Abstract：
:Crustaceans form the second largest subphylum on Earth, which includes Litopeneaus vannamei (Pacific whiteleg shrimp), one of the most cultured shrimp worldwide. Despite efforts to study the shrimp microbiota, little is known about it from shrimp obtained from the open sea and the role that aquaculture plays in microbiota remodeling. Here, the microbiota from the hepatopancreas and intestine of wild type (wt) and aquacultured whiteleg shrimp and pond sediment from hatcheries were characterized using sequencing of seven hypervariable regions of the 16S rRNA gene. Cultured shrimp with AHPND/EMS disease symptoms were also included. We found that (i) microbiota and their predicted metagenomic functions were different between wt and cultured shrimp; (ii) independent of the shrimp source, the microbiota of the hepatopancreas and intestine was different; (iii) the microbial diversity between the sediment and intestines of cultured shrimp was similar; and (iv) associated to an early development of AHPND/EMS disease, we found changes in the microbiome and the appearance of disease-specific bacteria. Notably, under cultured conditions, we identified bacterial taxa enriched in healthy shrimp, such as Faecalibacterium prausnitzii and Pantoea agglomerans, and communities enriched in diseased shrimp, such as Aeromonas taiwanensis, Simiduia agarivorans and Photobacterium angustum.
journal_name
Sci Repjournal_title
Scientific reportsauthors
Cornejo-Granados F,Lopez-Zavala AA,Gallardo-Becerra L,Mendoza-Vargas A,Sánchez F,Vichido R,Brieba LG,Viana MT,Sotelo-Mundo RR,Ochoa-Leyva Adoi
10.1038/s41598-017-11805-wsubject
Has Abstractpub_date
2017-09-18 00:00:00pages
11783issue
1issn
2045-2322pii
10.1038/s41598-017-11805-wjournal_volume
7pub_type
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