Nonenzymatic deamidation of asparaginyl and glutaminyl residues in proteins.

Abstract:

:Some asparagine and glutamine residues in proteins undergo deamidation to aspartate and glutamate with rates that depend upon the sequence and higher-order structure of the protein. Functional groups within the protein can catalyze this reaction, acting as general acids, bases, or stabilizers of the transition state. Information from specific proteins that deamidate and analysis of protein sequence and structure data bases suggest that asparagine and glutamine lability has been a selective pressure in the evolution of protein sequence and folding. Asparagine and glutamine deamidation can affect protein structure and function in natural and engineered mutant sequences, and may play a role in the regulation of protein folding, protein breakdown, and aging.

authors

Wright HT

doi

10.3109/10409239109081719

subject

Has Abstract

pub_date

1991-01-01 00:00:00

pages

1-52

issue

1

eissn

1040-9238

issn

1549-7798

journal_volume

26

pub_type

杂志文章,评审
  • The MIP family of integral membrane channel proteins: sequence comparisons, evolutionary relationships, reconstructed pathway of evolution, and proposed functional differentiation of the two repeated halves of the proteins.

    abstract::The major intrinsic protein (MIP) of the bovine lens fiber cell membrane was the first member of the MIP family of proteins to be sequenced and characterized. It is probably a homotetramer with transmembrane channel activity that plays a role in lens biogenesis or maintenance. The polypeptide chain of each subunit may...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.3109/10409239309086796

    authors: Reizer J,Reizer A,Saier MH Jr

    更新日期:1993-01-01 00:00:00

  • Adaptive mutation in Saccharomyces cerevisiae.

    abstract::Adaptive mutation is a generic term for processes that allow individual cells of nonproliferating cell populations to acquire advantageous mutations and thereby to overcome the strong selective pressure of proliferation-limiting environmental conditions. Prerequisites for an occurrence of adaptive mutation are that th...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.1080/10409230701507773

    authors: Heidenreich E

    更新日期:2007-07-01 00:00:00

  • S6 phosphorylation and the p70s6k/p85s6k.

    abstract::Activation of cell growth leads to the multiple phosphorylation of 40S ribosomal protein S6. The kinase responsible for controling this event is termed p70s6k/p85s6k. Both isoforms of the kinase are derived from a common gene activated by a complex set of phosphorylation events; each resides in a unique cellular compa...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.3109/10409239409083485

    authors: Ferrari S,Thomas G

    更新日期:1994-01-01 00:00:00

  • Multiple functions of insulin-degrading enzyme: a metabolic crosslight?

    abstract::Insulin-degrading enzyme (IDE) is a ubiquitous zinc peptidase of the inverzincin family, which has been initially discovered as the enzyme responsible for insulin catabolism; therefore, its involvement in the onset of diabetes has been largely investigated. However, further studies on IDE unraveled its ability to degr...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.1080/10409238.2017.1337707

    authors: Tundo GR,Sbardella D,Ciaccio C,Grasso G,Gioia M,Coletta A,Polticelli F,Di Pierro D,Milardi D,Van Endert P,Marini S,Coletta M

    更新日期:2017-10-01 00:00:00

  • A beta amyloidogenesis: unique, or variation on a systemic theme?

    abstract::For more than a century amyloid was considered to be an interesting, unique, but inconsequential pathologic entity that rarely caused significant clinical problems. We now recognize that amyloid is not one entity. In vivo it is a uniform organization of a disease, or process, specific protein co-deposited with a set o...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.3109/10409239709082674

    authors: Kisilevsky R,Fraser PE

    更新日期:1997-01-01 00:00:00

  • Metabolic regulation via enzyme filamentation.

    abstract::Determining the mechanisms of enzymatic regulation is central to the study of cellular metabolism. Regulation of enzyme activity via polymerization-mediated strategies has been shown to be widespread, and plays a vital role in mediating cellular homeostasis. In this review, we begin with an overview of the filamentati...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.3109/10409238.2016.1172555

    authors: Aughey GN,Liu JL

    更新日期:2015-07-01 00:00:00

  • Architecture of the IFT ciliary trafficking machinery and interplay between its components.

    abstract::Cilia and flagella serve as cellular antennae and propellers in various eukaryotic cells, and contain specific receptors and ion channels as well as components of axonemal microtubules and molecular motors to achieve their sensory and motile functions. Not only the bidirectional trafficking of specific proteins within...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.1080/10409238.2020.1768206

    authors: Nakayama K,Katoh Y

    更新日期:2020-04-01 00:00:00

  • Lytic transglycosylases: concinnity in concision of the bacterial cell wall.

    abstract::The lytic transglycosylases (LTs) are bacterial enzymes that catalyze the non-hydrolytic cleavage of the peptidoglycan structures of the bacterial cell wall. They are not catalysts of glycan synthesis as might be surmised from their name. Notwithstanding the seemingly mundane reaction catalyzed by the LTs, their lytic...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.1080/10409238.2017.1337705

    authors: Dik DA,Marous DR,Fisher JF,Mobashery S

    更新日期:2017-10-01 00:00:00

  • The molecular era of protein S-acylation: spotlight on structure, mechanisms, and dynamics.

    abstract::S-Acylation (commonly referred to as S-palmitoylation) is a post-translational modification consisting in the covalent attachment of an acyl chain to a cysteine residue of the target protein. The lability of the resulting thioester bond gives S-acylation an essential characteristic: its reversibility. S-acylation dyna...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.1080/10409238.2018.1488804

    authors: Zaballa ME,van der Goot FG

    更新日期:2018-08-01 00:00:00

  • Utility of low-copy nuclear gene sequences in plant phylogenetics.

    abstract::Low-copy nuclear genes in plants are a rich source of phylogenetic information. They hold a great potential to improve the robustness of phylogenetic reconstruction at all taxonomic levels, especially where universal markers such as cpDNA and nrDNA are unable to generate strong phylogenetic hypotheses. Low-copy nuclea...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.1080/10409230290771474

    authors: Sang T

    更新日期:2002-01-01 00:00:00

  • Bacterial small RNA regulators.

    abstract::Small regulatory RNAs can modify the activity of proteins and the stability and translation of mRNAs. They have now been found in a wide range of organisms, and can play previously unsuspected critical regulatory roles. The bacterial small RNAs include two major classes. The largest family(with at least 20 members in ...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.1080/10409230590918702

    authors: Majdalani N,Vanderpool CK,Gottesman S

    更新日期:2005-03-01 00:00:00

  • From canonical to modified nucleotides: balancing translation and metabolism.

    abstract::Every type of nucleic acid in cells may undergo some kind of post-replicative or post-transcriptional chemical modification. Recent evidence has highlighted their importance in biology and their chemical complexity. In the following pages, we will describe new discoveries of modifications, with a focus on tRNA and mRN...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章

    doi:10.1080/10409238.2020.1818685

    authors: Accornero F,Ross RL,Alfonzo JD

    更新日期:2020-12-01 00:00:00

  • The complexity and regulation of repair of alkylation damage to nucleic acids.

    abstract::DNA damaging agents have been a cornerstone of cancer therapy for nearly a century. The discovery of many of these chemicals, particularly the alkylating agents, are deeply entwined with the development of poisonous materials originally intended for use in warfare. Over the last decades, their anti-proliferative effec...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章

    doi:10.1080/10409238.2020.1869173

    authors: Tsao N,Schärer OD,Mosammaparast N

    更新日期:2021-01-12 00:00:00

  • Oligonucleotide/oligosaccharide-binding fold proteins: a growing family of genome guardians.

    abstract::The maintenance of genomic stability relies on the coordinated action of a number of cellular processes, including activation of the DNA-damage checkpoint, DNA replication, DNA repair, and telomere homeostasis. Many proteins involved in these cellular processes use different types of functional modules to regulate and...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.3109/10409238.2010.488216

    authors: Flynn RL,Zou L

    更新日期:2010-08-01 00:00:00

  • Dynamic structure of plasma fibronectin.

    abstract::Fibronectin is a large vertebrate glycoprotein that is found in soluble and insoluble forms and involved in diverse processes. Protomeric fibronectin is a dimer of subunits, each of which comprises 29-31 modules - 12 type I, two type II and 15-17 type III. Plasma fibronectin is secreted by hepatocytes and circulates i...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.1080/10409238.2016.1184224

    authors: Maurer LM,Ma W,Mosher DF

    更新日期:2015-07-01 00:00:00

  • Specificity of reversible ADP-ribosylation and regulation of cellular processes.

    abstract::Proper and timely regulation of cellular processes is fundamental to the overall health and viability of organisms across all kingdoms of life. Thus, organisms have evolved multiple highly dynamic and complex biochemical signaling cascades in order to adapt and survive diverse challenges. One such method of conferring...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.1080/10409238.2017.1394265

    authors: Crawford K,Bonfiglio JJ,Mikoč A,Matic I,Ahel I

    更新日期:2018-02-01 00:00:00

  • Rab-dependent cellular trafficking and amyotrophic lateral sclerosis.

    abstract::Rab GTPases are becoming increasingly implicated in neurodegenerative disorders, although their role in amyotrophic lateral sclerosis (ALS) has been somewhat overlooked. However, dysfunction of intracellular transport is gaining increasing attention as a pathogenic mechanism in ALS. Many previous studies have focused ...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.1080/10409238.2018.1553926

    authors: Parakh S,Perri ER,Jagaraj CJ,Ragagnin AMG,Atkin JD

    更新日期:2018-12-01 00:00:00

  • Advances in Toll-like receptor biology: Modes of activation by diverse stimuli.

    abstract::As we learn more about the biology of the Toll-like receptors (TLRs), a wide range of molecules that can activate this fascinating family of pattern recognition receptors emerges. In addition to conserved pathogenic components, endogenous danger signals created upon tissue damage are also sensed by TLRs. Detection of ...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.3109/10409238.2015.1033511

    authors: Bryant CE,Gay NJ,Heymans S,Sacre S,Schaefer L,Midwood KS

    更新日期:2015-01-01 00:00:00

  • AMPK inhibition in health and disease.

    abstract::All living organisms depend on dynamic mechanisms that repeatedly reassess the status of amassed energy, in order to adapt energy supply to demand. The AMP-activated protein kinase (AMPK) alphabetagamma heterotrimer has emerged as an important integrator of signals managing energy balance. Control of AMPK activity inv...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.3109/10409238.2010.488215

    authors: Viollet B,Horman S,Leclerc J,Lantier L,Foretz M,Billaud M,Giri S,Andreelli F

    更新日期:2010-08-01 00:00:00

  • How it all starts: Initiation of the clotting cascade.

    abstract::The plasma coagulation system in mammalian blood consists of a cascade of enzyme activation events in which serine proteases activate the proteins (proenzymes and procofactors) in the next step of the cascade via limited proteolysis. The ultimate outcome is the polymerization of fibrin and the activation of platelets,...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.3109/10409238.2015.1050550

    authors: Smith SA,Travers RJ,Morrissey JH

    更新日期:2015-01-01 00:00:00

  • Comparative modeling of proteins in the design of novel renin inhibitors.

    abstract::Renin, the first enzyme in the renin-angiotensin system, is critically important for the maintenance of blood pressure, and, therefore, as a target for antihypertensive therapy. The three-dimensional structure of renin would be an invaluable aid in understanding the functional properties of renin as well as in the des...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.3109/10409239109081721

    authors: Hutchins C,Greer J

    更新日期:1991-01-01 00:00:00

  • Thiol/disulfide redox states in signaling and sensing.

    abstract::Rapid advances in redox systems biology are creating new opportunities to understand complexities of human disease and contributions of environmental exposures. New understanding of thiol-disulfide systems have occurred during the past decade as a consequence of the discoveries that thiol and disulfide systems are mai...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.3109/10409238.2013.764840

    authors: Go YM,Jones DP

    更新日期:2013-03-01 00:00:00

  • Chimeric aptamers in cancer cell-targeted drug delivery.

    abstract::Aptamers are single-stranded structured oligonucleotides (DNA or RNA) that can bind to a wide range of targets ("apatopes") with high affinity and specificity. These nucleic acid ligands, generated from pools of random-sequence by an in vitro selection process referred to as systematic evolution of ligands by exponent...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.3109/10409238.2011.614592

    authors: Kanwar JR,Roy K,Kanwar RK

    更新日期:2011-12-01 00:00:00

  • Functional O-GlcNAc modifications: implications in molecular regulation and pathophysiology.

    abstract::O-linked β-N-acetylglucosamine (O-GlcNAc) is a regulatory post-translational modification of intracellular proteins. The dynamic and inducible cycling of the modification is governed by O-GlcNAc transferase (OGT) and O-GlcNAcase (OGA) in response to UDP-GlcNAc levels in the hexosamine biosynthetic pathway (HBP). Due t...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.3109/10409238.2014.884535

    authors: Vaidyanathan K,Durning S,Wells L

    更新日期:2014-03-01 00:00:00

  • The role of phosphatidylcholine and choline metabolites to cell proliferation and survival.

    abstract::The reorganization of metabolic pathways in cancer facilitates the flux of carbon and reducing equivalents into anabolic pathways at the expense of oxidative phosphorylation. This provides rapidly dividing cells with the necessary precursors for membrane, protein and nucleic acid synthesis. A fundamental metabolic per...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.3109/10409238.2012.735643

    authors: Ridgway ND

    更新日期:2013-01-01 00:00:00

  • The role of RecQ helicases in non-homologous end-joining.

    abstract::DNA double-strand breaks are highly toxic DNA lesions that cause genomic instability, if not efficiently repaired. RecQ helicases are a family of highly conserved proteins that maintain genomic stability through their important roles in several DNA repair pathways, including DNA double-strand break repair. Double-stra...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.3109/10409238.2014.942450

    authors: Keijzers G,Maynard S,Shamanna RA,Rasmussen LJ,Croteau DL,Bohr VA

    更新日期:2014-11-01 00:00:00

  • Torsins: not your typical AAA+ ATPases.

    abstract::Torsin ATPases (Torsins) belong to the widespread AAA+ (ATPases associated with a variety of cellular activities) family of ATPases, which share structural similarity but have diverse cellular functions. Torsins are outliers in this family because they lack many characteristics of typical AAA+ proteins, and they are t...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.3109/10409238.2015.1091804

    authors: Rose AE,Brown RS,Schlieker C

    更新日期:2015-01-01 00:00:00

  • Aldehyde dehydrogenases and their role in carcinogenesis.

    abstract::Aldehydes are highly reactive molecules that may have a variety of effects on biological systems. They can be generated from a virtually limitless number of endogenous and exogenous sources. Although some aldehyde-mediated effects such as vision are beneficial, many effects are deleterious, including cytotoxicity, mut...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.3109/10409239209082565

    authors: Lindahl R

    更新日期:1992-01-01 00:00:00

  • FeII/alpha-ketoglutarate-dependent hydroxylases and related enzymes.

    abstract::FeII/alpha-ketoglutarate (alphaKG)-dependent hydroxylases catalyze an amazing diversity of reactions that result in protein side-chain modifications, repair of alkylated DNA/RNA, biosynthesis of antibiotics and plant products, metabolism related to lipids, and biodegradation of a variety of compounds. These enzymes po...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章,评审

    doi:10.1080/10409230490440541

    authors: Hausinger RP

    更新日期:2004-01-01 00:00:00

  • RAGE and its ligands: from pathogenesis to therapeutics.

    abstract::Receptor for advanced glycation end products (RAGE) is an immunoglobulin-like receptor present on cell surface. RAGE binds to an array of structurally diverse ligands, acts as a pattern recognition receptor (PRR) and is expressed on cells of different origin performing different functions. RAGE ligation leads to the i...

    journal_title:Critical reviews in biochemistry and molecular biology

    pub_type: 杂志文章

    doi:10.1080/10409238.2020.1819194

    authors: Jangde N,Ray R,Rai V

    更新日期:2020-12-01 00:00:00