Rapid measurement of molecular transport and interaction inside living cells using single plane illumination.

Abstract:

:The ability to measure biomolecular dynamics within cells and tissues is very important to understand fundamental physiological processes including cell adhesion, signalling, movement, division or metabolism. Usually, such information is obtained using particle tracking methods or single point fluctuation spectroscopy. We show that image mean square displacement analysis, applied to single plane illumination microscopy data, is a faster and more efficient way of unravelling rapid, three-dimensional molecular transport and interaction within living cells. From a stack of camera images recorded in seconds, the type of dynamics such as free diffusion, flow or binding can be identified and quantified without being limited by current camera frame rates. Also, light exposure levels are very low and the image mean square displacement method does not require calibration of the microscope point spread function. To demonstrate the advantages of our approach, we quantified the dynamics of several different proteins in the cyto- and nucleoplasm of living cells. For example, from a single measurement, we were able to determine the diffusion coefficient of free clathrin molecules as well as the transport velocity of clathrin-coated vesicles involved in endocytosis. Used in conjunction with dual view detection, we further show how protein-protein interactions can be quantified.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Hedde PN,Stakic M,Gratton E

doi

10.1038/srep07048

subject

Has Abstract

pub_date

2014-11-14 00:00:00

pages

7048

issn

2045-2322

pii

srep07048

journal_volume

4

pub_type

杂志文章
  • The effect of thermal treatment on ac/dc conductivity and current fluctuations of PVDF/NMP/[EMIM][TFSI] solid polymer electrolyte.

    abstract::The experimental study deals with the investigation of the effect of diverse crystallinity of imidazolium ionic-liquid-based SPE on conductivity and current fluctuations. The experimental study was carried out on samples consisting of [EMIM][TFSI] as ionic liquid, PVDF as a polymer matrix and NMP as a solvent. After t...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-78363-6

    authors: Sedlak P,Gajdos A,Macku R,Majzner J,Holcman V,Sedlakova V,Kubersky P

    更新日期:2020-12-03 00:00:00

  • Nonerythropoietic Erythropoietin-Derived Peptide Suppresses Adipogenesis, Inflammation, Obesity and Insulin Resistance.

    abstract::Erythropoietin (EPO) has been identified as being crucial for obesity modulation; however, its erythropoietic activity may limit its clinical application. EPO-derived Helix B-surface peptide (pHBSP) is nonerythrogenic but has been reported to retain other functions of EPO. The current study aimed to evaluate the effec...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep15134

    authors: Liu Y,Luo B,Shi R,Wang J,Liu Z,Liu W,Wang S,Zhang Z

    更新日期:2015-10-13 00:00:00

  • Expandable Mg-based Helical Stent Assessment using Static, Dynamic, and Porcine Ex Vivo Models.

    abstract::A bioresorbable metallic helical stent was explored as a new device opportunity (magnesium scaffold), which can be absorbed by the body without leaving a trace and simultaneously allowing restoration of vasoreactivity with the potential for vessel remodeling. In this study, developed Mg-based helical stent was inserte...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-01214-4

    authors: Koo Y,Tiasha T,Shanov VN,Yun Y

    更新日期:2017-04-26 00:00:00

  • A new decomposition mechanism for metal complexes under water-oxidation conditions.

    abstract::Herein, water-oxidation reaction by cobalt(II) phthalocyanine, N,N'-bis (salicylidene) ethylenediamino cobalt(II), nickel(II) Schiff base (N,N'-bis (salicylidene)ethylenediamino nickel(II), nickel(II)) phthalocyanine-tetrasulfonate tetrasodium, manganese(II) phthalocyanine, 5,10,15,20-Tetraphenyl-21H,23H-porphine mang...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-43953-6

    authors: Najafpour MM,Feizi H

    更新日期:2019-05-16 00:00:00

  • Long-term memory guides resource allocation in working memory.

    abstract::Working memory capacity is incredibly limited and thus it is important to use this resource wisely. Prior knowledge in long-term memory can aid in efficient encoding of information by allowing for the prioritization of novel stimuli over familiar ones. Here we used a full-report procedure in a visual working memory pa...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-79108-1

    authors: Bruning AL,Lewis-Peacock JA

    更新日期:2020-12-17 00:00:00

  • Metacognitive Therapy versus Cognitive Behaviour Therapy in Adults with Major Depression: A Parallel Single-Blind Randomised Trial.

    abstract::In the last forty years therapy outcomes for depression have remained the same with approximately 50% of patients responding to treatments. Advances are urgently required. We hypothesised that a recent treatment, metacognitive therapy (MCT), might be more effective, by targeting mental control processes that directly ...

    journal_title:Scientific reports

    pub_type: 杂志文章,随机对照试验

    doi:10.1038/s41598-020-64577-1

    authors: Callesen P,Reeves D,Heal C,Wells A

    更新日期:2020-05-12 00:00:00

  • Assessment of pharmacokinetic compatibility of short acting CDRI candidate trioxane derivative, 99-411, with long acting prescription antimalarials, lumefantrine and piperaquine.

    abstract::The pharmacokinetic compatibility of short-acting CDRI candidate antimalarial trioxane derivative, 99-411, was tested with long-acting prescription antimalarials, lumefantrine and piperaquine. LC-ESI-MS/MS methods were validated for simultaneous bioanalysis of lumefantrine and 99-411 and of piperaquine and 99-411 comb...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep17264

    authors: Taneja I,Raju KS,Singh SP,Wahajuddin M

    更新日期:2015-11-25 00:00:00

  • High Performance Graphene Nano-ribbon Thermoelectric Devices by Incorporation and Dimensional Tuning of Nanopores.

    abstract::Thermoelectric properties of Graphene nano-ribbons (GNRs) with nanopores (NPs) are explored for a range of pore dimensions in order to achieve a high performance two-dimensional nano-scale thermoelectric device. We reduce thermal conductivity of GNRs by introducing pores in them in order to enhance their thermoelectri...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep11297

    authors: Hossain MS,Al-Dirini F,Hossain FM,Skafidas E

    更新日期:2015-06-17 00:00:00

  • Cerebral blood flow predicts differential neurotransmitter activity.

    abstract::Application of metabolic magnetic resonance imaging measures such as cerebral blood flow in translational medicine is limited by the unknown link of observed alterations to specific neurophysiological processes. In particular, the sensitivity of cerebral blood flow to activity changes in specific neurotransmitter syst...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-22444-0

    authors: Dukart J,Holiga Š,Chatham C,Hawkins P,Forsyth A,McMillan R,Myers J,Lingford-Hughes AR,Nutt DJ,Merlo-Pich E,Risterucci C,Boak L,Umbricht D,Schobel S,Liu T,Mehta MA,Zelaya FO,Williams SC,Brown G,Paulus M,Honey GD,

    更新日期:2018-03-06 00:00:00

  • Air-like plasmonics with ultralow-refractive-index silica aerogels.

    abstract::The coupling of the surface plasmon near-field into the sensing medium is key to the sensitivity of surface plasmon-based sensing devices. A low-index dielectric is necessary for the sensing medium to support a highly-penetrating surface plasmon evanescent field that extends well into the dielectric medium. The air-li...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-38859-2

    authors: Kim Y,Baek S,Gupta P,Kim C,Chang K,Ryu SP,Kang H,Kim WS,Myoung J,Park W,Kim K

    更新日期:2019-02-19 00:00:00

  • Effect of aqueous and ambient atmospheric environments on plasmon-driven selective reduction reactions.

    abstract::We successfully realised plasmon-driven selective reduction reactions of 2-amino-5-nitrobenzenethiol (2A-5-NBT) to 3,3'-dimercapto-4,4'-diaminoazobenzene , an azobenzene derivative, using surface-enhanced Raman scattering (SERS) spectroscopy, and supported by the theoretical calculations. The SERS spectra demonstrated...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep10269

    authors: Ding Q,Chen M,Li Y,Sun M

    更新日期:2015-06-01 00:00:00

  • Development of a comprehensive set of tools for genome engineering in a cold- and thermo-tolerant Kluyveromyces marxianus yeast strain.

    abstract::Kluyveromyces marxianus, a non-conventional thermotolerant yeast, is potentially useful for production of ethanol and other products. This species has a strong tendency to randomly integrate transforming DNA fragments, making necessary the development of more precise methods for gene targeting. In this study, we first...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-08356-5

    authors: Nambu-Nishida Y,Nishida K,Hasunuma T,Kondo A

    更新日期:2017-08-21 00:00:00

  • Near-infrared roll-off-free electroluminescence from highly stable diketopyrrolopyrrole light emitting diodes.

    abstract::Organic light emitting diodes (OLEDs) operating in the near-infrared spectral region are gaining growing relevance for emerging photonic technologies, such as lab-on-chip platforms for medical diagnostics, flexible self-medicated pads for photodynamic therapy, night vision and plastic-based telecommunications. The ach...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep34096

    authors: Sassi M,Buccheri N,Rooney M,Botta C,Bruni F,Giovanella U,Brovelli S,Beverina L

    更新日期:2016-09-28 00:00:00

  • Complex patterns arise through spontaneous symmetry breaking in dense homogeneous networks of neural oscillators.

    abstract::There has been much interest in understanding collective dynamics in networks of brain regions due to their role in behavior and cognitive function. Here we show that a simple, homogeneous system of densely connected oscillators, representing the aggregate activity of local brain regions, can exhibit a rich variety of...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep22074

    authors: Singh R,Menon SN,Sinha S

    更新日期:2016-02-26 00:00:00

  • Room temperature triplet state spectroscopy of organic semiconductors.

    abstract::Organic light-emitting devices and solar cells are devices that create, manipulate, and convert excited states in organic semiconductors. It is crucial to characterize these excited states, or excitons, to optimize device performance in applications like displays and solar energy harvesting. This is complicated if the...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep03797

    authors: Reineke S,Baldo MA

    更新日期:2014-01-21 00:00:00

  • Establishment and phenotyping of disease model cells created by cell-resealing technique.

    abstract::Cell-based assays are growing in importance for screening drugs and investigating their mechanisms of action. Most of the assays use so-called "normal" cell strain because it is difficult to produce cell lines in which the disease conditions are reproduced. In this study, we used a cell-resealing technique, which reve...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-15443-0

    authors: Kano F,Noguchi Y,Murata M

    更新日期:2017-11-09 00:00:00

  • Response of Human Osteoblast to n-HA/PEEK--Quantitative Proteomic Study of Bio-effects of Nano-Hydroxyapatite Composite.

    abstract::Nano-sized hydroxyapatite (n-HA) is considered as a bio-active material, which is often mixed into bone implant material, polyetheretherketone (PEEK). To reveal the global protein expression modulations of osteoblast in response to direct contact with the PEEK composite containing high level (40%) nano-sized hydroxyap...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep22832

    authors: Zhao M,Li H,Liu X,Wei J,Ji J,Yang S,Hu Z,Wei S

    更新日期:2016-03-09 00:00:00

  • Evidence of a two-dimensional glass transition in graphene: Insights from molecular simulations.

    abstract::Liquids exhibit a sudden increase in viscosity when cooled fast enough, avoiding thermodynamically predicted route of crystallization. This phenomenon, known as glass transition, leads to the formation of non-periodic structures known as glasses. Extensive studies have been conducted on model materials to understand g...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-41231-z

    authors: Ravinder R,Kumar R,Agarwal M,Krishnan NMA

    更新日期:2019-03-14 00:00:00

  • Differential Inhibition of Human and Trypanosome Ubiquitin E1S by TAK-243 Offers Possibilities for Parasite Selective Inhibitors.

    abstract::Novel strategies to target Trypanosoma brucei, Trypanosoma cruzi and Leishmania are urgently needed to generate better and safer drugs against Human African Trypanosomiasis, Chagas disease and Leishmaniasis, respectively. Here, we investigated the feasibility of selectively targeting in trypanosomatids the ubiquitin E...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-52618-3

    authors: Boer DR,Bijlmakers MJ

    更新日期:2019-11-07 00:00:00

  • In situ imaging of microstructure formation in electronic interconnections.

    abstract::The development of microstructure during melting, reactive wetting and solidification of solder pastes on Cu-plated printed circuit boards has been studied by synchrotron radiography. Using Sn-3.0Ag-0.5Cu/Cu and Sn-0.7Cu/Cu as examples, we show that the interfacial Cu6Sn5 layer is present within 0.05 s of wetting, and...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep40010

    authors: Salleh MA,Gourlay CM,Xian JW,Belyakov SA,Yasuda H,McDonald SD,Nogita K

    更新日期:2017-01-12 00:00:00

  • Irisin levels in genetic and essential obesity: clues for a potential dual role.

    abstract::Irisin is conventionally regarded as a myokine involved in the browning of white adipose tissue, energy expenditure and glucose tolerance. Its potential link to fat accumulation and metabolic dysfunction is debated. We sought to explore the relationship between circulating irisin and components of body composition in ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-57855-5

    authors: Mai S,Grugni G,Mele C,Vietti R,Vigna L,Sartorio A,Aimaretti G,Scacchi M,Marzullo P

    更新日期:2020-01-23 00:00:00

  • Strain-induced violation of temperature uniformity in mesoscale liquids.

    abstract::Thermo-elasticity couples the deformation of an elastic (solid) body to its temperature and vice-versa. It is a solid-like property. Highlighting such property in liquids is a paradigm shift: it requires long-range collective interactions that are not considered in current liquid descriptions. The present microthermal...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-69404-1

    authors: Kume E,Baroni P,Noirez L

    更新日期:2020-08-07 00:00:00

  • Sex-specific association of rs4746172 of VCL gene with hypertension in two Han populations from Southern China.

    abstract::Hypertension is the most common and lethal risk factor for cardiovascular disease (CVD). Numerous variants have been associated with hypertension, however, most of which failed to get replication due to ethnic differences. In this study, we analyzed associations of 10 newly reported single nucleotide polymorphisms (SN...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep15245

    authors: Yu Q,Sun HP,Chen WQ,Chen XQ,Xu Y,He YH,Kong QP

    更新日期:2015-10-21 00:00:00

  • Valproic acid inhibits interferon-γ production by NK cells and increases susceptibility to Listeria monocytogenes infection.

    abstract::Valproic acid (VPA) is a drug commonly used for epileptic seizure control. Recently, it has been shown that VPA alters the activation of several immune cells, including Natural Killer (NK) cells, which play an important role in the containment of viruses and intracellular bacteria. Although VPA can increase susceptibi...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-74836-w

    authors: Soria-Castro R,Chávez-Blanco AD,García-Pérez BE,Wong-Baeza I,Flores-Mejía R,Flores-Borja F,Estrada-Parra S,Estrada-García I,Serafín-López J,Chacón-Salinas R

    更新日期:2020-10-20 00:00:00

  • Casimir switch: steering optical transparency with vacuum forces.

    abstract::The Casimir force, originating from vacuum zero-point energy, is one of the most intriguing purely quantum effects. It has attracted renewed interests in current field of nanomechanics, due to the rapid size decrease of on-chip devices. Here we study the optomechanically-induced transparency (OMIT) with a tunable Casi...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep27102

    authors: Liu XF,Li Y,Jing H

    更新日期:2016-06-03 00:00:00

  • Scalable long read self-correction and assembly polishing with multiple sequence alignment.

    abstract::Third-generation sequencing technologies allow to sequence long reads of tens of kbp, that are expected to solve various problems. However, they display high error rates, currently capped around 10%. Self-correction is thus regularly used in long reads analysis projects. We introduce CONSENT, a new self-correction met...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-80757-5

    authors: Morisse P,Marchet C,Limasset A,Lecroq T,Lefebvre A

    更新日期:2021-01-12 00:00:00

  • Structure and nucleic acid binding properties of KOW domains 4 and 6-7 of human transcription elongation factor DSIF.

    abstract::The human transcription elongation factor DSIF is highly conserved throughout all kingdoms of life and plays multiple roles during transcription. DSIF is a heterodimer, consisting of Spt4 and Spt5 that interacts with RNA polymerase II (RNAP II). DSIF binds to the elongation complex and induces promoter-proximal pausin...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-30042-3

    authors: Zuber PK,Hahn L,Reinl A,Schweimer K,Knauer SH,Gottesman ME,Rösch P,Wöhrl BM

    更新日期:2018-08-03 00:00:00

  • Vagus Nerve Stimulation Improves Cardiac Function by Preventing Mitochondrial Dysfunction in Obese-Insulin Resistant Rats.

    abstract::Long-term high-fat diet (HFD) consumption leads to not only obese-insulin resistance, but also impaired left ventricular (LV) function. Vagus nerve stimulation (VNS) has been shown to exert cardioprotection. However, its effects on the heart and metabolic parameters under obese-insulin resistant condition is not known...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep19749

    authors: Samniang B,Shinlapawittayatorn K,Chunchai T,Pongkan W,Kumfu S,Chattipakorn SC,KenKnight BH,Chattipakorn N

    更新日期:2016-02-01 00:00:00

  • Assessing effects from four years of industry-led badger culling in England on the incidence of bovine tuberculosis in cattle, 2013-2017.

    abstract::The objective was to measure the association between badger culling and bovine tuberculosis (TB) incidents in cattle herds in three areas of England between 2013-2017 (Gloucestershire and Somerset) and 2015-2017 (Dorset). Farming industry-selected licensed culling areas were matched to comparison areas. A TB incident ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-49957-6

    authors: Downs SH,Prosser A,Ashton A,Ashfield S,Brunton LA,Brouwer A,Upton P,Robertson A,Donnelly CA,Parry JE

    更新日期:2019-10-11 00:00:00

  • Distribution and clinical associations of integrating conjugative elements and cag pathogenicity islands of Helicobacter pylori in Indonesia.

    abstract::The clinical associations and correlations with other virulence factors such as cag pathogenicity island (PAI) of the Integrating Conjugative Elements Helicobacter pylori TFSS (ICEHptfs), a new type IV secretion system (TFSS) in H. pylori has not been described. Among 103 studied strains from Indonesia, almost all str...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-24406-y

    authors: Waskito LA,Miftahussurur M,Lusida MI,Syam AF,Suzuki R,Subsomwong P,Uchida T,Hamdan M,Nasronudin,Yamaoka Y

    更新日期:2018-04-17 00:00:00