Characterization of a new endo-type polyM-specific alginate lyase from Pseudomonas sp.

Abstract:

:An alginate lyase gene, algA, encoding a new poly β-D-mannuronate (polyM)-specific alginate lyase AlgA, was cloned from Pseudomonas sp. E03. The recombinant AlgA with (His)6-tag, consisting of 364 amino acids (40.4 kDa),was purified using Ni-NTA Sepharose. The purified lyase had maximal activity (222 EU/mg) at pH 8 and 30 °C and also maintained activity between pH 7-9 and below 45 °C. It exclusively and endolytically depolymerized polyM by β-elimination into oligosaccharides with degrees of polymerization (DP) of 2-5. Due to its high substrate specificity, AlgA could be a valuable tool for production of polyM oligosaccharides with low DP and for determining the fine structure of alginate.

journal_name

Biotechnol Lett

journal_title

Biotechnology letters

authors

Zhu BW,Huang LS,Tan HD,Qin YQ,Du YG,Yin H

doi

10.1007/s10529-014-1685-0

subject

Has Abstract

pub_date

2015-02-01 00:00:00

pages

409-15

issue

2

eissn

0141-5492

issn

1573-6776

journal_volume

37

pub_type

杂志文章
  • Co-expression of chimeric chitinase and a polygalacturonase-inhibiting protein in transgenic canola (Brassica napus) confers enhanced resistance to Sclerotinia sclerotiorum.

    abstract:OBJECTIVES:Sclerotinia stem rot (SSR) caused by Sclerotinia sclerotiorum is one of the major fungal diseases of canola. To develop resistance against this fungal disease, the chit42 from Trichoderma atroviride with chitin-binding domain and polygalacturonase-inhibiting protein 2 (PG1P2) of Phaseolus vulgaris were co-ex...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-016-2058-7

    authors: Ziaei M,Motallebi M,Zamani MR,Panjeh NZ

    更新日期:2016-06-01 00:00:00

  • lip2, a novel lipase gene cloned from Aspergillus niger exhibits enzymatic characteristics distinct from its previously identified family member.

    abstract::We have cloned a novel lipase gene, lip2, from Aspergillus niger and expressed it in Escherichia coli. Upon purification of the recombinant Lip2 protein, its properties were characterized. In comparison with a previously identified lipase Lip1, both enzymes are acid lipases (optimal pH <6.5), Ca(2+)-dependent and PMSF...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-010-0238-4

    authors: Yang J,Sun J,Yan Y

    更新日期:2010-07-01 00:00:00

  • Degradation of lignin-containing materials by xylanase in biopreparation of cotton.

    abstract::Solubilization of lignin and carbohydrates from the lignin-holocellulose structure of cotton seed-coat fragments was investigated by UV/VIS spectrometry. Xylanase (Pulpzyme HC) pre-treatment partially destroyed the lignocellulosic structure of the seed-coat fragments, producing reducing sugars and soluble lignin in th...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-006-9042-6

    authors: Csiszár E,Losonczi A,Koczka B,Szakács G,Pomlényi A

    更新日期:2006-05-01 00:00:00

  • Residue Val237 is critical for the enantioselectivity of Penicillium expansum lipase.

    abstract::The shape of the hydrophobic tunnel leading to the active site of Penicillium expansum lipase (PEL) was redesigned by single-point mutations, in order to better understand enzyme enantioselectivity towards naproxen. A variant with a valine-to-glycine substitution at residue 237 exhibited almost no enantioselectivity (...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-013-1405-1

    authors: Tang L,Su M,Chi L,Zhang J,Zhang H,Zhu L

    更新日期:2014-03-01 00:00:00

  • Over-expression of the gene (bglBC1) from Bacillus circulans encoding an endo-beta-(1-->3),(1-->4)-glucanase useful for the preparation of oligosaccharides from barley beta-glucan.

    abstract::An endo-beta-(1-->3),(1-->4)-glucanase gene (bglBC1) from Bacillus circulans ATCC21367 was modified by substituting its native promoter with a strong promoter, BJ27X, to increase expression of the gene when cloned into B. subtilis RM125 and B. megaterium ATCC14945. A 771-bp endo-beta-(1-->3),(1-->4)-glucanase open rea...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-004-4581-1

    authors: Kim KH,Kim YO,Ko BS,Youn HJ,Lee DS

    更新日期:2004-11-01 00:00:00

  • Regioselective synthesis of 1,3,5-adamantanetriol from 1,3-adamantanediol using Kitasatospora cells.

    abstract::Washed cells (62 mg) of Kitasatospora sp. GF12 in 4 ml buffer (pH 7) catalyzed the regioselective hydroxylation of 60 mM 1,3-adamantanediol [1,3-ad(OH)(2)] to 30.9 mM 1,3,5-adamantanetriol [1,3,5-ad(OH)(3)] over 120 h at 24 °C. Glycerol at 400 mM was added to the reaction mixture to recycle the intracellular NADH/NADP...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-012-0960-1

    authors: Mitsukura K,Yamanaka N,Yoshida T,Nagasawa T

    更新日期:2012-09-01 00:00:00

  • Functional characterization of a novel aspartic acid rich lipase, TALipC, from Trichosporon asahii MSR54: solvent-dependent enantio inversion during esterification of 1-phenylethanol.

    abstract::A novel lipase gene TAlipC was isolated from Trichosporon asahii MSR54 and functionally expressed in Pichia pastoris. The protein was His-tagged and purified to homogeneity by affinity chromatography. Sequence comparison revealed a high homology with lipases from Cryptococcus sp. It had a GX type oxyanion hole and a G...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-014-1648-5

    authors: Kumari A,Gupta R

    更新日期:2015-01-01 00:00:00

  • A new immunosensing method by galactose oxidase-mediated electrocatalysis using a virtual beaker array.

    abstract::We report a novel and convenient method for the determination of glycoproteins, especially antibodies, using galactose oxidase (GAO) on the basis of the contents of galactosyl and N-acetylgalactosaminyl residues in carbohydrate chains of glycoproteins. GAO converts galactose residues to their corresponding aldehyde an...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-006-9102-y

    authors: Jeon SI,Hong JW,Yoon HC

    更新日期:2006-09-01 00:00:00

  • Self-cleaving fusion tags for recombinant protein production.

    abstract::Fusion expression is a common practice for recombinant protein production. Some fusion tags confer solubility on the target protein whereas others provide affinity handles that facilitate purification. However, the tag usually needs to be removed from the final product, which involves using expensive proteases or haza...

    journal_title:Biotechnology letters

    pub_type: 杂志文章,评审

    doi:10.1007/s10529-011-0533-8

    authors: Li Y

    更新日期:2011-05-01 00:00:00

  • PMicroRNA-124a regulates LPS-induced septic cardiac dysfunction by targeting STX2.

    abstract:OBJECTIVE:To examine the role of miR-124a in LPS-induced septic cardiac insufficiency where underlying mechanism is unclear. RESULTS:Expression of miR-124a was decreased in myocardium of LPS-induced septic cardiac dysfunction model. miR-124a antagomiR or agomiR were injected via tail vein to induce miR-124a-dysregulat...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-017-2368-4

    authors: Diao X,Sun S

    更新日期:2017-09-01 00:00:00

  • A fluorescence-based Coomassie Blue protocol for two-dimensional gel-based proteomics.

    abstract::A sensitive and convenient "visible SYPRO" staining protocol was developed for visualizing proteins after SDS-PAGE. Gels were sensitized with SYPRO Ruby and then stained with the Coomassie Brilliant Blue G-250 protocol (Blue Silver). This combined protocol had similar or better linearity than staining with only SYPRO ...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-010-0404-8

    authors: Yang Y,Wang J,Bu D,Zhang L,Li S,Zhou L,Wei H

    更新日期:2011-01-01 00:00:00

  • Bioreactors for tissue engineering.

    abstract::Bioreactors are essential in tissue engineering, not only because they provide an in vitro environment mimicking in vivo conditions for the growth of tissue substitutes, but also because they enable systematic studies of the responses of living tissues to various mechanical and biochemical cues. The basic principles o...

    journal_title:Biotechnology letters

    pub_type: 杂志文章,评审

    doi:10.1007/s10529-006-9111-x

    authors: Chen HC,Hu YC

    更新日期:2006-09-01 00:00:00

  • Characterization of the highly variable cry gene regions of Bacillus thuringiensis strain ly4a3 by PCR-SSCP profiling and sequencing.

    abstract::Characterization of cry gene contents can help to predict the insecticidal activities of Bacillus thuringiensis isolates and in the searching of new cry genes. PCR-Single-strand conformation polymorphism (SSCP) profiling and sequencing of the highly variable cry gene regions were used to characterize cry gene content ...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-006-9224-2

    authors: Lin Y,Fang G,Peng K

    更新日期:2007-02-01 00:00:00

  • Comparison of different methods for erythroid differentiation in the K562 cell line.

    abstract:OBJECTIVE:To compare methods for erythroid differentiation of K562 cells that will be promising in the treatment of beta-thalassemia by inducing γ-globin synthesis. RESULTS:Cells were treated separately with: RPMI 1640 medium without glutamine, RPMI 1640 medium without glutamine supplemented with 1 mM sodium butyrate,...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-016-2101-8

    authors: Shariati L,Modaress M,Khanahmad H,Hejazi Z,Tabatabaiefar MA,Salehi M,Modarressi MH

    更新日期:2016-08-01 00:00:00

  • Cloning, characterization and functional expression of a new beta-D-fructofuranosidase (Os beta fruct2) cDNA from Oryza sativa.

    abstract::A new cDNA (Os beta fruct2) encoding an acid beta-D-fructofuranosidase from rice has been cloned, sequenced and expressed in Pichia pastoris. The full-length cDNA is 2453 base pairs long and encodes a pre-pro-protein of 682 amino acids. The cDNA fragment coding for mature enzyme was sub-cloned into vector pPICZalphaA ...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1023/a:1022648211997

    authors: Fu RH,Wang YL,Sung HY

    更新日期:2003-03-01 00:00:00

  • Production of biologically active human lymphotactin (XCL1) by Lactococcus lactis.

    abstract::Lymphotactin-XCL1 is a chemokine produced mainly by activated CD8+ T-cells and directs migration of CD4+ and CD8+ lymphocytes and natural killer (NK) cells. We expressed human lymphotactin (LTN) by the lactic-acid bacterium Lactococcus lactis. Biological activity of LTN was confirmed by chemo-attraction of human T-cel...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-008-9855-6

    authors: Zavala-Flores LM,Villatoro-Hernandez J,Gamez-Escobedo A,Franco-Molina M,Rangel-Colmenero BR,Villanueva-Olivo A,Gutierrez-Puente Y,de Oca-Luna RM,Valdés-Flores J,Saucedo-Cardenas O

    更新日期:2009-02-01 00:00:00

  • Biosynthesis of new lipopentapeptides by an engineered strain of Streptomyces sp.

    abstract::Arylomycins are type I signal peptidase inhibitors and have a potential as a new type of antibiotics. They were identified from the broth of Streptomyces sp. HCCB10043. The arylomycin biosynthetic gene cluster in this strain was identical to that in S. roseosporus. Within the gene cluster, aryC, encoding a P450 enzyme...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-012-1032-2

    authors: Jin X,Rao M,Wei W,Ge M,Liu J,Chen D,Liang Y

    更新日期:2012-12-01 00:00:00

  • Sequencing and de novo analysis of the Chinese Sika deer antler-tip transcriptome during the ossification stage using Illumina RNA-Seq technology.

    abstract::Deer antlers are the only mammalian appendages capable of repeated rounds of regeneration. Every year, deer antlers are shed and regrown from blastema into large branched structures of cartilage and bone. Little is known about the genes involved in antler development particularly during the later stages of ossificatio...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-011-0841-z

    authors: Yao B,Zhao Y,Zhang H,Zhang M,Liu M,Liu H,Li J

    更新日期:2012-05-01 00:00:00

  • Beneficial bacteria of agricultural importance.

    abstract::The rhizosphere is the soil-plant root interphase and in practice consists of the soil adhering to the root besides the loose soil surrounding it. Plant growth-promoting rhizobacteria (PGPR) are potential agents for the biological control of plant pathogens. A biocontrol strain should be able to protect the host plant...

    journal_title:Biotechnology letters

    pub_type: 杂志文章,评审

    doi:10.1007/s10529-010-0347-0

    authors: Babalola OO

    更新日期:2010-11-01 00:00:00

  • Unexpected reversal of the regioselectivity in Thermomyces lanuginosus lipase-catalyzed acylation of floxuridine.

    abstract::Unexpected inversion of the 3':5'-regioselectivity was observed in the enzymatic methacryloylation, crotonylation and cinnamoylation of floxuridine (1.5:1, 2.3:1 and 4.4:1, respectively), where Thermomyces lanuginosus lipase preferentially catalyzed the acylation of 3'-hydroxyl rather than that of 5'-hydroxyl group. T...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-009-0001-x

    authors: Li N,Zong MH,Ma D

    更新日期:2009-08-01 00:00:00

  • Genetically modified soybeans: false-positive detection in fermented natural soybean (tempe).

    abstract::Tempe was prepared using mixtures of natural soybean and genetically modified Roundup Ready (RUR) soybean fermented with natural Rhizopus sp. The amount of RUR soybean was quantified using an ELISA plate test. The RUR signal decreased during fermentation. In the control experiments on fermentation of non-RUR soybean, ...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1023/a:1025449902523

    authors: Prakoso B,Nitisinprasert S,Stevens WF

    更新日期:2003-09-01 00:00:00

  • Random mutagenesis and recombination of sam1 gene by integrating error-prone PCR with staggered extension process.

    abstract::An efficient method for creating a DNA library is presented in which gene mutagenesis and recombination can be introduced by integrating error-prone PCR with a staggered extension process in one test tube. In this process, less than 15 cycles of error-prone PCR are used to introduce random mutations. After precipitate...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-008-9674-9

    authors: An Y,Ji J,Wu W,Huang R,Wei Y,Xiu Z

    更新日期:2008-07-01 00:00:00

  • Immobilization of Pseudomonas cepacia lipase onto electrospun polyacrylonitrile fibers through physical adsorption and application to transesterification in nonaqueous solvent.

    abstract::The lipase of Pseudomonas cepacia was immobilized onto electrospun polyacrylonitrile (PAN) fibers and used for the conversion of (S)-glycidol with vinyl n-butyrate to glycidyl n-butyrate in isooctane. The rate of reaction with the adsorbed lipase was 23-fold higher than the initial material. After 10 recyclings, the i...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-010-0279-8

    authors: Sakai S,Liu Y,Yamaguchi T,Watanabe R,Kawabe M,Kawakami K

    更新日期:2010-08-01 00:00:00

  • Anti-prelog reduction of prochiral carbonyl compounds by Oenococcus oeni in a biphasic system.

    abstract::An aqueous-organic biphasic system was established and used with whole cells of Oenococcus oeni to reduce 2-octanone to (R)-2-octanol. The conversion reached 99% when the Tris/borate buffer was increased from 50 mM to 300 mM in the aqueous phase. In addition, the conversion increased as the log P value of the organic ...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-006-9062-2

    authors: Hu J,Xu Y

    更新日期:2006-07-01 00:00:00

  • HuR facilitates cancer stemness of lung cancer cells via regulating miR-873/CDK3 and miR-125a-3p/CDK3 axis.

    abstract:OBJECTIVES:To study the roles and mechanisms of HuR in cancer stem cell maintenance of lung cancer. RESULTS:HuR expression was increased in tumor spheres of lung cancer cells. Knockdown of HuR suppressed spheroid formation and size, inhibited the expression of stemness-related marker, Oct4, Nanog and ALDH in lung canc...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-018-2512-9

    authors: Zhang Y,Yang L,Ling C,Heng W

    更新日期:2018-04-01 00:00:00

  • 3D in vitro co-culture models based on normal cells and tumor spheroids formed by cyclic RGD-peptide induced cell self-assembly.

    abstract:OBJECTIVES:To design novel 3D in vitro co-culture models based on the RGD-peptide-induced cell self-assembly technique. RESULTS:Multicellular spheroids from M-3 murine melanoma cells and L-929 murine fibroblasts were obtained directly from monolayer culture by addition of culture medium containing cyclic RGD-peptide. ...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-016-2218-9

    authors: Akasov R,Gileva A,Zaytseva-Zotova D,Burov S,Chevalot I,Guedon E,Markvicheva E

    更新日期:2017-01-01 00:00:00

  • Simplified approach for developing the rate expressions for enzyme-catalyzed reactions.

    abstract::A Simplified version of rate equations for enzyme-catalyzed reactions has been developed in which the rate equation is analyzed with two different mechanisms: ordered bi-ter and Ping-Pong bi-bi mechanisms. This procedure is able to develop the rate expressions accurately. Random sequential order mechanism can be effec...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-006-9172-x

    authors: Thilakavathi M,Basak T,Panda T

    更新日期:2006-12-01 00:00:00

  • Synergistic effects of TAL1 over-expression and PHO13 deletion on the weak acid inhibition of xylose fermentation by industrial Saccharomyces cerevisiae strain.

    abstract::In the industrial production of bioethanol from lignocellulosic biomass, a strain of Saccharomyces cerevisiae that can ferment xylose in the presence of inhibitors is of utmost importance. The recombinant, industrial-flocculating S. cerevisiae strain NAPX37, which can ferment xylose, was used as the parent to delete t...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-014-1581-7

    authors: Li YC,Gou ZX,Liu ZS,Tang YQ,Akamatsu T,Kida K

    更新日期:2014-10-01 00:00:00

  • Synthesis, expression and purification of a type of chlorotoxin-like peptide from the scorpion, Buthus martensii Karsch, and its acute toxicity analysis.

    abstract::A gene, rBmK Cta, encoding a chlorotoxin-like peptide from the scorpion, Buthus martensii Karsch, was synthesized according to the sequence optimized for codon usage in Escherichia coli and was expressed in E. coli BL21 (DE3) using a pExSecI expression system in which the IgG-binding domain-ZZ of protein A is fused to...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-005-2514-2

    authors: Fu YJ,Yin LT,Wang W,Chai BF,Liang AH

    更新日期:2005-10-01 00:00:00

  • Over-expression of recombinant human phospholipid scramblase 1 in E. coli and its purification from inclusion bodies.

    abstract::Human phospholipid scramblase 1 (hPLSCR1) scrambles plasma membrane phospholipids during cell activation, blood coagulation and apoptosis. It was over-expressed in E. coli with a histidine tag and purified from the inclusion bodies (*30 mg/l culture broth) under denaturing conditions using 8 M urea. The denatured hPLS...

    journal_title:Biotechnology letters

    pub_type: 杂志文章

    doi:10.1007/s10529-008-9797-z

    authors: Sahu SK,Gopala Krishna A,Gummadi SN

    更新日期:2008-12-01 00:00:00