Abstract:
:The unfolded protein response (UPR) is induced when the quality control machinery of the cell is overloaded with unfolded proteins or when one of the functions of the endoplasmic reticulum (ER) is perturbed. Here, I describe UPR in yeast and mammals, and compare it to what we know about pathogenic fungi and the parasitic protozoans from the order kinetoplastida, focusing on the novel pathway the spliced leader silencing (SLS) in Trypanosoma brucei. Trypanosomes lack conventional transcription regulation, and thus, lack most of the UPR machinery present in other eukaryotes. Trypanosome genes are transcribed in polycistronic units that are processed by trans-splicing and polyadenylation. In trans-splicing, which is essential for processing of each mRNA, an exon known as the spliced leader (SL) is added to all mRNAs from a small RNA, the SL RNA. Under severe ER stress, T. brucei elicits the SLS pathway. In SLS, the transcription of the SL RNA gene is extinguished, and the entire transcription complex dissociates from the SL RNA promoter. Induction of SLS is mediated by an ER-associated kinase (PK3) that migrates to the nucleus, where it phosphorylates the TATA-binding protein (TRF4), leading shut-off of SL RNA transcription. As a result, trans-splicing is inhibited and the parasites activate a programmed cell death (PCD) pathway. Despite the ability to sense the ER stress, the different eukaryotes, especially unicellular parasites and pathogenic fungi, developed a variety of unique and different ways to sense and adjust to this stress in a manner different from their host.
journal_name
Crit Rev Biochem Mol Bioljournal_title
Critical reviews in biochemistry and molecular biologyauthors
Michaeli Sdoi
10.3109/10409238.2015.1042541subject
Has Abstractpub_date
2015-01-01 00:00:00pages
256-67issue
3eissn
1040-9238issn
1549-7798journal_volume
50pub_type
杂志文章,评审abstract::Type 1 protein phosphatases (PP-1) comprise a group of widely distributed enzymes that specifically dephosphorylate serine and threonine residues of certain phosphoproteins. They all contain an isoform of the same catalytic subunit, which has an extremely conserved primary structure. One of the properties of PP-1 that...
journal_title:Critical reviews in biochemistry and molecular biology
pub_type: 杂志文章,评审
doi:10.3109/10409239209082564
更新日期:1992-01-01 00:00:00
abstract::Torsin ATPases (Torsins) belong to the widespread AAA+ (ATPases associated with a variety of cellular activities) family of ATPases, which share structural similarity but have diverse cellular functions. Torsins are outliers in this family because they lack many characteristics of typical AAA+ proteins, and they are t...
journal_title:Critical reviews in biochemistry and molecular biology
pub_type: 杂志文章,评审
doi:10.3109/10409238.2015.1091804
更新日期:2015-01-01 00:00:00
abstract::Transferrin is one of the sources of iron that is most readily available to colonizing and invading pathogens. In this review, we look at iron uptake by the bacterial transferrin receptor that is found in the families Neisseriaceae, Pasteurellaceae and Moraxellaceae. This bipartite receptor consists of the TonB-depend...
journal_title:Critical reviews in biochemistry and molecular biology
pub_type: 杂志文章,评审
doi:10.1080/10409238.2017.1293606
更新日期:2017-06-01 00:00:00
abstract::DNA double-strand breaks are highly toxic DNA lesions that cause genomic instability, if not efficiently repaired. RecQ helicases are a family of highly conserved proteins that maintain genomic stability through their important roles in several DNA repair pathways, including DNA double-strand break repair. Double-stra...
journal_title:Critical reviews in biochemistry and molecular biology
pub_type: 杂志文章,评审
doi:10.3109/10409238.2014.942450
更新日期:2014-11-01 00:00:00
abstract::The plasma coagulation system in mammalian blood consists of a cascade of enzyme activation events in which serine proteases activate the proteins (proenzymes and procofactors) in the next step of the cascade via limited proteolysis. The ultimate outcome is the polymerization of fibrin and the activation of platelets,...
journal_title:Critical reviews in biochemistry and molecular biology
pub_type: 杂志文章,评审
doi:10.3109/10409238.2015.1050550
更新日期:2015-01-01 00:00:00
abstract::Glycosaminoglycans (GAGs) play an intricate role in the extracellular matrix (ECM), not only as soluble components and polyelectrolytes, but also by specific interactions with growth factors and other transient components of the ECM. Modifications of GAG chains, such as isomerization, sulfation, and acetylation, gener...
journal_title:Critical reviews in biochemistry and molecular biology
pub_type: 杂志文章,评审
doi:10.3109/10409239509083490
更新日期:1995-01-01 00:00:00
abstract::Translational control mechanisms are, besides transcriptional control and mRNA stability, the most determining for final protein levels. A large number of accessory factors that assist the ribosome during initiation, elongation, and termination of translation are required for protein synthesis. Cap-dependent translati...
journal_title:Critical reviews in biochemistry and molecular biology
pub_type: 杂志文章,评审
doi:10.1080/10409230902882090
更新日期:2009-07-01 00:00:00
abstract::This review focuses on how microbes live on CO as a sole source of carbon and energy and with CO by generating carbon monoxide as a metabolic intermediate. The use of CO is a property of organisms that use the Wood-L jungdahl pathway of autotrophic growth. The review discusses when CO metabolism originated, when and h...
journal_title:Critical reviews in biochemistry and molecular biology
pub_type: 杂志文章,评审
doi:10.1080/10409230490496577
更新日期:2004-05-01 00:00:00
abstract::For more than a century amyloid was considered to be an interesting, unique, but inconsequential pathologic entity that rarely caused significant clinical problems. We now recognize that amyloid is not one entity. In vivo it is a uniform organization of a disease, or process, specific protein co-deposited with a set o...
journal_title:Critical reviews in biochemistry and molecular biology
pub_type: 杂志文章,评审
doi:10.3109/10409239709082674
更新日期:1997-01-01 00:00:00
abstract::Renin, the first enzyme in the renin-angiotensin system, is critically important for the maintenance of blood pressure, and, therefore, as a target for antihypertensive therapy. The three-dimensional structure of renin would be an invaluable aid in understanding the functional properties of renin as well as in the des...
journal_title:Critical reviews in biochemistry and molecular biology
pub_type: 杂志文章,评审
doi:10.3109/10409239109081721
更新日期:1991-01-01 00:00:00
abstract::The purpose of this review is to provide an analysis of the latest developments on the functions of the carbon catabolite-repression 4-Not (Ccr4-Not) complex in regulating eukaryotic gene expression. Ccr4-Not is a nine-subunit protein complex that is conserved in sequence and function throughout the eukaryotic kingdom...
journal_title:Critical reviews in biochemistry and molecular biology
pub_type: 杂志文章,评审
doi:10.3109/10409238.2012.667214
更新日期:2012-07-01 00:00:00
abstract::Regulation of eukaryotic gene expression is far more complex than one might have imagined 30 years ago. However, progress towards understanding gene regulatory mechanisms has been rapid and comprehensive, which has made the integration of detailed observations into broadly connected concepts a challenge. This review a...
journal_title:Critical reviews in biochemistry and molecular biology
pub_type: 杂志文章,评审
doi:10.1080/10409230902858785
更新日期:2009-06-01 00:00:00
abstract::Rapid advances in redox systems biology are creating new opportunities to understand complexities of human disease and contributions of environmental exposures. New understanding of thiol-disulfide systems have occurred during the past decade as a consequence of the discoveries that thiol and disulfide systems are mai...
journal_title:Critical reviews in biochemistry and molecular biology
pub_type: 杂志文章,评审
doi:10.3109/10409238.2013.764840
更新日期:2013-03-01 00:00:00
abstract::The spontaneous and unregulated polymerization of actin filaments is inhibited in cells by actin monomer-binding proteins such as profilin and Tbeta4. Eukaryotic cells and certain pathogens use filament nucleators to stabilize actin polymerization nuclei, whose formation is rate-limiting. Known filament nucleators inc...
journal_title:Critical reviews in biochemistry and molecular biology
pub_type: 杂志文章,评审
doi:10.3109/10409230903277340
更新日期:2009-11-01 00:00:00
abstract::DNA damaging agents have been a cornerstone of cancer therapy for nearly a century. The discovery of many of these chemicals, particularly the alkylating agents, are deeply entwined with the development of poisonous materials originally intended for use in warfare. Over the last decades, their anti-proliferative effec...
journal_title:Critical reviews in biochemistry and molecular biology
pub_type: 杂志文章
doi:10.1080/10409238.2020.1869173
更新日期:2021-01-12 00:00:00
abstract::Ribonucleases (RNases) are mediators in most reactions of RNA metabolism. In recent years, there has been a surge of new information about RNases and the roles they play in cell physiology. In this review, a detailed description of bacterial RNases is presented, focusing primarily on those from Escherichia coli and Ba...
journal_title:Critical reviews in biochemistry and molecular biology
pub_type: 杂志文章,评审
doi:10.1080/10409238.2019.1651816
更新日期:2019-06-01 00:00:00
abstract::Ribonucleotides are the most abundant non-canonical nucleotides in the genome. Their vast presence and influence over genome biology is becoming increasingly appreciated. Here we review the recent progress made in understanding their genomic presence, incorporation characteristics and usefulness as biomarkers for poly...
journal_title:Critical reviews in biochemistry and molecular biology
pub_type: 杂志文章
doi:10.1080/10409238.2020.1869175
更新日期:2021-02-01 00:00:00
abstract::The demonstration that ribosomal peptide synthesis is a ribozyme-catalyzed reaction makes it almost certain that there was once an RNA World. The central problem for origin-of-life studies, therefore, is to understand how a protein-free RNA World became established on the primitive Earth. We first review the literatur...
journal_title:Critical reviews in biochemistry and molecular biology
pub_type: 杂志文章,评审
doi:10.1080/10409230490460765
更新日期:2004-03-01 00:00:00
abstract::Our understanding of the fundamental regulatory roles that tyrosine phosphatases play within cells has advanced significantly in the last two decades. Out-dated ideas that tyrosine phosphatases acts solely as the "off" switch counterbalancing the action of tyrosine kinases has proved to be flawed. PTP1B is the most ch...
journal_title:Critical reviews in biochemistry and molecular biology
pub_type: 杂志文章,评审
doi:10.3109/10409238.2013.819830
更新日期:2013-09-01 00:00:00
abstract::One of the experimental platforms to study programs increasing genetic diversity in cells under stressful or nondividing conditions is adaptive mutagenesis, also called stationary phase mutagenesis or stress-induced mutagenesis. In some model systems, there is evidence that mutagenesis occurs in genes that are activel...
journal_title:Critical reviews in biochemistry and molecular biology
pub_type: 杂志文章,评审
doi:10.1080/10409230701597717
更新日期:2007-09-01 00:00:00
abstract::Clathrin constitutes the coat of vesicles involved in three receptor-mediated intracellular transport pathways; the export of aggregated material from the trans-Golgi network for regulated secretion, the transfer of lysosomal hydrolases from the trans-Golgi network to lysosomes and receptor-mediated endocytosis at the...
journal_title:Critical reviews in biochemistry and molecular biology
pub_type: 杂志文章,评审
doi:10.3109/10409239309078441
更新日期:1993-01-01 00:00:00
abstract::Aptamers are single-stranded structured oligonucleotides (DNA or RNA) that can bind to a wide range of targets ("apatopes") with high affinity and specificity. These nucleic acid ligands, generated from pools of random-sequence by an in vitro selection process referred to as systematic evolution of ligands by exponent...
journal_title:Critical reviews in biochemistry and molecular biology
pub_type: 杂志文章,评审
doi:10.3109/10409238.2011.614592
更新日期:2011-12-01 00:00:00
abstract::The lytic transglycosylases (LTs) are bacterial enzymes that catalyze the non-hydrolytic cleavage of the peptidoglycan structures of the bacterial cell wall. They are not catalysts of glycan synthesis as might be surmised from their name. Notwithstanding the seemingly mundane reaction catalyzed by the LTs, their lytic...
journal_title:Critical reviews in biochemistry and molecular biology
pub_type: 杂志文章,评审
doi:10.1080/10409238.2017.1337705
更新日期:2017-10-01 00:00:00
abstract::Matrix metalloproteinases (MMPs) constitute a family of more than 20 endopeptidases. Identification of specific matrix and non-matrix components as MMP substrates showed that, aside from their initial role as extracellular matrix modifiers, MMPs play significant roles in highly complex processes such as the regulation...
journal_title:Critical reviews in biochemistry and molecular biology
pub_type: 杂志文章,评审
doi:10.1080/10409230701340019
更新日期:2007-05-01 00:00:00
abstract::The major intrinsic protein (MIP) of the bovine lens fiber cell membrane was the first member of the MIP family of proteins to be sequenced and characterized. It is probably a homotetramer with transmembrane channel activity that plays a role in lens biogenesis or maintenance. The polypeptide chain of each subunit may...
journal_title:Critical reviews in biochemistry and molecular biology
pub_type: 杂志文章,评审
doi:10.3109/10409239309086796
更新日期:1993-01-01 00:00:00
abstract::Following a brief introduction of cellular response to stimulation comprising leukocyte activation, three major areas are discussed: (1) the neutrophil oxidase; (2) myeloperoxidase (MPO)-dependent oxidative microbicidal reactions; and (3) MPO-independent oxidative reactions. Topics included in section (A) are current ...
journal_title:Critical reviews in biochemistry and molecular biology
pub_type: 杂志文章,评审
doi:10.3109/10409238909082555
更新日期:1989-01-01 00:00:00
abstract::Aldehydes are highly reactive molecules that may have a variety of effects on biological systems. They can be generated from a virtually limitless number of endogenous and exogenous sources. Although some aldehyde-mediated effects such as vision are beneficial, many effects are deleterious, including cytotoxicity, mut...
journal_title:Critical reviews in biochemistry and molecular biology
pub_type: 杂志文章,评审
doi:10.3109/10409239209082565
更新日期:1992-01-01 00:00:00
abstract::As we learn more about the biology of the Toll-like receptors (TLRs), a wide range of molecules that can activate this fascinating family of pattern recognition receptors emerges. In addition to conserved pathogenic components, endogenous danger signals created upon tissue damage are also sensed by TLRs. Detection of ...
journal_title:Critical reviews in biochemistry and molecular biology
pub_type: 杂志文章,评审
doi:10.3109/10409238.2015.1033511
更新日期:2015-01-01 00:00:00
abstract::Cilia and flagella serve as cellular antennae and propellers in various eukaryotic cells, and contain specific receptors and ion channels as well as components of axonemal microtubules and molecular motors to achieve their sensory and motile functions. Not only the bidirectional trafficking of specific proteins within...
journal_title:Critical reviews in biochemistry and molecular biology
pub_type: 杂志文章,评审
doi:10.1080/10409238.2020.1768206
更新日期:2020-04-01 00:00:00
abstract::Insulin-degrading enzyme (IDE) is a ubiquitous zinc peptidase of the inverzincin family, which has been initially discovered as the enzyme responsible for insulin catabolism; therefore, its involvement in the onset of diabetes has been largely investigated. However, further studies on IDE unraveled its ability to degr...
journal_title:Critical reviews in biochemistry and molecular biology
pub_type: 杂志文章,评审
doi:10.1080/10409238.2017.1337707
更新日期:2017-10-01 00:00:00