Transcriptomic signatures of NK cells suggest impaired responsiveness in HIV-1 infection and increased activity post-vaccination.

Abstract:

:Natural killer (NK) cells limit viral replication by direct recognition of infected cells, antibody-dependent cellular cytotoxicity (ADCC), and releasing cytokines. Although growing evidence supports NK cell antiviral immunity in HIV-1 infection, further knowledge of their response is necessary. Here we show that NK cells responding to models of direct cell recognition, ADCC, and cytokine activation have unique transcriptional fingerprints. Compared with healthy volunteers, individuals with chronic HIV-1 infection have higher expression of genes commonly associated with activation, and lower expression of genes associated with direct cell recognition and cytokine stimulation in their NK cells. By contrast, NK cell transcriptional profiles of individuals receiving a modified vaccinia Ankara (MVA) vectored HIV-1 vaccine show upregulation of genes associated with direct cell recognition. These findings demonstrate that targeted transcriptional profiling provides a sensitive assessment of NK cell activity, which helps understand how NK cells respond to viral infections and vaccination.

journal_name

Nat Commun

journal_title

Nature communications

authors

Costanzo MC,Kim D,Creegan M,Lal KG,Ake JA,Currier JR,Streeck H,Robb ML,Michael NL,Bolton DL,Steers NJ,Eller MA

doi

10.1038/s41467-018-03618-w

subject

Has Abstract

pub_date

2018-03-23 00:00:00

pages

1212

issue

1

issn

2041-1723

pii

10.1038/s41467-018-03618-w

journal_volume

9

pub_type

杂志文章
  • eIF6 coordinates insulin sensitivity and lipid metabolism by coupling translation to transcription.

    abstract::Insulin regulates glycaemia, lipogenesis and increases mRNA translation. Cells with reduced eukaryotic initiation factor 6 (eIF6) do not increase translation in response to insulin. The role of insulin-regulated translation is unknown. Here we show that reduction of insulin-regulated translation in mice heterozygous f...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms9261

    authors: Brina D,Miluzio A,Ricciardi S,Clarke K,Davidsen PK,Viero G,Tebaldi T,Offenhäuser N,Rozman J,Rathkolb B,Neschen S,Klingenspor M,Wolf E,Gailus-Durner V,Fuchs H,Hrabe de Angelis M,Quattrone A,Falciani F,Biffo S

    更新日期:2015-09-18 00:00:00

  • Soil bacterial diversity mediated by microscale aqueous-phase processes across biomes.

    abstract::Soil bacterial diversity varies across biomes with potential impacts on soil ecological functioning. Here, we incorporate key factors that affect soil bacterial abundance and diversity across spatial scales into a mechanistic modeling framework considering soil type, carbon inputs and climate towards predicting soil b...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-13966-w

    authors: Bickel S,Or D

    更新日期:2020-01-08 00:00:00

  • PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes.

    abstract::New microbial genomes are constantly being sequenced, and it is crucial to accurately determine their taxonomic identities and evolutionary relationships. Here we report PhyloPhlAn, a new method to assign microbial phylogeny and putative taxonomy using >400 proteins optimized from among 3,737 genomes. This method meas...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms3304

    authors: Segata N,Börnigen D,Morgan XC,Huttenhower C

    更新日期:2013-01-01 00:00:00

  • Mitochondrial oxidative capacity and NAD+ biosynthesis are reduced in human sarcopenia across ethnicities.

    abstract::The causes of impaired skeletal muscle mass and strength during aging are well-studied in healthy populations. Less is known on pathological age-related muscle wasting and weakness termed sarcopenia, which directly impacts physical autonomy and survival. Here, we compare genome-wide transcriptional changes of sarcopen...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-13694-1

    authors: Migliavacca E,Tay SKH,Patel HP,Sonntag T,Civiletto G,McFarlane C,Forrester T,Barton SJ,Leow MK,Antoun E,Charpagne A,Seng Chong Y,Descombes P,Feng L,Francis-Emmanuel P,Garratt ES,Giner MP,Green CO,Karaz S,Kothandaram

    更新日期:2019-12-20 00:00:00

  • Modulating the hierarchical fibrous assembly of Au nanoparticles with atomic precision.

    abstract::The ability to modulate nanoparticle (NP) assemblies with atomic precision is still lacking, which hinders us from creating hierarchical NP organizations with desired properties. In this work, a hierarchical fibrous (1D to 3D) assembly of Au NPs (21-gold atom, Au21) is realized and further modulated with atomic precis...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-06395-8

    authors: Li Q,Russell JC,Luo TY,Roy X,Rosi NL,Zhu Y,Jin R

    更新日期:2018-09-24 00:00:00

  • Meningeal lymphatic dysfunction exacerbates traumatic brain injury pathogenesis.

    abstract::Traumatic brain injury (TBI) is a leading global cause of death and disability. Here we demonstrate in an experimental mouse model of TBI that mild forms of brain trauma cause severe deficits in meningeal lymphatic drainage that begin within hours and last out to at least one month post-injury. To investigate a mechan...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-18113-4

    authors: Bolte AC,Dutta AB,Hurt ME,Smirnov I,Kovacs MA,McKee CA,Ennerfelt HE,Shapiro D,Nguyen BH,Frost EL,Lammert CR,Kipnis J,Lukens JR

    更新日期:2020-09-10 00:00:00

  • Polarization of M2 macrophages requires Lamtor1 that integrates cytokine and amino-acid signals.

    abstract::Macrophages play crucial roles in host defence and tissue homoeostasis, processes in which both environmental stimuli and intracellularly generated metabolites influence activation of macrophages. Activated macrophages are classified into M1 and M2 macrophages. It remains unclear how intracellular nutrition sufficienc...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms13130

    authors: Kimura T,Nada S,Takegahara N,Okuno T,Nojima S,Kang S,Ito D,Morimoto K,Hosokawa T,Hayama Y,Mitsui Y,Sakurai N,Sarashina-Kida H,Nishide M,Maeda Y,Takamatsu H,Okuzaki D,Yamada M,Okada M,Kumanogoh A

    更新日期:2016-10-12 00:00:00

  • Twin-induced one-dimensional homojunctions yield high quantum efficiency for solar hydrogen generation.

    abstract::Efficient charge separation is of crucial importance for the improvement of photocatalytic activity for solar hydrogen evolution. Here we report efficient photo-generated charge separation by twin-induced one-dimensional homojunctions with type-II staggered band alignment, using a ternary chalcogenate, i.e. Cd0.5Zn0.5...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms3278

    authors: Liu M,Jing D,Zhou Z,Guo L

    更新日期:2013-01-01 00:00:00

  • Deep long period volcanic earthquakes generated by degassing of volatile-rich basaltic magmas.

    abstract::Deep long-period (DLP) earthquakes observed beneath active volcanoes are sometimes considered as precursors to eruptions. Their origin remains, however, unclear. Here, we present a possible DLP generating mechanism related to the rapid growth of gas bubbles in response to the slow decompression of over-saturated magma...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-17759-4

    authors: Melnik O,Lyakhovsky V,Shapiro NM,Galina N,Bergal-Kuvikas O

    更新日期:2020-08-06 00:00:00

  • Exploration of sensory and spinal neurons expressing gastrin-releasing peptide in itch and pain related behaviors.

    abstract::Gastrin-releasing peptide (GRP) functions as a neurotransmitter for non-histaminergic itch, but its site of action (sensory neurons vs spinal cord) remains controversial. To determine the role of GRP in sensory neurons, we generated a floxed Grp mouse line. We found that conditional knockout of Grp in sensory neurons ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-15230-y

    authors: Barry DM,Liu XT,Liu B,Liu XY,Gao F,Zeng X,Liu J,Yang Q,Wilhelm S,Yin J,Tao A,Chen ZF

    更新日期:2020-03-13 00:00:00

  • Prothymosin α overexpression contributes to the development of pulmonary emphysema.

    abstract::Emphysema is one of the disease conditions that comprise chronic obstructive pulmonary disease. Prothymosin α transgenic mice exhibit an emphysema phenotype, but the pathophysiological role of prothymosin α in emphysema remains unclear. Here we show that prothymosin α contributes to the pathogenesis of emphysema by in...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms2906

    authors: Su BH,Tseng YL,Shieh GS,Chen YC,Shiang YC,Wu P,Li KJ,Yen TH,Shiau AL,Wu CL

    更新日期:2013-01-01 00:00:00

  • Author Correction: The rapid electrochemical activation of MoTe2 for the hydrogen evolution reaction.

    abstract::An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...

    journal_title:Nature communications

    pub_type: 已发布勘误

    doi:10.1038/s41467-019-13337-5

    authors: McGlynn JC,Dankwort T,Kienle L,Bandeira NAG,Fraser JP,Gibson EK,Cascallana-Matías I,Kamarás K,Symes MD,Miras HN,Ganin AY

    更新日期:2019-11-20 00:00:00

  • Improving mass spectrometry analysis of protein structures with arginine-selective chemical cross-linkers.

    abstract::Chemical cross-linking of proteins coupled with mass spectrometry analysis (CXMS) is widely used to study protein-protein interactions (PPI), protein structures, and even protein dynamics. However, structural information provided by CXMS is still limited, partly because most CXMS experiments use lysine-lysine (K-K) cr...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-11917-z

    authors: Jones AX,Cao Y,Tang YL,Wang JH,Ding YH,Tan H,Chen ZL,Fang RQ,Yin J,Chen RC,Zhu X,She Y,Huang N,Shao F,Ye K,Sun RX,He SM,Lei X,Dong MQ

    更新日期:2019-09-02 00:00:00

  • A stabilizing factor for mitochondrial respiratory supercomplex assembly regulates energy metabolism in muscle.

    abstract::The mitochondrial respiratory chain is essential for oxidative phosphorylation and comprises multiple complexes, including cytochrome c oxidase, assembled in macromolecular supercomplexes. Little is known about factors that contribute to supercomplex organization. Here we identify COX7RP as a factor that promotes supe...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms3147

    authors: Ikeda K,Shiba S,Horie-Inoue K,Shimokata K,Inoue S

    更新日期:2013-01-01 00:00:00

  • Licensing MLH1 sites for crossover during meiosis.

    abstract::During meiosis, homologous chromosomes synapse and recombine at sites marked by the binding of the mismatch repair protein MLH1. In hexaploid wheat, the Ph1 locus has a major effect on whether crossover occurs between homologues or between related homoeologues. Here we report that--in wheat-rye hybrids where homologue...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms5580

    authors: Martín AC,Shaw P,Phillips D,Reader S,Moore G

    更新日期:2014-08-06 00:00:00

  • Social support reduces stress hormone levels in wild chimpanzees across stressful events and everyday affiliations.

    abstract::Stress is a major cause of poor health and mortality in humans and other social mammals. Close social bonds buffer stress, however much of the underlying physiological mechanism remains unknown. Here, we test two key hypotheses: bond partner effects occur only during stress (social buffering) or generally throughout d...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms13361

    authors: Wittig RM,Crockford C,Weltring A,Langergraber KE,Deschner T,Zuberbühler K

    更新日期:2016-11-01 00:00:00

  • A strategy to discover new organizers identifies a putative heart organizer.

    abstract::Organizers are regions of the embryo that can both induce new fates and impart pattern on other regions. So far, surprisingly few organizers have been discovered, considering the number of patterned tissue types generated during development. This may be because their discovery has relied on transplantation and ablatio...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms12656

    authors: Anderson C,Khan MAF,Wong F,Solovieva T,Oliveira NMM,Baldock RA,Tickle C,Burt DW,Stern CD

    更新日期:2016-08-25 00:00:00

  • TET2 directs mammary luminal cell differentiation and endocrine response.

    abstract::Epigenetic regulation plays an important role in governing stem cell fate and tumorigenesis. Lost expression of a key DNA demethylation enzyme TET2 is associated with human cancers and has been linked to stem cell traits in vitro; however, whether and how TET2 regulates mammary stem cell fate and mammary tumorigenesis...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-18129-w

    authors: Kim MR,Wu MJ,Zhang Y,Yang JY,Chang CJ

    更新日期:2020-09-15 00:00:00

  • Ecological responses to experimental glacier-runoff reduction in alpine rivers.

    abstract::Glacier retreat is a worldwide phenomenon with important consequences for the hydrological cycle and downstream ecosystem structure and functioning. To determine the effects of glacier retreat on aquatic communities, we conducted a 4-year flow manipulation in a tropical glacier-fed stream. Compared with an adjacent re...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms12025

    authors: Cauvy-Fraunié S,Andino P,Espinosa R,Calvez R,Jacobsen D,Dangles O

    更新日期:2016-06-24 00:00:00

  • DRP1-mediated mitochondrial shape controls calcium homeostasis and muscle mass.

    abstract::Mitochondrial quality control is essential in highly structured cells such as neurons and muscles. In skeletal muscle the mitochondrial fission proteins are reduced in different physiopathological conditions including ageing sarcopenia, cancer cachexia and chemotherapy-induced muscle wasting. However, whether mitochon...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-10226-9

    authors: Favaro G,Romanello V,Varanita T,Andrea Desbats M,Morbidoni V,Tezze C,Albiero M,Canato M,Gherardi G,De Stefani D,Mammucari C,Blaauw B,Boncompagni S,Protasi F,Reggiani C,Scorrano L,Salviati L,Sandri M

    更新日期:2019-06-12 00:00:00

  • ARMMs as a versatile platform for intracellular delivery of macromolecules.

    abstract::Majority of disease-modifying therapeutic targets are restricted to the intracellular space and are therefore not druggable using existing biologic modalities. The ability to efficiently deliver macromolecules inside target cells or tissues would greatly expand the current landscape of therapeutic targets for future g...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-03390-x

    authors: Wang Q,Yu J,Kadungure T,Beyene J,Zhang H,Lu Q

    更新日期:2018-03-06 00:00:00

  • Tuning thermal conductivity in molybdenum disulfide by electrochemical intercalation.

    abstract::Thermal conductivity of two-dimensional (2D) materials is of interest for energy storage, nanoelectronics and optoelectronics. Here, we report that the thermal conductivity of molybdenum disulfide can be modified by electrochemical intercalation. We observe distinct behaviour for thin films with vertically aligned bas...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms13211

    authors: Zhu G,Liu J,Zheng Q,Zhang R,Li D,Banerjee D,Cahill DG

    更新日期:2016-10-21 00:00:00

  • Imaging dynamic fingerprints of competing E2 and SN2 reactions.

    abstract::The competition between bimolecular nucleophilic substitution and base-induced elimination is of fundamental importance for the synthesis of pure samples in organic chemistry. Many factors that influence this competition have been identified over the years, but the underlying atomistic dynamics have remained difficult...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-017-00065-x

    authors: Carrascosa E,Meyer J,Zhang J,Stei M,Michaelsen T,Hase WL,Yang L,Wester R

    更新日期:2017-06-21 00:00:00

  • Synthesis of tetrasubstituted 1-silyloxy-3-aminobutadienes and chemistry beyond Diels-Alder reactions.

    abstract::Electron-rich dienes have revolutionized the synthesis of complex compounds since the discovery of the legendary Diels-Alder cycloaddition reaction. This highly efficient bond-forming process has served as a fundamental strategy to assemble many structurally formidable molecules. Amino silyloxy butadienes are arguably...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms7913

    authors: Li X,Peng S,Li L,Huang Y

    更新日期:2015-04-21 00:00:00

  • Enhancing electric-field control of ferromagnetism through nanoscale engineering of high-Tc MnxGe1-x nanomesh.

    abstract::Voltage control of magnetism in ferromagnetic semiconductor has emerged as an appealing solution to significantly reduce the power dissipation and variability beyond current CMOS technology. However, it has been proven to be very challenging to achieve a candidate with high Curie temperature (Tc), controllable ferroma...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms12866

    authors: Nie T,Tang J,Kou X,Gen Y,Lee S,Zhu X,He Q,Chang LT,Murata K,Fan Y,Wang KL

    更新日期:2016-10-20 00:00:00

  • Photonic polarization gears for ultra-sensitive angular measurements.

    abstract::Quantum metrology bears a great promise in enhancing measurement precision, but is unlikely to become practical in the near future. Its concepts can nevertheless inspire classical or hybrid methods of immediate value. Here we demonstrate NOON-like photonic states of m quanta of angular momentum up to m=100, in a setup...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms3432

    authors: D'Ambrosio V,Spagnolo N,Del Re L,Slussarenko S,Li Y,Kwek LC,Marrucci L,Walborn SP,Aolita L,Sciarrino F

    更新日期:2013-01-01 00:00:00

  • Direct electrical stimulation of the premotor cortex shuts down awareness of voluntary actions.

    abstract::A challenge for neuroscience is to understand the conscious and unconscious processes underlying construction of willed actions. We investigated the neural substrate of human motor awareness during awake brain surgery. In a first experiment, awake patients performed a voluntary hand motor task and verbally monitored t...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-14517-4

    authors: Fornia L,Puglisi G,Leonetti A,Bello L,Berti A,Cerri G,Garbarini F

    更新日期:2020-02-04 00:00:00

  • Competition for nutrients and its role in controlling immune responses.

    abstract::Changes in cellular metabolism are associated with the activation of diverse immune subsets. These changes are fuelled by nutrients including glucose, amino acids and fatty acids, and are closely linked to immune cell fate and function. An emerging concept is that nutrients are not equally available to all immune cell...

    journal_title:Nature communications

    pub_type: 杂志文章,评审

    doi:10.1038/s41467-019-10015-4

    authors: Kedia-Mehta N,Finlay DK

    更新日期:2019-05-09 00:00:00

  • Global patterns of the leaf economics spectrum in wetlands.

    abstract::The leaf economics spectrum (LES) describes consistent correlations among a variety of leaf traits that reflect a gradient from conservative to acquisitive plant strategies. So far, whether the LES holds in wetland plants at a global scale has been unclear. Using data on 365 wetland species from 151 studies, we find t...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-18354-3

    authors: Pan Y,Cieraad E,Armstrong J,Armstrong W,Clarkson BR,Colmer TD,Pedersen O,Visser EJW,Voesenek LACJ,van Bodegom PM

    更新日期:2020-09-09 00:00:00

  • Merging rhodium-catalysed C-H activation and hydroamination in a highly selective [4+2] imine/alkyne annulation.

    abstract::Catalytic C-H activation and hydroamination represent two important strategies for eco-friendly chemical synthesis with high atom efficiency and reduced waste production. Combining both C-H activation and hydroamination in a cascade process, preferably with a single catalyst, would allow rapid access to valuable nitro...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms11506

    authors: Manan RS,Zhao P

    更新日期:2016-06-20 00:00:00