

    abstract::Proper and timely regulation of cellular processes is fundamental to the overall health and viability of organisms across all kingdoms of life. Thus, organisms have evolved multiple highly dynamic and complex biochemical signaling cascades in order to adapt and survive diverse challenges. One such method of conferring...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.1080/10409238.2017.1394265

    authors: Crawford K,Bonfiglio JJ,Mikoč A,Matic I,Ahel I

    更新日期:2018-02-01 00:00:00

  • SRA and its binding partners: an expanding role for RNA-binding coregulators in nuclear receptor-mediated gene regulation.

    abstract::The discovery that SRA RNA can function as a nuclear receptor (NR) coactivator resulted in a fundamental change in the perception of how NRs and their coregulators may regulate hormone signaling pathways. The subsequent identification of molecules capable of binding SRA, including SHARP, p68, and more recently SLIRP, ...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.1080/10409230802661719

    authors: Colley SM,Leedman PJ

    更新日期:2009-01-01 00:00:00

  • The MIP family of integral membrane channel proteins: sequence comparisons, evolutionary relationships, reconstructed pathway of evolution, and proposed functional differentiation of the two repeated halves of the proteins.

    abstract::The major intrinsic protein (MIP) of the bovine lens fiber cell membrane was the first member of the MIP family of proteins to be sequenced and characterized. It is probably a homotetramer with transmembrane channel activity that plays a role in lens biogenesis or maintenance. The polypeptide chain of each subunit may...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.3109/10409239309086796

    authors: Reizer J,Reizer A,Saier MH Jr

    更新日期:1993-01-01 00:00:00

  • Architecture of the IFT ciliary trafficking machinery and interplay between its components.

    abstract::Cilia and flagella serve as cellular antennae and propellers in various eukaryotic cells, and contain specific receptors and ion channels as well as components of axonemal microtubules and molecular motors to achieve their sensory and motile functions. Not only the bidirectional trafficking of specific proteins within...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.1080/10409238.2020.1768206

    authors: Nakayama K,Katoh Y

    更新日期:2020-04-01 00:00:00

  • Clathrin: its role in receptor-mediated vesicular transport and specialized functions in neurons.

    abstract::Clathrin constitutes the coat of vesicles involved in three receptor-mediated intracellular transport pathways; the export of aggregated material from the trans-Golgi network for regulated secretion, the transfer of lysosomal hydrolases from the trans-Golgi network to lysosomes and receptor-mediated endocytosis at the...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.3109/10409239309078441

    authors: Pley U,Parham P

    更新日期:1993-01-01 00:00:00

  • Dynamic structure of plasma fibronectin.

    abstract::Fibronectin is a large vertebrate glycoprotein that is found in soluble and insoluble forms and involved in diverse processes. Protomeric fibronectin is a dimer of subunits, each of which comprises 29-31 modules - 12 type I, two type II and 15-17 type III. Plasma fibronectin is secreted by hepatocytes and circulates i...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.1080/10409238.2016.1184224

    authors: Maurer LM,Ma W,Mosher DF

    更新日期:2015-07-01 00:00:00

  • Bacterial small RNA regulators.

    abstract::Small regulatory RNAs can modify the activity of proteins and the stability and translation of mRNAs. They have now been found in a wide range of organisms, and can play previously unsuspected critical regulatory roles. The bacterial small RNAs include two major classes. The largest family(with at least 20 members in ...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.1080/10409230590918702

    authors: Majdalani N,Vanderpool CK,Gottesman S

    更新日期:2005-03-01 00:00:00

  • Defining genome maintenance pathways using functional genomic approaches.

    abstract::Genome maintenance activities including DNA repair, cell division cycle control, and checkpoint signaling pathways preserve genome integrity and prevent disease. Defects in these pathways cause birth defects, neurodegeneration, premature aging, and cancer. Recent technical advances in functional genomic approaches suc...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.3109/10409238.2011.588938

    authors: Bansbach CE,Cortez D

    更新日期:2011-08-01 00:00:00

  • AMPK inhibition in health and disease.

    abstract::All living organisms depend on dynamic mechanisms that repeatedly reassess the status of amassed energy, in order to adapt energy supply to demand. The AMP-activated protein kinase (AMPK) alphabetagamma heterotrimer has emerged as an important integrator of signals managing energy balance. Control of AMPK activity inv...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.3109/10409238.2010.488215

    authors: Viollet B,Horman S,Leclerc J,Lantier L,Foretz M,Billaud M,Giri S,Andreelli F

    更新日期:2010-08-01 00:00:00

  • Enzymology of the acetyl-CoA pathway of CO2 fixation.

    abstract::We know of three routes that organisms have evolved to synthesize complex organic molecules from CO2: the Calvin cycle, the reverse tricarboxylic acid cycle, and the reductive acetyl-CoA pathway. This review describes the enzymatic steps involved in the acetyl-CoA pathway, also called the Wood pathway, which is the ma...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.3109/10409239109114070

    authors: Ragsdale SW

    更新日期:1991-01-01 00:00:00

  • Prediction of protein structural classes.

    abstract::A protein is usually classified into one of the following five structural classes: alpha, beta, alpha + beta, alpha/beta, and zeta (irregular). The structural class of a protein is correlated with its amino acid composition. However, given the amino acid composition of a protein, how may one predict its structural cla...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.3109/10409239509083488

    authors: Chou KC,Zhang CT

    更新日期:1995-01-01 00:00:00

  • Translational control of eukaryotic gene expression.

    abstract::Translational control mechanisms are, besides transcriptional control and mRNA stability, the most determining for final protein levels. A large number of accessory factors that assist the ribosome during initiation, elongation, and termination of translation are required for protein synthesis. Cap-dependent translati...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.1080/10409230902882090

    authors: Van Der Kelen K,Beyaert R,Inzé D,De Veylder L

    更新日期:2009-07-01 00:00:00

  • Isoprenoids and protein prenylation: implications in the pathogenesis and therapeutic intervention of Alzheimer's disease.

    abstract::The mevalonate-isoprenoid-cholesterol biosynthesis pathway plays a key role in human health and disease. The importance of this pathway is underscored by the discovery that two major isoprenoids, farnesyl and geranylgeranyl pyrophosphate, are required to modify an array of proteins through a process known as protein p...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.1080/10409238.2018.1458070

    authors: Jeong A,Suazo KF,Wood WG,Distefano MD,Li L

    更新日期:2018-06-01 00:00:00

  • From canonical to modified nucleotides: balancing translation and metabolism.

    abstract::Every type of nucleic acid in cells may undergo some kind of post-replicative or post-transcriptional chemical modification. Recent evidence has highlighted their importance in biology and their chemical complexity. In the following pages, we will describe new discoveries of modifications, with a focus on tRNA and mRN...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章

    doi:10.1080/10409238.2020.1818685

    authors: Accornero F,Ross RL,Alfonzo JD

    更新日期:2020-12-01 00:00:00

  • Multiple functions of insulin-degrading enzyme: a metabolic crosslight?

    abstract::Insulin-degrading enzyme (IDE) is a ubiquitous zinc peptidase of the inverzincin family, which has been initially discovered as the enzyme responsible for insulin catabolism; therefore, its involvement in the onset of diabetes has been largely investigated. However, further studies on IDE unraveled its ability to degr...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.1080/10409238.2017.1337707

    authors: Tundo GR,Sbardella D,Ciaccio C,Grasso G,Gioia M,Coletta A,Polticelli F,Di Pierro D,Milardi D,Van Endert P,Marini S,Coletta M

    更新日期:2017-10-01 00:00:00