Comparative modeling of proteins in the design of novel renin inhibitors.

Abstract:

:Renin, the first enzyme in the renin-angiotensin system, is critically important for the maintenance of blood pressure, and, therefore, as a target for antihypertensive therapy. The three-dimensional structure of renin would be an invaluable aid in understanding the functional properties of renin as well as in the design of novel, potent inhibitors. Three-dimensional models of renin have been developed by a number of different groups based on comparative homology modeling from the other known aspartic proteinase structures. These models have been used widely in the drug design process to suggest targets for synthesis and to rationalize the structure-activity relationships of compounds. This review describes the different published renin models and compares them to the extent possible. Applications of these model renin and renin-inhibitor complex structures to biological function and inhibitor design are summarized.

authors

Hutchins C,Greer J

doi

10.3109/10409239109081721

subject

Has Abstract

pub_date

1991-01-01 00:00:00

pages

77-127

issue

1

eissn

1040-9238

issn

1549-7798

journal_volume

26

pub_type

杂志文章,评审
  • The MIP family of integral membrane channel proteins: sequence comparisons, evolutionary relationships, reconstructed pathway of evolution, and proposed functional differentiation of the two repeated halves of the proteins.

    abstract::The major intrinsic protein (MIP) of the bovine lens fiber cell membrane was the first member of the MIP family of proteins to be sequenced and characterized. It is probably a homotetramer with transmembrane channel activity that plays a role in lens biogenesis or maintenance. The polypeptide chain of each subunit may...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.3109/10409239309086796

    authors: Reizer J,Reizer A,Saier MH Jr

    更新日期:1993-01-01 00:00:00

  • Structural biology of MCM helicases.

    abstract::The eukaryotic MCM2-7 complex is recruited onto origins of replication during the G1 phase of the cell cycle and acts as the main helicase at the replication fork during the S phase. Over the last few years a number of structural reports on MCM proteins using both electron microscopy and protein crystallography have b...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.1080/10409230903186012

    authors: Costa A,Onesti S

    更新日期:2009-09-01 00:00:00

  • RAGE and its ligands: from pathogenesis to therapeutics.

    abstract::Receptor for advanced glycation end products (RAGE) is an immunoglobulin-like receptor present on cell surface. RAGE binds to an array of structurally diverse ligands, acts as a pattern recognition receptor (PRR) and is expressed on cells of different origin performing different functions. RAGE ligation leads to the i...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章

    doi:10.1080/10409238.2020.1819194

    authors: Jangde N,Ray R,Rai V

    更新日期:2020-12-01 00:00:00

  • Enzymatic degradation of glycosaminoglycans.

    abstract::Glycosaminoglycans (GAGs) play an intricate role in the extracellular matrix (ECM), not only as soluble components and polyelectrolytes, but also by specific interactions with growth factors and other transient components of the ECM. Modifications of GAG chains, such as isomerization, sulfation, and acetylation, gener...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.3109/10409239509083490

    authors: Ernst S,Langer R,Cooney CL,Sasisekharan R

    更新日期:1995-01-01 00:00:00

  • The molecular era of protein S-acylation: spotlight on structure, mechanisms, and dynamics.

    abstract::S-Acylation (commonly referred to as S-palmitoylation) is a post-translational modification consisting in the covalent attachment of an acyl chain to a cysteine residue of the target protein. The lability of the resulting thioester bond gives S-acylation an essential characteristic: its reversibility. S-acylation dyna...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.1080/10409238.2018.1488804

    authors: Zaballa ME,van der Goot FG

    更新日期:2018-08-01 00:00:00

  • HEPN RNases - an emerging class of functionally distinct RNA processing and degradation enzymes.

    abstract::HEPN (Higher Eukaryotes and Prokaryotes Nucleotide-binding) RNases are an emerging class of functionally diverse RNA processing and degradation enzymes. Members are defined by a small α-helical bundle encompassing a short consensus RNase motif. HEPN dimerization is a universal requirement for RNase activation as the c...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章

    doi:10.1080/10409238.2020.1856769

    authors: Pillon MC,Gordon J,Frazier MN,Stanley RE

    更新日期:2021-02-01 00:00:00

  • Translational control of eukaryotic gene expression.

    abstract::Translational control mechanisms are, besides transcriptional control and mRNA stability, the most determining for final protein levels. A large number of accessory factors that assist the ribosome during initiation, elongation, and termination of translation are required for protein synthesis. Cap-dependent translati...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.1080/10409230902882090

    authors: Van Der Kelen K,Beyaert R,Inzé D,De Veylder L

    更新日期:2009-07-01 00:00:00

  • Advances in Toll-like receptor biology: Modes of activation by diverse stimuli.

    abstract::As we learn more about the biology of the Toll-like receptors (TLRs), a wide range of molecules that can activate this fascinating family of pattern recognition receptors emerges. In addition to conserved pathogenic components, endogenous danger signals created upon tissue damage are also sensed by TLRs. Detection of ...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.3109/10409238.2015.1033511

    authors: Bryant CE,Gay NJ,Heymans S,Sacre S,Schaefer L,Midwood KS

    更新日期:2015-01-01 00:00:00

  • Utility of low-copy nuclear gene sequences in plant phylogenetics.

    abstract::Low-copy nuclear genes in plants are a rich source of phylogenetic information. They hold a great potential to improve the robustness of phylogenetic reconstruction at all taxonomic levels, especially where universal markers such as cpDNA and nrDNA are unable to generate strong phylogenetic hypotheses. Low-copy nuclea...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.1080/10409230290771474

    authors: Sang T

    更新日期:2002-01-01 00:00:00

  • Specificity of reversible ADP-ribosylation and regulation of cellular processes.

    abstract::Proper and timely regulation of cellular processes is fundamental to the overall health and viability of organisms across all kingdoms of life. Thus, organisms have evolved multiple highly dynamic and complex biochemical signaling cascades in order to adapt and survive diverse challenges. One such method of conferring...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.1080/10409238.2017.1394265

    authors: Crawford K,Bonfiglio JJ,Mikoč A,Matic I,Ahel I

    更新日期:2018-02-01 00:00:00

  • How eukaryotic genes are transcribed.

    abstract::Regulation of eukaryotic gene expression is far more complex than one might have imagined 30 years ago. However, progress towards understanding gene regulatory mechanisms has been rapid and comprehensive, which has made the integration of detailed observations into broadly connected concepts a challenge. This review a...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.1080/10409230902858785

    authors: Venters BJ,Pugh BF

    更新日期:2009-06-01 00:00:00

  • SRA and its binding partners: an expanding role for RNA-binding coregulators in nuclear receptor-mediated gene regulation.

    abstract::The discovery that SRA RNA can function as a nuclear receptor (NR) coactivator resulted in a fundamental change in the perception of how NRs and their coregulators may regulate hormone signaling pathways. The subsequent identification of molecules capable of binding SRA, including SHARP, p68, and more recently SLIRP, ...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.1080/10409230802661719

    authors: Colley SM,Leedman PJ

    更新日期:2009-01-01 00:00:00

  • The role of RecQ helicases in non-homologous end-joining.

    abstract::DNA double-strand breaks are highly toxic DNA lesions that cause genomic instability, if not efficiently repaired. RecQ helicases are a family of highly conserved proteins that maintain genomic stability through their important roles in several DNA repair pathways, including DNA double-strand break repair. Double-stra...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.3109/10409238.2014.942450

    authors: Keijzers G,Maynard S,Shamanna RA,Rasmussen LJ,Croteau DL,Bohr VA

    更新日期:2014-11-01 00:00:00

  • Prebiotic chemistry and the origin of the RNA world.

    abstract::The demonstration that ribosomal peptide synthesis is a ribozyme-catalyzed reaction makes it almost certain that there was once an RNA World. The central problem for origin-of-life studies, therefore, is to understand how a protein-free RNA World became established on the primitive Earth. We first review the literatur...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.1080/10409230490460765

    authors: Orgel LE

    更新日期:2004-03-01 00:00:00

  • The response of trypanosomes and other eukaryotes to ER stress and the spliced leader RNA silencing (SLS) pathway in Trypanosoma brucei.

    abstract::The unfolded protein response (UPR) is induced when the quality control machinery of the cell is overloaded with unfolded proteins or when one of the functions of the endoplasmic reticulum (ER) is perturbed. Here, I describe UPR in yeast and mammals, and compare it to what we know about pathogenic fungi and the parasi...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.3109/10409238.2015.1042541

    authors: Michaeli S

    更新日期:2015-01-01 00:00:00

  • The role of phosphatidylcholine and choline metabolites to cell proliferation and survival.

    abstract::The reorganization of metabolic pathways in cancer facilitates the flux of carbon and reducing equivalents into anabolic pathways at the expense of oxidative phosphorylation. This provides rapidly dividing cells with the necessary precursors for membrane, protein and nucleic acid synthesis. A fundamental metabolic per...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.3109/10409238.2012.735643

    authors: Ridgway ND

    更新日期:2013-01-01 00:00:00

  • Aldehyde dehydrogenases and their role in carcinogenesis.

    abstract::Aldehydes are highly reactive molecules that may have a variety of effects on biological systems. They can be generated from a virtually limitless number of endogenous and exogenous sources. Although some aldehyde-mediated effects such as vision are beneficial, many effects are deleterious, including cytotoxicity, mut...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.3109/10409239209082565

    authors: Lindahl R

    更新日期:1992-01-01 00:00:00

  • The protein family of RNA helicases.

    abstract::RNA helicases represent a large family of proteins that have been detected in almost all biological systems where RNA plays a central role. They are ubiquitously distributed over a wide range of organisms and are involved in nuclear and mitochondrial splicing processes, RNA editing, rRNA processing, translation initia...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.1080/10409239891204233

    authors: Lüking A,Stahl U,Schmidt U

    更新日期:1998-01-01 00:00:00

  • A beta amyloidogenesis: unique, or variation on a systemic theme?

    abstract::For more than a century amyloid was considered to be an interesting, unique, but inconsequential pathologic entity that rarely caused significant clinical problems. We now recognize that amyloid is not one entity. In vivo it is a uniform organization of a disease, or process, specific protein co-deposited with a set o...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.3109/10409239709082674

    authors: Kisilevsky R,Fraser PE

    更新日期:1997-01-01 00:00:00

  • Prediction of protein structural classes.

    abstract::A protein is usually classified into one of the following five structural classes: alpha, beta, alpha + beta, alpha/beta, and zeta (irregular). The structural class of a protein is correlated with its amino acid composition. However, given the amino acid composition of a protein, how may one predict its structural cla...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.3109/10409239509083488

    authors: Chou KC,Zhang CT

    更新日期:1995-01-01 00:00:00

  • Life with carbon monoxide.

    abstract::This review focuses on how microbes live on CO as a sole source of carbon and energy and with CO by generating carbon monoxide as a metabolic intermediate. The use of CO is a property of organisms that use the Wood-L jungdahl pathway of autotrophic growth. The review discusses when CO metabolism originated, when and h...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.1080/10409230490496577

    authors: Ragsdale SW

    更新日期:2004-05-01 00:00:00

  • Isoprenoids and protein prenylation: implications in the pathogenesis and therapeutic intervention of Alzheimer's disease.

    abstract::The mevalonate-isoprenoid-cholesterol biosynthesis pathway plays a key role in human health and disease. The importance of this pathway is underscored by the discovery that two major isoprenoids, farnesyl and geranylgeranyl pyrophosphate, are required to modify an array of proteins through a process known as protein p...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.1080/10409238.2018.1458070

    authors: Jeong A,Suazo KF,Wood WG,Distefano MD,Li L

    更新日期:2018-06-01 00:00:00

  • The biochemical, biological, and pathological kaleidoscope of cell surface substrates processed by matrix metalloproteinases.

    abstract::Matrix metalloproteinases (MMPs) constitute a family of more than 20 endopeptidases. Identification of specific matrix and non-matrix components as MMP substrates showed that, aside from their initial role as extracellular matrix modifiers, MMPs play significant roles in highly complex processes such as the regulation...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.1080/10409230701340019

    authors: Cauwe B,Van den Steen PE,Opdenakker G

    更新日期:2007-05-01 00:00:00

  • Nonenzymatic deamidation of asparaginyl and glutaminyl residues in proteins.

    abstract::Some asparagine and glutamine residues in proteins undergo deamidation to aspartate and glutamate with rates that depend upon the sequence and higher-order structure of the protein. Functional groups within the protein can catalyze this reaction, acting as general acids, bases, or stabilizers of the transition state. ...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.3109/10409239109081719

    authors: Wright HT

    更新日期:1991-01-01 00:00:00

  • Rab-dependent cellular trafficking and amyotrophic lateral sclerosis.

    abstract::Rab GTPases are becoming increasingly implicated in neurodegenerative disorders, although their role in amyotrophic lateral sclerosis (ALS) has been somewhat overlooked. However, dysfunction of intracellular transport is gaining increasing attention as a pathogenic mechanism in ALS. Many previous studies have focused ...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.1080/10409238.2018.1553926

    authors: Parakh S,Perri ER,Jagaraj CJ,Ragagnin AMG,Atkin JD

    更新日期:2018-12-01 00:00:00

  • FeII/alpha-ketoglutarate-dependent hydroxylases and related enzymes.

    abstract::FeII/alpha-ketoglutarate (alphaKG)-dependent hydroxylases catalyze an amazing diversity of reactions that result in protein side-chain modifications, repair of alkylated DNA/RNA, biosynthesis of antibiotics and plant products, metabolism related to lipids, and biodegradation of a variety of compounds. These enzymes po...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.1080/10409230490440541

    authors: Hausinger RP

    更新日期:2004-01-01 00:00:00

  • The complexity and regulation of repair of alkylation damage to nucleic acids.

    abstract::DNA damaging agents have been a cornerstone of cancer therapy for nearly a century. The discovery of many of these chemicals, particularly the alkylating agents, are deeply entwined with the development of poisonous materials originally intended for use in warfare. Over the last decades, their anti-proliferative effec...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章

    doi:10.1080/10409238.2020.1869173

    authors: Tsao N,Schärer OD,Mosammaparast N

    更新日期:2021-01-12 00:00:00

  • Enzymatic oxidation of xenobiotic chemicals.

    abstract::Studies with biomimetic models can yield considerable insight into mechanisms of enzymatic catalysis. The discussion above indicates how such information has been important in the cases of flavoproteins, hemoproteins, and, to a lesser extent, the copper protein dopamine beta-hydroxylase. Some of the moieties that we g...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.3109/10409239009090607

    authors: Guengerich FP

    更新日期:1990-01-01 00:00:00

  • Ccr4-Not complex: the control freak of eukaryotic cells.

    abstract::The purpose of this review is to provide an analysis of the latest developments on the functions of the carbon catabolite-repression 4-Not (Ccr4-Not) complex in regulating eukaryotic gene expression. Ccr4-Not is a nine-subunit protein complex that is conserved in sequence and function throughout the eukaryotic kingdom...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.3109/10409238.2012.667214

    authors: Miller JE,Reese JC

    更新日期:2012-07-01 00:00:00

  • The structure, role, and regulation of type 1 protein phosphatases.

    abstract::Type 1 protein phosphatases (PP-1) comprise a group of widely distributed enzymes that specifically dephosphorylate serine and threonine residues of certain phosphoproteins. They all contain an isoform of the same catalytic subunit, which has an extremely conserved primary structure. One of the properties of PP-1 that...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.3109/10409239209082564

    authors: Bollen M,Stalmans W

    更新日期:1992-01-01 00:00:00