Comparative analysis of common regions found in babuviruses and alphasatellite molecules.

Abstract:

:Viruses in the genus Babuvirus have multi-component ssDNA genomes and often associate with alphasatellite molecules containing two common motifs, a common-region stem-loop (CR-SL) involved in initiation of rolling-circle replication and a common-region major (CR-M) motif involved in secondary-strand synthesis. We compared known babuvirus genome components and alphasatellite CR-SL and CR-M sequences, defining five divergent CR-SL sequence classes. We identified iterated sequence elements in babuvirus genome components that have particularly conserved sequences and spatial arrangements between known babuviruses.

journal_name

Arch Virol

journal_title

Archives of virology

authors

Stainton D,Martin DP,Collings DA,Varsani A

doi

10.1007/s00705-016-3168-1

subject

Has Abstract

pub_date

2017-03-01 00:00:00

pages

849-855

issue

3

eissn

0304-8608

issn

1432-8798

pii

10.1007/s00705-016-3168-1

journal_volume

162

pub_type

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