The biochemical, biological, and pathological kaleidoscope of cell surface substrates processed by matrix metalloproteinases.

abstract：:Ribonucleotides are the most abundant non-canonical nucleotides in the genome. Their vast presence and influence over genome biology is becoming increasingly appreciated. Here we review the recent progress made in understanding their genomic presence, incorporation characteristics and usefulness as biomarkers for poly...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Zhou ZX,Williams JS,Lujan SA,Kunkel TA

更新日期：2021-02-01 00:00:00

abstract：:Small regulatory RNAs can modify the activity of proteins and the stability and translation of mRNAs. They have now been found in a wide range of organisms, and can play previously unsuspected critical regulatory roles. The bacterial small RNAs include two major classes. The largest family(with at least 20 members in ...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Majdalani N,Vanderpool CK,Gottesman S

更新日期：2005-03-01 00:00:00

abstract：:A protein is usually classified into one of the following five structural classes: alpha, beta, alpha + beta, alpha/beta, and zeta (irregular). The structural class of a protein is correlated with its amino acid composition. However, given the amino acid composition of a protein, how may one predict its structural cla...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Chou KC,Zhang CT

更新日期：1995-01-01 00:00:00

abstract：:The mevalonate-isoprenoid-cholesterol biosynthesis pathway plays a key role in human health and disease. The importance of this pathway is underscored by the discovery that two major isoprenoids, farnesyl and geranylgeranyl pyrophosphate, are required to modify an array of proteins through a process known as protein p...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Jeong A,Suazo KF,Wood WG,Distefano MD,Li L

更新日期：2018-06-01 00:00:00

abstract：:Eukaryogenesis, the origin of the eukaryotic cell, represents one of the fundamental evolutionary transitions in the history of life on earth. This event, which is estimated to have occurred over one billion years ago, remains rather poorly understood. While some well-validated examples of fossil microbial eukaryotes ...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Koumandou VL,Wickstead B,Ginger ML,van der Giezen M,Dacks JB,Field MC

更新日期：2013-07-01 00:00:00

abstract：:Translational control mechanisms are, besides transcriptional control and mRNA stability, the most determining for final protein levels. A large number of accessory factors that assist the ribosome during initiation, elongation, and termination of translation are required for protein synthesis. Cap-dependent translati...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Van Der Kelen K,Beyaert R,Inzé D,De Veylder L

更新日期：2009-07-01 00:00:00

abstract：:Aptamers are single-stranded structured oligonucleotides (DNA or RNA) that can bind to a wide range of targets ("apatopes") with high affinity and specificity. These nucleic acid ligands, generated from pools of random-sequence by an in vitro selection process referred to as systematic evolution of ligands by exponent...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Kanwar JR,Roy K,Kanwar RK

更新日期：2011-12-01 00:00:00

abstract：:One of the experimental platforms to study programs increasing genetic diversity in cells under stressful or nondividing conditions is adaptive mutagenesis, also called stationary phase mutagenesis or stress-induced mutagenesis. In some model systems, there is evidence that mutagenesis occurs in genes that are activel...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Robleto EA,Yasbin R,Ross C,Pedraza-Reyes M

更新日期：2007-09-01 00:00:00

abstract：:Every type of nucleic acid in cells may undergo some kind of post-replicative or post-transcriptional chemical modification. Recent evidence has highlighted their importance in biology and their chemical complexity. In the following pages, we will describe new discoveries of modifications, with a focus on tRNA and mRN...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Accornero F,Ross RL,Alfonzo JD

更新日期：2020-12-01 00:00:00

abstract：:Activation of cell growth leads to the multiple phosphorylation of 40S ribosomal protein S6. The kinase responsible for controling this event is termed p70s6k/p85s6k. Both isoforms of the kinase are derived from a common gene activated by a complex set of phosphorylation events; each resides in a unique cellular compa...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Ferrari S,Thomas G

更新日期：1994-01-01 00:00:00

abstract：:Proper and timely regulation of cellular processes is fundamental to the overall health and viability of organisms across all kingdoms of life. Thus, organisms have evolved multiple highly dynamic and complex biochemical signaling cascades in order to adapt and survive diverse challenges. One such method of conferring...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Crawford K,Bonfiglio JJ,Mikoč A,Matic I,Ahel I

更新日期：2018-02-01 00:00:00

abstract：:The eukaryotic MCM2-7 complex is recruited onto origins of replication during the G1 phase of the cell cycle and acts as the main helicase at the replication fork during the S phase. Over the last few years a number of structural reports on MCM proteins using both electron microscopy and protein crystallography have b...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Costa A,Onesti S

更新日期：2009-09-01 00:00:00

abstract：:HEPN (Higher Eukaryotes and Prokaryotes Nucleotide-binding) RNases are an emerging class of functionally diverse RNA processing and degradation enzymes. Members are defined by a small α-helical bundle encompassing a short consensus RNase motif. HEPN dimerization is a universal requirement for RNase activation as the c...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Pillon MC,Gordon J,Frazier MN,Stanley RE

更新日期：2021-02-01 00:00:00

abstract：:The maintenance of genomic stability relies on the coordinated action of a number of cellular processes, including activation of the DNA-damage checkpoint, DNA replication, DNA repair, and telomere homeostasis. Many proteins involved in these cellular processes use different types of functional modules to regulate and...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Flynn RL,Zou L

更新日期：2010-08-01 00:00:00

abstract：:Rab GTPases are becoming increasingly implicated in neurodegenerative disorders, although their role in amyotrophic lateral sclerosis (ALS) has been somewhat overlooked. However, dysfunction of intracellular transport is gaining increasing attention as a pathogenic mechanism in ALS. Many previous studies have focused ...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Parakh S,Perri ER,Jagaraj CJ,Ragagnin AMG,Atkin JD

更新日期：2018-12-01 00:00:00

abstract：:Transferrin is one of the sources of iron that is most readily available to colonizing and invading pathogens. In this review, we look at iron uptake by the bacterial transferrin receptor that is found in the families Neisseriaceae, Pasteurellaceae and Moraxellaceae. This bipartite receptor consists of the TonB-depend...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Pogoutse AK,Moraes TF

更新日期：2017-06-01 00:00:00

abstract：:Renin, the first enzyme in the renin-angiotensin system, is critically important for the maintenance of blood pressure, and, therefore, as a target for antihypertensive therapy. The three-dimensional structure of renin would be an invaluable aid in understanding the functional properties of renin as well as in the des...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Hutchins C,Greer J

更新日期：1991-01-01 00:00:00

abstract：:Ribonucleases (RNases) are mediators in most reactions of RNA metabolism. In recent years, there has been a surge of new information about RNases and the roles they play in cell physiology. In this review, a detailed description of bacterial RNases is presented, focusing primarily on those from Escherichia coli and Ba...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Bechhofer DH,Deutscher MP

更新日期：2019-06-01 00:00:00

abstract：:Torsin ATPases (Torsins) belong to the widespread AAA+ (ATPases associated with a variety of cellular activities) family of ATPases, which share structural similarity but have diverse cellular functions. Torsins are outliers in this family because they lack many characteristics of typical AAA+ proteins, and they are t...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Rose AE,Brown RS,Schlieker C

更新日期：2015-01-01 00:00:00

abstract：:DNA double-strand breaks are highly toxic DNA lesions that cause genomic instability, if not efficiently repaired. RecQ helicases are a family of highly conserved proteins that maintain genomic stability through their important roles in several DNA repair pathways, including DNA double-strand break repair. Double-stra...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Keijzers G,Maynard S,Shamanna RA,Rasmussen LJ,Croteau DL,Bohr VA

更新日期：2014-11-01 00:00:00

abstract：:DNA damaging agents have been a cornerstone of cancer therapy for nearly a century. The discovery of many of these chemicals, particularly the alkylating agents, are deeply entwined with the development of poisonous materials originally intended for use in warfare. Over the last decades, their anti-proliferative effec...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Tsao N,Schärer OD,Mosammaparast N

更新日期：2021-01-12 00:00:00

abstract：:The reorganization of metabolic pathways in cancer facilitates the flux of carbon and reducing equivalents into anabolic pathways at the expense of oxidative phosphorylation. This provides rapidly dividing cells with the necessary precursors for membrane, protein and nucleic acid synthesis. A fundamental metabolic per...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Ridgway ND

更新日期：2013-01-01 00:00:00

abstract：:This review focuses on how microbes live on CO as a sole source of carbon and energy and with CO by generating carbon monoxide as a metabolic intermediate. The use of CO is a property of organisms that use the Wood-L jungdahl pathway of autotrophic growth. The review discusses when CO metabolism originated, when and h...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Ragsdale SW

更新日期：2004-05-01 00:00:00

abstract：:For more than a century amyloid was considered to be an interesting, unique, but inconsequential pathologic entity that rarely caused significant clinical problems. We now recognize that amyloid is not one entity. In vivo it is a uniform organization of a disease, or process, specific protein co-deposited with a set o...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Kisilevsky R,Fraser PE

更新日期：1997-01-01 00:00:00

abstract：:Rapid advances in redox systems biology are creating new opportunities to understand complexities of human disease and contributions of environmental exposures. New understanding of thiol-disulfide systems have occurred during the past decade as a consequence of the discoveries that thiol and disulfide systems are mai...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Go YM,Jones DP

更新日期：2013-03-01 00:00:00

abstract：:The purpose of this review is to provide an analysis of the latest developments on the functions of the carbon catabolite-repression 4-Not (Ccr4-Not) complex in regulating eukaryotic gene expression. Ccr4-Not is a nine-subunit protein complex that is conserved in sequence and function throughout the eukaryotic kingdom...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Miller JE,Reese JC

更新日期：2012-07-01 00:00:00

abstract：:This article is an overview of current research in the area of sulfate activation. Emphasis is placed on presenting unresolved issues in an appropriate context for critical evaluation by the reader. The energetics of sulfate activation is reevaluated in light of recent findings that demonstrate that the synthesis of a...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Leyh TS

更新日期：1993-01-01 00:00:00

abstract：:Following a brief introduction of cellular response to stimulation comprising leukocyte activation, three major areas are discussed: (1) the neutrophil oxidase; (2) myeloperoxidase (MPO)-dependent oxidative microbicidal reactions; and (3) MPO-independent oxidative reactions. Topics included in section (A) are current ...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Hurst JK,Barrette WC Jr

更新日期：1989-01-01 00:00:00

abstract：:Insulin-degrading enzyme (IDE) is a ubiquitous zinc peptidase of the inverzincin family, which has been initially discovered as the enzyme responsible for insulin catabolism; therefore, its involvement in the onset of diabetes has been largely investigated. However, further studies on IDE unraveled its ability to degr...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Tundo GR,Sbardella D,Ciaccio C,Grasso G,Gioia M,Coletta A,Polticelli F,Di Pierro D,Milardi D,Van Endert P,Marini S,Coletta M

更新日期：2017-10-01 00:00:00

abstract：:The plasma coagulation system in mammalian blood consists of a cascade of enzyme activation events in which serine proteases activate the proteins (proenzymes and procofactors) in the next step of the cascade via limited proteolysis. The ultimate outcome is the polymerization of fibrin and the activation of platelets,...

journal_title：Critical reviews in biochemistry and molecular biology

authors： Smith SA,Travers RJ,Morrissey JH

更新日期：2015-01-01 00:00:00