Foreign Plastid Sequences in Plant Mitochondria are Frequently Acquired Via Mitochondrion-to-Mitochondrion Horizontal Transfer.

Abstract:

:Angiosperm mitochondrial genomes (mtDNA) exhibit variable quantities of alien sequences. Many of these sequences are acquired by intracellular gene transfer (IGT) from the plastid. In addition, frequent events of horizontal gene transfer (HGT) between mitochondria of different species also contribute to their expanded genomes. In contrast, alien sequences are rarely found in plastid genomes. Most of the plant-to-plant HGT events involve mitochondrion-to-mitochondrion transfers. Occasionally, foreign sequences in mtDNAs are plastid-derived (MTPT), raising questions about their origin, frequency, and mechanism of transfer. The rising number of complete mtDNAs allowed us to address these questions. We identified 15 new foreign MTPTs, increasing significantly the number of those previously reported. One out of five of the angiosperm species analyzed contained at least one foreign MTPT, suggesting a remarkable frequency of HGT among plants. By analyzing the flanking regions of the foreign MTPTs, we found strong evidence for mt-to-mt transfers in 65% of the cases. We hypothesize that plastid sequences were initially acquired by the native mtDNA via IGT and then transferred to a distantly-related plant via mitochondrial HGT, rather than directly from a foreign plastid to the mitochondrial genome. Finally, we describe three novel putative cases of mitochondrial-derived sequences among angiosperm plastomes.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Gandini CL,Sanchez-Puerta MV

doi

10.1038/srep43402

subject

Has Abstract

pub_date

2017-03-06 00:00:00

pages

43402

issn

2045-2322

pii

srep43402

journal_volume

7

pub_type

杂志文章
  • Diversity of vaginal microbiota increases by the time of labor onset.

    abstract::Vaginal microbiota is an important early source of bacterial colonization for newborns. However, only a few small studies have investigated the composition of vaginal microbiota during labor. In this work, we analyzed vaginal swabs collected at 36 weeks gestation and at the onset of labor from 256 women participating ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-17972-0

    authors: Avershina E,Slangsvold S,Simpson MR,Storrø O,Johnsen R,Øien T,Rudi K

    更新日期:2017-12-14 00:00:00

  • Measurement of Two-Photon Absorption Cross Section of Metal Ions by a Mass Sedimentation Approach.

    abstract::The photo-reduction of metal ions in solution induced by femtosecond laser is an important and novel method for fabricating three-dimensional metal microstructures. However, the nonlinear absorption cross section of metal ions remains unknown because its measurement is difficult. In the present study, a method based o...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep17712

    authors: Ma ZC,Chen QD,Han B,Liu XQ,Song JF,Sun HB

    更新日期:2015-12-11 00:00:00

  • Comparison of Biaxial Biomechanical Properties of Post-menopausal Human Prolapsed and Non-prolapsed Uterosacral Ligament.

    abstract::Uterosacral ligaments (USLs) provide structural support to the female pelvic floor, and a loss of USL structural integrity or biomechanical function may induce pelvic organ prolapse (POP). Alterations in extracellular matrix composition and organization dictate USL mechanical function. Changes in USL microstructure an...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-64192-0

    authors: Danso EK,Schuster JD,Johnson I,Harville EW,Buckner LR,Desrosiers L,Knoepp LR,Miller KS

    更新日期:2020-04-30 00:00:00

  • Bisphenol A in eggs causes development-specific liver molecular reprogramming in two generations of rainbow trout.

    abstract::Bisphenol A (BPA) is widely used in the manufacture of plastics and epoxy resins and is prevalent in the aquatic environment. BPA disrupts endocrine pathways in fish, but the long-term developmental implications are unknown. We demonstrate that BPA deposition in the eggs of rainbow trout (Oncorhynchus mykiss), an ecol...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-13301-7

    authors: Sadoul B,Birceanu O,Aluru N,Thomas JK,Vijayan MM

    更新日期:2017-10-26 00:00:00

  • A biomolecular anthropological investigation of William Adams, the first SAMURAI from England.

    abstract::William Adams (Miura Anjin) was an English navigator who sailed with a Dutch trading fleet to the far East and landed in Japan in 1600. He became a vassal under the Shogun, Tokugawa Ieyasu, was bestowed with a title, lands and swords, and became the first SAMURAI from England. "Miura" comes from the name of the territ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-78723-2

    authors: Mizuno F,Ishiya K,Matsushita M,Matsushita T,Hampson K,Hayashi M,Tokanai F,Kurosaki K,Ueda S

    更新日期:2020-12-10 00:00:00

  • A novel optical thermometry based on the energy transfer from charge transfer band to Eu3+-Dy3+ ions.

    abstract::Optical thermometry based on the up-conversion intensity ratio of thermally coupled levels of rare earth ions has been widely studied to achieve an inaccessible temperature measurement in submicron scale. In this work, a novel optical temperature sensing strategy based on the energy transfer from charge transfer bands...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-06421-7

    authors: Wang J,Bu Y,Wang X,Seo HJ

    更新日期:2017-07-20 00:00:00

  • Rho-kinase/myosin light chain kinase pathway plays a key role in the impairment of bile canaliculi dynamics induced by cholestatic drugs.

    abstract::Intrahepatic cholestasis represents a frequent manifestation of drug-induced liver injury; however, the mechanisms underlying such injuries are poorly understood. In this study of human HepaRG and primary hepatocytes, we found that bile canaliculi (BC) underwent spontaneous contractions, which are essential for bile a...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep24709

    authors: Sharanek A,Burban A,Burbank M,Le Guevel R,Li R,Guillouzo A,Guguen-Guillouzo C

    更新日期:2016-05-12 00:00:00

  • Guided migration analyses at the single-clone level uncover cellular targets of interest in tumor-associated myeloid-derived suppressor cell populations.

    abstract::Myeloid-derived suppressor cells (MDSCs) are immune cells that exert immunosuppression within the tumor, protecting cancer cells from the host's immune system and/or exogenous immunotherapies. While current research has been mostly focused in countering MDSC-driven immunosuppression, little is known about the mechanis...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-57941-8

    authors: Duarte-Sanmiguel S,Shukla V,Benner B,Moore J,Lemmerman L,Lawrence W,Panic A,Wang S,Idzkowski N,Guio-Vega G,Higuita-Castro N,Ghadiali S,Carson WE,Gallego-Perez D

    更新日期:2020-01-27 00:00:00

  • Invariant object recognition is a personalized selection of invariant features in humans, not simply explained by hierarchical feed-forward vision models.

    abstract::One key ability of human brain is invariant object recognition, which refers to rapid and accurate recognition of objects in the presence of variations such as size, rotation and position. Despite decades of research into the topic, it remains unknown how the brain constructs invariant representations of objects. Prov...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-13756-8

    authors: Karimi-Rouzbahani H,Bagheri N,Ebrahimpour R

    更新日期:2017-10-31 00:00:00

  • The Clinical Effect of Arthroscopic Rotator Cuff Repair techniques: A Network Meta-Analysis and Systematic Review.

    abstract::Rotator cuff tears are common and are associated with shoulder pain, disability, and dysfunction. Previous studies that have reported different arthroscopic techniques are controversial. A network meta-analysis with indirect and direct evidence was performed to compare the effectiveness of arthroscopic techniques for ...

    journal_title:Scientific reports

    pub_type: 杂志文章,meta分析

    doi:10.1038/s41598-019-40641-3

    authors: Xu B,Chen L,Zou J,Gu Y,Hao L,Peng K

    更新日期:2019-03-11 00:00:00

  • Resistance Switching and Memristive Hysteresis in Visible-Light-Activated Adsorbed ZnO Thin Films.

    abstract::The discovery of resistance switching memristors marks a paradigm shift in the search for alternative non-volatile memory components in the semiconductor industry. Normally a dielectric in these bistable memory cells changes its resistance with an applied electric field or current, albeit retaining the resistive state...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-20598-5

    authors: Barnes BK,Das KS

    更新日期:2018-02-01 00:00:00

  • Signal mingle: Micropatterns of BMP-2 and fibronectin on soft biopolymeric films regulate myoblast shape and SMAD signaling.

    abstract::In vivo, bone morphogenetic protein 2 (BMP-2) exists both in solution and bound to the extracellular matrix (ECM). While these two modes of presentation are known to influence cell behavior distinctly, their role in the niche microenvironment and their functional relevance in the genesis of a biological response has s...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep41479

    authors: Fitzpatrick V,Fourel L,Destaing O,Gilde F,Albigès-Rizo C,Picart C,Boudou T

    更新日期:2017-01-30 00:00:00

  • Spin-helix Larmor mode.

    abstract::A two-dimensional electron gas (2DEG) with equal-strength Rashba and Dresselhaus spin-orbit coupling sustains persistent helical spin-wave states, which have remarkably long lifetimes. In the presence of an in-plane magnetic field, there exist single-particle excitations that have the character of propagating helical ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-21818-8

    authors: Karimi S,Ullrich CA,D'Amico I,Perez F

    更新日期:2018-02-22 00:00:00

  • Applications of chitosan (CHI)-reduced graphene oxide (rGO)-polyaniline (PAni) conducting composite electrode for energy generation in glucose biofuel cell.

    abstract::A glassy carbon electrode (GC) immobilized with chitosan (CHI)@reduced graphene (rGO)-polyaniline (PAni)/ferritin (Frt)/glucose oxidase (GOx) bioelectrode was prepared. The prepared electrode was characterized by using cyclic voltammetry (CV), linear sweep voltammetry (LSV) and electrochemical impedance spectroscopy (...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-67253-6

    authors: Haque SU,Nasar A,Inamuddin,Rahman MM

    更新日期:2020-06-26 00:00:00

  • Risk factor analysis and idiographic features of mandibular coronoid fractures: A retrospective case-control study.

    abstract::This study aimed to identify and distinguish various factors that may influence the occurrence of mandibular coronoid fractures. From January 2000 to December 2009, a total of 1131 patients with maxillofacial fractures were enrolled in this statistical study to evaluate the association between mandibular coronoid frac...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-02335-6

    authors: Zhou HH,Lv K,Yang RT,Li Z,Li ZB

    更新日期:2017-05-19 00:00:00

  • Homogeneity evaluation of mesenchymal stem cells based on electrotaxis analysis.

    abstract::Stem cell therapy that can restore function to damaged tissue, avoid host rejection and reduce inflammation throughout body without use of immunosuppressive drugs. The established methods were used to identify and to isolate specific stem cell markers by FACS or by immunomagnetic cell separation. The procedures for di...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-09543-0

    authors: Kim MS,Lee MH,Kwon BJ,Kim D,Koo MA,Seon GM,Park JC

    更新日期:2017-08-29 00:00:00

  • Transcriptome responses of Streptococcus mutans to peroxide stress: identification of novel antioxidant pathways regulated by Spx.

    abstract::The oxidative stress regulator Spx is ubiquitously found among Gram-positive bacteria. Previously, we reported identification of two Spx proteins in Streptococcus mutans - SpxA1 was the primary activator of oxidative stress genes whereas SpxA2 served a backup role. Here, we used RNA sequencing to uncover the scope of ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-16367-5

    authors: Kajfasz JK,Ganguly T,Hardin EL,Abranches J,Lemos JA

    更新日期:2017-11-22 00:00:00

  • Enhancing coevolution-based contact prediction by imposing structural self-consistency of the contacts.

    abstract::Based on the development of new algorithms and growth of sequence databases, it has recently become possible to build robust higher-order sequence models based on sets of aligned protein sequences. Such models have proven useful in de novo structure prediction, where the sequence models are used to find pairs of resid...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-29357-y

    authors: Kassem MM,Christoffersen LB,Cavalli A,Lindorff-Larsen K

    更新日期:2018-07-24 00:00:00

  • Increased future occurrences of the exceptional 2018-2019 Central European drought under global warming.

    abstract::Since the spring 2018, a large part of Europe has been in the midst of a record-setting drought. Using long-term observations, we demonstrate that the occurrence of the 2018-2019 (consecutive) summer drought is unprecedented in the last 250 years, and its combined impact on the growing season vegetation activities is ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-68872-9

    authors: Hari V,Rakovec O,Markonis Y,Hanel M,Kumar R

    更新日期:2020-08-06 00:00:00

  • RNA-Seq-based transcriptome analysis of methicillin-resistant Staphylococcus aureus biofilm inhibition by ursolic acid and resveratrol.

    abstract::Bacterial biofilms are particularly problematic since they become resistant to most available antibiotics. Hence, novel potential antagonists to inhibit biofilm formation are urgent. Here the influences of two natural products, ursolic acid and resveratrol, on biofilm of the clinical methicillin-resistant Staphylococc...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep05467

    authors: Qin N,Tan X,Jiao Y,Liu L,Zhao W,Yang S,Jia A

    更新日期:2014-06-27 00:00:00

  • Skyrmionium - high velocity without the skyrmion Hall effect.

    abstract::The lateral motion of a magnetic skyrmion, arising because of the skyrmion Hall effect, imposes a number of restrictions on the use of this spin state in the racetrack memory. A skyrmionium is a more promising spin texture for memory applications, since it has zero total topological charge and propagates strictly alon...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-34934-2

    authors: Kolesnikov AG,Stebliy ME,Samardak AS,Ognev AV

    更新日期:2018-11-16 00:00:00

  • The estrogenicity of methylparaben and ethylparaben at doses close to the acceptable daily intake in immature Sprague-Dawley rats.

    abstract::The estrogenicity of parabens at human exposure levels has become a focus of concern due to the debate over whether the estrogenicity of parabens is strong enough to play a role in the increased incidence of breast cancer. In this study, the uterotrophic activities of methylparaben (MP) and ethylparaben (EP) at doses ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep25173

    authors: Sun L,Yu T,Guo J,Zhang Z,Hu Y,Xiao X,Sun Y,Xiao H,Li J,Zhu D,Sai L,Li J

    更新日期:2016-04-28 00:00:00

  • Simple size-controlled synthesis of Au nanoparticles and their size-dependent catalytic activity.

    abstract::The controlled preparation of Au nanoparticles (NPs) in the size range of 6 to 22 nm is explored in this study. The Au NPs were prepared by the reduction of tetrachloroauric acid using maltose in the presence of nonionic surfactant Tween 80 at various concentrations to control the size of the resulting Au NPs. With in...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-22976-5

    authors: Suchomel P,Kvitek L,Prucek R,Panacek A,Halder A,Vajda S,Zboril R

    更新日期:2018-03-15 00:00:00

  • Plasmonically enhanced metal-insulator multistacked photodetectors with separate absorption and collection junctions for near-infrared applications.

    abstract::Plasmonically enhanced metal-insulator-metal (MIM) type structures are popular among perfect absorbers and photodetectors in which the field enhancement (for increased absorption) mechanism is directly coupled with collection (photocurrent) processes. In this work we propose a device structure that decouples absorptio...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep42349

    authors: Abedini Dereshgi S,Sisman Z,Topalli K,Okyay AK

    更新日期:2017-02-09 00:00:00

  • Influence of different aluminum salts on the photocatalytic properties of Al doped TiO2 nanoparticles towards the degradation of AO7 dye.

    abstract::Three kinds of Al-TiO2 samples and pure TiO2 samples were synthesized via a modified polyacrylamide gel route using different aluminum salts, including Al2(SO4)3∙18H2O, AlCl3, and Al(NO3)3∙9H2O under identical conditions. The influence of different aluminum salts on the phase purity, morphologies, thermal stability of...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-08216-2

    authors: Luo JL,Wang SF,Liu W,Tian CX,Wu JW,Zu XT,Zhou WL,Yuan XD,Xiang X

    更新日期:2017-08-14 00:00:00

  • Active dynamics of colloidal particles in time-varying laser speckle patterns.

    abstract::Colloidal particles immersed in a dynamic speckle pattern experience an optical force that fluctuates both in space and time. The resulting dynamics presents many interesting analogies with a broad class of non-equilibrium systems like: active colloids, self propelled microorganisms, transport in dynamical intracellul...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep27681

    authors: Bianchi S,Pruner R,Vizsnyiczai G,Maggi C,Di Leonardo R

    更新日期:2016-06-09 00:00:00

  • Significant Role of Collagen XVII And Integrin β4 in Migration and Invasion of The Less Aggressive Squamous Cell Carcinoma Cells.

    abstract::Collagen XVII and integrin α6β4 have well-established roles as epithelial adhesion molecules. Their binding partner laminin 332 as well as integrin α6β4 are largely recognized to promote invasion and metastasis in various cancers, and collagen XVII is essential for the survival of colon and lung cancer stem cells. We ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep45057

    authors: Moilanen JM,Löffek S,Kokkonen N,Salo S,Väyrynen JP,Hurskainen T,Manninen A,Riihilä P,Heljasvaara R,Franzke CW,Kähäri VM,Salo T,Mäkinen MJ,Tasanen K

    更新日期:2017-03-22 00:00:00

  • Molecular cloning, expression and the adjuvant effects of interleukin-8 of channel catfish (Ictalurus Punctatus) against Streptococcus iniae.

    abstract::Interleukin-8 (IL-8) as an important cytokine involving in inflammatory and immune response, has been studied as effective adjuvants for vaccines in mammals. However, there are fewer reports about the characterization and adjuvant effects of IL-8 in fish. In this study, cloning and sequence analysis of IL-8 coding reg...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep29310

    authors: Wang E,Wang J,Long B,Wang K,He Y,Yang Q,Chen D,Geng Y,Huang X,Ouyang P,Lai W

    更新日期:2016-07-04 00:00:00

  • Administration of Lactobacillus salivarius LI01 or Pediococcus pentosaceus LI05 prevents CCl4-induced liver cirrhosis by protecting the intestinal barrier in rats.

    abstract::Alterations in the gut microbiome have been reported in liver cirrhosis, and probiotic interventions are considered a potential treatment strategy. This study aimed to evaluate the effects and mechanisms of Lactobacillus salivarius LI01, Pediococcus pentosaceus LI05, Lactobacillus rhamnosus GG, Clostridium butyricum M...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-07091-1

    authors: Shi D,Lv L,Fang D,Wu W,Hu C,Xu L,Chen Y,Guo J,Hu X,Li A,Guo F,Ye J,Li Y,Andayani D,Li L

    更新日期:2017-07-31 00:00:00

  • Fewer clouds in the Mediterranean: consistency of observations and climate simulations.

    abstract::Clouds play a major role in the climate system, but large uncertainties remain about their decadal variations. Here we report a widespread decrease in cloud cover since the 1970 s over the Mediterranean region, in particular during the 1970 s-1980 s, especially in the central and eastern areas and during springtime. C...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep41475

    authors: Sanchez-Lorenzo A,Enriquez-Alonso A,Calbó J,González JA,Wild M,Folini D,Norris JR,Vicente-Serrano SM

    更新日期:2017-02-02 00:00:00