An engineered opsin monomer scrambles phospholipids.

Abstract:

:The G protein-coupled receptor opsin is a phospholipid scramblase that facilitates rapid transbilayer phospholipid exchange in liposomes. The mechanism by which opsin scrambles lipids is unknown. It has been proposed that lipid translocation may occur at protein-protein interfaces of opsin dimers. To test this possibility, we rationally engineered QUAD opsin by tryptophan substitution of four lipid-facing residues in transmembrane helix 4 (TM4) that is known to be important for dimerization. Atomistic molecular dynamics simulations of wild type and QUAD opsins combined with continuum modeling revealed that the tryptophan substitutions lower the energetically unfavorable residual hydrophobic mismatch between TM4 and the membrane, reducing the drive of QUAD opsin to dimerize. We purified thermostable wild type and QUAD opsins, with or without a SNAP tag for fluorescence labeling. Single molecule fluorescence measurements of purified SNAP-tagged constructs revealed that both proteins are monomers. Fluorescence-based activity assays indicated that QUAD opsin is a fully functional scramblase. However, unlike wild type opsin which dimerizes en route to insertion into phospholipid vesicles, QUAD opsin reconstitutes as a monomer. We conclude that an engineered opsin monomer can scramble phospholipids, and that the lipid-exposed face of TM4 is unlikely to contribute to transbilayer phospholipid exchange.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Pandey K,Ploier B,Goren MA,Levitz J,Khelashvili G,Menon AK

doi

10.1038/s41598-017-16842-z

subject

Has Abstract

pub_date

2017-12-01 00:00:00

pages

16741

issue

1

issn

2045-2322

pii

10.1038/s41598-017-16842-z

journal_volume

7

pub_type

杂志文章
  • Toll-like receptor 7 deficiency protects apolipoprotein E-deficient mice from diet-induced atherosclerosis.

    abstract::Toll-like receptor 7 (TLR7) mediates autoantigen and viral RNA-induced cytokine production. Increased TLR7 expression in human atherosclerotic lesions suggests its involvement in atherogenesis. Here we demonstrated TLR7 expression in macrophages, smooth muscle cells (SMCs), and endothelial cells from mouse atheroscler...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-00977-0

    authors: Liu CL,Santos MM,Fernandes C,Liao M,Iamarene K,Zhang JY,Sukhova GK,Shi GP

    更新日期:2017-04-12 00:00:00

  • Improved motor performance in patients with acute stroke using the optimal individual attentional strategy.

    abstract::It is believed that motor performance improves when individuals direct attention to movement outcome (external focus, EF) rather than to body movement itself (internal focus, IF). However, our previous study found that an optimal individual attentional strategy depended on motor imagery ability. We explored whether th...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep40592

    authors: Sakurada T,Nakajima T,Morita M,Hirai M,Watanabe E

    更新日期:2017-01-17 00:00:00

  • Stainless steel bipolar plate coated with polyaniline/Zn-Porphyrin composites coatings for proton exchange membrane fuel cell.

    abstract::The proton exchange membrane fuel cells are the promising sustainable energy sources. The present study focuses on the enhancement the fuel cell performance and the protection of the stainless steel bipolar plate from the corrosion using polyaniline/Zn-Porphyrin composites coatings. The electrochemical properties (pol...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-60288-9

    authors: Deyab MA,Mele G

    更新日期:2020-02-24 00:00:00

  • Shaping and Controlled Fragmentation of Liquid Metal Droplets through Cavitation.

    abstract::Targeting micrometer sized metal droplets with near-infrared sub-picosecond laser pulses generates intense stress-confined acoustic waves within the droplet. Spherical focusing amplifies their pressures. The rarefaction wave nucleates cavitation at the center of the droplet, which explosively expands with a repeatable...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-19140-w

    authors: Krivokorytov MS,Zeng Q,Lakatosh BV,Vinokhodov AY,Sidelnikov YV,Kompanets VO,Krivtsun VM,Koshelev KN,Ohl CD,Medvedev VV

    更新日期:2018-01-12 00:00:00

  • Ultrafiltration combined with size exclusion chromatography efficiently isolates extracellular vesicles from cell culture media for compositional and functional studies.

    abstract::Appropriate isolation methods are essential for unravelling the relative contribution of extracellular vesicles (EVs) and the EV-free secretome to homeostasis and disease. We hypothesized that ultrafiltration followed by size exclusion chromatography (UF-SEC) provides well-matched concentrates of EVs and free secreted...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-15717-7

    authors: Benedikter BJ,Bouwman FG,Vajen T,Heinzmann ACA,Grauls G,Mariman EC,Wouters EFM,Savelkoul PH,Lopez-Iglesias C,Koenen RR,Rohde GGU,Stassen FRM

    更新日期:2017-11-10 00:00:00

  • Abnormal Growth and Feeding Behavior Persist After Removal of Upper Airway Obstruction in Juvenile Rats.

    abstract::Pediatric obstructive sleep-disordered breathing is associated with growth retardation, but also with obesity that has a tendency to persist following treatment. We investigated the effect of upper airways obstruction (AO) and of obstruction removal (OR) in juvenile rats on gut-derived ghrelin and related hypothalamic...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-02843-5

    authors: Assadi MH,Shknevsky E,Segev Y,Tarasiuk A

    更新日期:2017-06-02 00:00:00

  • A New Route for High-Purity Organic Materials: High-Pressure-Ramp-Induced Ultrafast Polymerization of 2-(Hydroxyethyl)Methacrylate.

    abstract::The synthesis of highly biocompatible polymers is important for modern biotechnologies and medicine. Here, we report a unique process based on a two-step high-pressure ramp (HPR) for the ultrafast and efficient bulk polymerization of 2-(hydroxyethyl)methacrylate (HEMA) at room temperature without photo- and thermal ac...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep18244

    authors: Evlyukhin E,Museur L,Traore M,Perruchot C,Zerr A,Kanaev A

    更新日期:2015-12-16 00:00:00

  • Photodynamic activation as a molecular switch to promote osteoblast cell differentiation via AP-1 activation.

    abstract::In photodynamic therapy (PDT), cells are impregnated with a photosensitizing agent that is activated by light irradiation, thereby photochemically generating reactive oxygen species (ROS). The amounts of ROS produced depends on the PDT dose and the nature of the photosensitizer. Although high levels of ROS are cytotox...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep13114

    authors: Kushibiki T,Tu Y,Abu-Yousif AO,Hasan T

    更新日期:2015-08-17 00:00:00

  • Gait patterns associated with thyroid function: The Rotterdam Study.

    abstract::Gait is an important health indicator and poor gait is strongly associated with disability and risk of falls. Thyroid dysfunction is suggested as a potential determinant of gait deterioration, but this has not been explored in a population-based study. We therefore investigated the association of thyroid function with...

    journal_title:Scientific reports

    pub_type: 临床试验,杂志文章

    doi:10.1038/srep38912

    authors: Bano A,Chaker L,Darweesh SK,Korevaar TI,Mattace-Raso FU,Dehghan A,Franco OH,van der Geest JN,Ikram MA,Peeters RP

    更新日期:2016-12-14 00:00:00

  • Evaluation of the expression stability of reference genes in Apis mellifera under pyrethroid treatment.

    abstract::Honeybees (Apis mellifera L.), which unquestionably play an economically important role in pollination and agricultural production, are at risk of decline. To study changes in gene expression in insects upon exposure to pesticides or other external stimuli, appropriate reference genes are required for data normalizati...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-73125-w

    authors: Wieczorek P,Frąckowiak P,Obrępalska-Stęplowska A

    更新日期:2020-09-30 00:00:00

  • The role of gel-phase domains in electroporation of vesicles.

    abstract::Transient permeabilisation of the cell membrane is a critical step to introduce drugs or DNA into living cells, yet challenging for both biological research and therapeutic applications. To achieve this, electroporation (or electropermeabilisation) has become a widely used method due to its simplicity to deliver almos...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-23097-9

    authors: Perrier DL,Rems L,Kreutzer MT,Boukany PE

    更新日期:2018-03-19 00:00:00

  • Next-generation sequencing for identification of actionable gene mutations in intestinal-type sinonasal adenocarcinoma.

    abstract::Intestinal-type sinonasal adenocarcinoma (ITAC) is a rare tumor carrying poor prognosis and needing new treatment options. The aim of this study was to identify actionable gene mutations that can guide new personalized target-specific therapies in ITAC patients. A series of 48 tumor and 27 corresponding germline DNA s...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-80242-z

    authors: Sánchez-Fernández P,Riobello C,Costales M,Vivanco B,Cabal VN,García-Marín R,Suárez-Fernández L,López F,Cabanillas R,Hermsen MA,Llorente JL

    更新日期:2021-01-26 00:00:00

  • Association between cognitive quotient test score and hippocampal volume: a novel, rapid application-based screening tool.

    abstract::We aimed to develop a brief, preclinical test to screen the reduced hippocampal volume that is a marker of early dementia [Cognitive Quotient (CQ) test]. We performed an observational study of adult subjects who underwent brain MRI in seven institutions from February 2018 to May 2019. The CQ test consists of five comp...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-74019-7

    authors: Kasai W,Goto T,Aoyama Y,Sato K

    更新日期:2020-10-07 00:00:00

  • Dopaminergic modulation of performance monitoring in Parkinson's disease: An event-related potential study.

    abstract::Monitoring one's actions is essential for goal-directed performance. In the event-related potential (ERP), errors are followed by fronto-centrally distributed negativities. These error(-related) negativity (Ne/ERN) amplitudes are often found to be attenuated in patients with Parkinson's disease (PD) compared to health...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep41222

    authors: Seer C,Lange F,Loens S,Wegner F,Schrader C,Dressler D,Dengler R,Kopp B

    更新日期:2017-01-24 00:00:00

  • Improved drought stress tolerance in Arabidopsis by CRISPR/dCas9 fusion with a Histone AcetylTransferase.

    abstract::Drought episodes decrease plant growth and productivity, which in turn cause high economic losses. Plants naturally sense and respond to water stress by activating specific signalling pathways leading to physiological and developmental adaptations. Genetically engineering genes that belong to these pathways might impr...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-44571-y

    authors: Roca Paixão JF,Gillet FX,Ribeiro TP,Bournaud C,Lourenço-Tessutti IT,Noriega DD,Melo BP,de Almeida-Engler J,Grossi-de-Sa MF

    更新日期:2019-05-30 00:00:00

  • Experimental observation of weak non-Markovianity.

    abstract::Non-Markovianity has recently attracted large interest due to significant advances in its characterization and its exploitation for quantum information processing. However, up to now, only non-Markovian regimes featuring environment to system backflow of information (strong non-Markovianity) have been experimentally s...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep17520

    authors: Bernardes NK,Cuevas A,Orieux A,Monken CH,Mataloni P,Sciarrino F,Santos MF

    更新日期:2015-12-02 00:00:00

  • Genomics of high molecular weight plasmids isolated from an on-farm biopurification system.

    abstract::The use of biopurification systems (BPS) constitutes an efficient strategy to eliminate pesticides from polluted wastewaters from farm activities. BPS environments contain a high microbial density and diversity facilitating the exchange of information among bacteria, mediated by mobile genetic elements (MGEs), which p...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep28284

    authors: Martini MC,Wibberg D,Lozano M,Torres Tejerizo G,Albicoro FJ,Jaenicke S,van Elsas JD,Petroni A,Garcillán-Barcia MP,de la Cruz F,Schlüter A,Pühler A,Pistorio M,Lagares A,Del Papa MF

    更新日期:2016-06-20 00:00:00

  • MBSTAR: multiple instance learning for predicting specific functional binding sites in microRNA targets.

    abstract::MicroRNA (miRNA) regulates gene expression by binding to specific sites in the 3'untranslated regions of its target genes. Machine learning based miRNA target prediction algorithms first extract a set of features from potential binding sites (PBSs) in the mRNA and then train a classifier to distinguish targets from no...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep08004

    authors: Bandyopadhyay S,Ghosh D,Mitra R,Zhao Z

    更新日期:2015-01-23 00:00:00

  • Quantitative metabolic imaging using endogenous fluorescence to detect stem cell differentiation.

    abstract::The non-invasive high-resolution spatial mapping of cell metabolism within tissues could provide substantial advancements in assessing the efficacy of stem cell therapy and understanding tissue development. Here, using two-photon excited fluorescence microscopy, we elucidate the relationships among endogenous cell flu...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep03432

    authors: Quinn KP,Sridharan GV,Hayden RS,Kaplan DL,Lee K,Georgakoudi I

    更新日期:2013-12-05 00:00:00

  • Comprehensive Multi-Dimensional MRI for the Simultaneous Assessment of Cardiopulmonary Anatomy and Physiology.

    abstract::Diagnostic testing often assesses the cardiovascular or respiratory systems in isolation, ignoring the major pathophysiologic interactions between the systems in many diseases. When both systems are assessed currently, multiple modalities are utilized in costly fashion with burdensome logistics and decreased accessibi...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-04676-8

    authors: Cheng JY,Zhang T,Alley MT,Uecker M,Lustig M,Pauly JM,Vasanawala SS

    更新日期:2017-07-13 00:00:00

  • Receptor-interacting serine/threonine kinase 1- and 3-dependent inflammation induced in lungs of chicken infected with Pasteurella multocida.

    abstract::Fowl cholera is a serious, highly contagious disease caused by the bacterium Pasteurella multocida (P. multocida) in a range of avian species and is characterized by an acute form of septicaemia. The pathogenic mechanism of chicken lung injury caused by the bacterium is unclear. Therefore, P. multocida Q (a reference ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-62042-7

    authors: Li W,Tang Q,Dai N,Feng W,Xie C,Cheng G,Liu X,Zhang W,Hu X,Gu C

    更新日期:2020-04-14 00:00:00

  • Cell-death-inducing DFFA-like Effector B Contributes to the Assembly of Hepatitis C Virus (HCV) Particles and Interacts with HCV NS5A.

    abstract::Hepatitis C virus (HCV) uses components of the very-low-density lipoprotein (VLDL) pathway for assembly/release. We previously reported that hepatocyte nuclear factor 4α (HNF4α) participates in HCV assembly/release through downstream factors those participate in VLDL assembly/secretion. Cell-death-inducing DFFA-like e...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep27778

    authors: Cai H,Yao W,Li L,Li X,Hu L,Mai R,Peng T

    更新日期:2016-06-10 00:00:00

  • Degree of functionalisation dependence of individual Raman intensities in covalent graphene derivatives.

    abstract::Covalent functionalisation of graphene is a continuously progressing field of research. The optical properties of such derivatives attract particular attention. In virtually all optical responses, however, an enhancement in peak intensity with increase of sp3 carbon content, and a vanishing of the peak position shift ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep45165

    authors: Vecera P,Eigler S,Koleśnik-Gray M,Krstić V,Vierck A,Maultzsch J,Schäfer RA,Hauke F,Hirsch A

    更新日期:2017-03-27 00:00:00

  • Physiological demands of a swimming-based video game: Influence of gender, swimming background, and exergame experience.

    abstract::Active video games (exergames) may provide short-term increase in energy expenditure. We explored the effects of gender and prior experience on aerobic and anaerobic energy systems contributions, and the activity profiles of 40 participants playing with a swimming exergame. We recorded oxygen consumption and assessed ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-05583-8

    authors: Soltani P,Figueiredo P,Ribeiro J,Fernandes RJ,Vilas-Boas JP

    更新日期:2017-07-12 00:00:00

  • Recombinant antibodies for specific detection of clostridial [Fe-Fe] hydrogenases.

    abstract::Biological hydrogen production is based on activity of specific enzymes called hydrogenases. Hydrogenases are oxygen sensitive metalloenzymes containing Ni and/or Fe atoms at the active site, catalyzing reversible reduction of protons. Generally, [Fe-Fe] hydrogenases prefer proton reduction to molecular hydrogen, a po...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep36034

    authors: Mangayil R,Karp M,Lamminmäki U,Santala V

    更新日期:2016-10-27 00:00:00

  • Evaluation of urinary inflammatory index in rapid screening of urinary tract infection.

    abstract::The objective of this study was to assess the diagnosis value of urinary inflammatory index (UII) and systemic immune-inflammation index (SII) for UTI. Nine inflammatory indexes including neutrophil-to-lymphocyte ratio, platelet-to-lymphocyte ratio, SII and six UIIs were calculated for Receiver operating characteristi...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-76352-3

    authors: Gu W,Huang W,Zhang J,Qian S,Cao H,Ge L

    更新日期:2020-11-09 00:00:00

  • Author Correction: Empagliflozin improves post-infarction cardiac remodeling through GTP enzyme cyclohydrolase 1 and irrespective of diabetes status.

    abstract::An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...

    journal_title:Scientific reports

    pub_type: 已发布勘误

    doi:10.1038/s41598-020-73065-5

    authors: Del Carmen Asensio Lopez M,Lax A,Hernandez Vicente A,Saura Guillen E,Hernandez-Martinez A,Fernandez Del Palacio MJ,Bayes-Genis A,Pascual Figal DA

    更新日期:2020-10-09 00:00:00

  • Quantifying semi-volatile organic contaminants in solution by internal standard addition method requires prompt addition of the internal standards.

    abstract::The precision and accuracy of quantifying semi-volatile organic compounds (SVOCs) in solution by GC/MS, particularly when volume errors are unpredictable or difficult to control, are improved by utilizing internal standards (IS). Not obvious though is the extent to which timing IS addition affects measurement. To illu...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-74688-4

    authors: Otim O,Rocha J Jr

    更新日期:2020-10-19 00:00:00

  • Ancient pathogen DNA in archaeological samples detected with a Microbial Detection Array.

    abstract::Ancient human remains of paleopathological interest typically contain highly degraded DNA in which pathogenic taxa are often minority components, making sequence-based metagenomic characterization costly. Microarrays may hold a potential solution to these challenges, offering a rapid, affordable, and highly informativ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep04245

    authors: Devault AM,McLoughlin K,Jaing C,Gardner S,Porter TM,Enk JM,Thissen J,Allen J,Borucki M,DeWitte SN,Dhody AN,Poinar HN

    更新日期:2014-03-06 00:00:00

  • Concerted cell and in vivo screen for pancreatic ductal adenocarcinoma (PDA) chemotherapeutics.

    abstract::PDA is a major cause of US cancer-related deaths. Oncogenic Kras presents in 90% of human PDAs. Kras mutations occur early in pre-neoplastic lesions but are insufficient to cause PDA. Other contributing factors early in disease progression include chronic pancreatitis, alterations in epigenetic regulators, and tumor s...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-77373-8

    authors: Layeghi-Ghalehsoukhteh S,Pal Choudhuri S,Ocal O,Zolghadri Y,Pashkov V,Niederstrasser H,Posner BA,Kantheti HS,Azevedo-Pouly AC,Huang H,Girard L,MacDonald RJ,Brekken RA,Wilkie TM

    更新日期:2020-11-26 00:00:00