Frequent mutations in chromatin-remodelling genes in pulmonary carcinoids.

Abstract:

:Pulmonary carcinoids are rare neuroendocrine tumours of the lung. The molecular alterations underlying the pathogenesis of these tumours have not been systematically studied so far. Here we perform gene copy number analysis (n=54), genome/exome (n=44) and transcriptome (n=69) sequencing of pulmonary carcinoids and observe frequent mutations in chromatin-remodelling genes. Covalent histone modifiers and subunits of the SWI/SNF complex are mutated in 40 and 22.2% of the cases, respectively, with MEN1, PSIP1 and ARID1A being recurrently affected. In contrast to small-cell lung cancer and large-cell neuroendocrine lung tumours, TP53 and RB1 mutations are rare events, suggesting that pulmonary carcinoids are not early progenitor lesions of the highly aggressive lung neuroendocrine tumours but arise through independent cellular mechanisms. These data also suggest that inactivation of chromatin-remodelling genes is sufficient to drive transformation in pulmonary carcinoids.

journal_name

Nat Commun

journal_title

Nature communications

authors

Fernandez-Cuesta L,Peifer M,Lu X,Sun R,Ozretić L,Seidal D,Zander T,Leenders F,George J,Müller C,Dahmen I,Pinther B,Bosco G,Konrad K,Altmüller J,Nürnberg P,Achter V,Lang U,Schneider PM,Bogus M,Soltermann A,Brustu

doi

10.1038/ncomms4518

subject

Has Abstract

pub_date

2014-03-27 00:00:00

pages

3518

issn

2041-1723

journal_volume

5

pub_type

杂志文章
  • Hematopoietic stem and progenitor cell-restricted Cdx2 expression induces transformation to myelodysplasia and acute leukemia.

    abstract::The caudal-related homeobox transcription factor CDX2 is expressed in leukemic cells but not during normal blood formation. Retroviral overexpression of Cdx2 induces AML in mice, however the developmental stage at which CDX2 exerts its effect is unknown. We developed a conditionally inducible Cdx2 mouse model to deter...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-16840-2

    authors: Vu T,Straube J,Porter AH,Bywater M,Song A,Ling V,Cooper L,Pali G,Bruedigam C,Jacquelin S,Green J,Magor G,Perkins A,Chalk AM,Walkley CR,Heidel FH,Mukhopadhyay P,Cloonan N,Gröschel S,Mallm JP,Fröhling S,Scholl C,

    更新日期:2020-06-15 00:00:00

  • Quantifying similarity of pore-geometry in nanoporous materials.

    abstract::In most applications of nanoporous materials the pore structure is as important as the chemical composition as a determinant of performance. For example, one can alter performance in applications like carbon capture or methane storage by orders of magnitude by only modifying the pore structure. For these applications ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms15396

    authors: Lee Y,Barthel SD,Dłotko P,Moosavi SM,Hess K,Smit B

    更新日期:2017-05-23 00:00:00

  • Diatomite derived hierarchical hybrid anode for high performance all-solid-state lithium metal batteries.

    abstract::Lithium metal based anode with hierarchical structure to enable high rate capability, volume change accommodation, and dendritic suppression is highly desirable for all-solid-state lithium metal battery. However, the fabrication of hierarchical lithium metal based anode is challenging due to the volatility of lithium....

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-10473-w

    authors: Zhou F,Li Z,Lu YY,Shen B,Guan Y,Wang XX,Yin YC,Zhu BS,Lu LL,Ni Y,Cui Y,Yao HB,Yu SH

    更新日期:2019-06-06 00:00:00

  • Control of the spin geometric phase in semiconductor quantum rings.

    abstract::Since the formulation of the geometric phase by Berry, its relevance has been demonstrated in a large variety of physical systems. However, a geometric phase of the most fundamental spin-1/2 system, the electron spin, has not been observed directly and controlled independently from dynamical phases. Here we report exp...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms3526

    authors: Nagasawa F,Frustaglia D,Saarikoski H,Richter K,Nitta J

    更新日期:2013-01-01 00:00:00

  • On quantum gravity tests with composite particles.

    abstract::Models of quantum gravity imply a fundamental revision of our description of position and momentum that manifests in modifications of the canonical commutation relations. Experimental tests of such modifications remain an outstanding challenge. These corrections scale with the mass of test particles, which motivates e...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-17518-5

    authors: Kumar SP,Plenio MB

    更新日期:2020-08-06 00:00:00

  • Direct cellular delivery of human proteasomes to delay tau aggregation.

    abstract::The 26S proteasome is the primary machinery that degrades ubiquitin (Ub)-conjugated proteins, including many proteotoxic proteins implicated in neurodegeneraton. It has been suggested that the elevation of proteasomal activity is tolerable to cells and may be beneficial to prevent the accumulation of protein aggregate...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms6633

    authors: Han DH,Na HK,Choi WH,Lee JH,Kim YK,Won C,Lee SH,Kim KP,Kuret J,Min DH,Lee MJ

    更新日期:2014-12-05 00:00:00

  • Optimal COVID-19 quarantine and testing strategies.

    abstract::For COVID-19, it is vital to understand if quarantines shorter than 14 days can be equally effective with judiciously deployed testing. Here, we develop a mathematical model that quantifies the probability of post-quarantine transmission incorporating testing into travel quarantine, quarantine of traced contacts with ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-20742-8

    authors: Wells CR,Townsend JP,Pandey A,Moghadas SM,Krieger G,Singer B,McDonald RH,Fitzpatrick MC,Galvani AP

    更新日期:2021-01-07 00:00:00

  • Surveying biomolecular frustration at atomic resolution.

    abstract::To function, biomolecules require sufficient specificity of interaction as well as stability to live in the cell while still being able to move. Thermodynamic stability of only a limited number of specific structures is important so as to prevent promiscuous interactions. The individual interactions in proteins, there...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-19560-9

    authors: Chen M,Chen X,Schafer NP,Clementi C,Komives EA,Ferreiro DU,Wolynes PG

    更新日期:2020-11-23 00:00:00

  • Single spin localization and manipulation in graphene open-shell nanostructures.

    abstract::Turning graphene magnetic is a promising challenge to make it an active material for spintronics. Predictions state that graphene structures with specific shapes can spontaneously develop magnetism driven by Coulomb repulsion of π-electrons, but its experimental verification is demanding. Here, we report on the observ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-08060-6

    authors: Li J,Sanz S,Corso M,Choi DJ,Peña D,Frederiksen T,Pascual JI

    更新日期:2019-01-14 00:00:00

  • Single-shot spectro-temporal characterization of XUV pulses from a seeded free-electron laser.

    abstract::Intense ultrashort X-ray pulses produced by modern free-electron lasers (FELs) allow one to probe biological systems, inorganic materials and molecular reaction dynamics with nanoscale spatial and femtoscale temporal resolution. These experiments require the knowledge, and possibly the control, of the spectro-temporal...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms9075

    authors: De Ninno G,Gauthier D,Mahieu B,Ribič PR,Allaria E,Cinquegrana P,Danailov MB,Demidovich A,Ferrari E,Giannessi L,Penco G,Sigalotti P,Stupar M

    更新日期:2015-08-20 00:00:00

  • Surface-wetting effects on the liquid-liquid transition of a single-component molecular liquid.

    abstract::Even a single-component liquid may have more than two liquid states. The transition between them is called a 'liquid-liquid transition' (LLT). Such LLTs have recently attracted considerable attention mainly because of the fundamental interest in the physical origin of this counter-intuitive phenomenon. In this study, ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms1015

    authors: Murata K,Tanaka H

    更新日期:2010-05-04 00:00:00

  • Low frequency transcranial electrical stimulation does not entrain sleep rhythms measured by human intracranial recordings.

    abstract::Transcranial electrical stimulation has widespread clinical and research applications, yet its effect on ongoing neural activity in humans is not well established. Previous reports argue that transcranial alternating current stimulation (tACS) can entrain and enhance neural rhythms related to memory, but the evidence ...

    journal_title:Nature communications

    pub_type: 临床试验,杂志文章

    doi:10.1038/s41467-017-01045-x

    authors: Lafon B,Henin S,Huang Y,Friedman D,Melloni L,Thesen T,Doyle W,Buzsáki G,Devinsky O,Parra LC,A Liu A

    更新日期:2017-10-31 00:00:00

  • NOX4 functions as a mitochondrial energetic sensor coupling cancer metabolic reprogramming to drug resistance.

    abstract::The molecular mechanisms that couple glycolysis to cancer drug resistance remain unclear. Here we identify an ATP-binding motif within the NADPH oxidase isoform, NOX4, and show that ATP directly binds and negatively regulates NOX4 activity. We find that NOX4 localizes to the inner mitochondria membrane and that subcel...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-017-01106-1

    authors: Shanmugasundaram K,Nayak BK,Friedrichs WE,Kaushik D,Rodriguez R,Block K

    更新日期:2017-10-19 00:00:00

  • Release of SOS2 kinase from sequestration with GIGANTEA determines salt tolerance in Arabidopsis.

    abstract::Environmental challenges to plants typically entail retardation of vegetative growth and delay or cessation of flowering. Here we report a link between the flowering time regulator, GIGANTEA (GI), and adaptation to salt stress that is mechanistically based on GI degradation under saline conditions, thus retarding flow...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms2357

    authors: Kim WY,Ali Z,Park HJ,Park SJ,Cha JY,Perez-Hormaeche J,Quintero FJ,Shin G,Kim MR,Qiang Z,Ning L,Park HC,Lee SY,Bressan RA,Pardo JM,Bohnert HJ,Yun DJ

    更新日期:2013-01-01 00:00:00

  • ADAR-mediated RNA editing suppresses sleep by acting as a brake on glutamatergic synaptic plasticity.

    abstract::It has been postulated that synaptic potentiation during waking is offset by a homoeostatic reduction in net synaptic strength during sleep. However, molecular mechanisms to support such a process are lacking. Here we demonstrate that deficiencies in the RNA-editing gene Adar increase sleep due to synaptic dysfunction...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms10512

    authors: Robinson JE,Paluch J,Dickman DK,Joiner WJ

    更新日期:2016-01-27 00:00:00

  • Circuit quantum acoustodynamics with surface acoustic waves.

    abstract::The experimental investigation of quantum devices incorporating mechanical resonators has opened up new frontiers in the study of quantum mechanics at a macroscopic level. It has recently been shown that surface acoustic waves (SAWs) can be piezoelectrically coupled to superconducting qubits, and confined in high-qual...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-017-01063-9

    authors: Manenti R,Kockum AF,Patterson A,Behrle T,Rahamim J,Tancredi G,Nori F,Leek PJ

    更新日期:2017-10-17 00:00:00

  • Author Correction: Hydrophobic pore gates regulate ion permeation in polycystic kidney disease 2 and 2L1 channels.

    abstract::The original version of this Article contained an error in the spelling of the author David Bulkley, which was incorrectly given as David Bulkey. This has now been corrected in both the PDF and HTML versions of the Article. ...

    journal_title:Nature communications

    pub_type: 杂志文章,已发布勘误

    doi:10.1038/s41467-019-09422-4

    authors: Zheng W,Yang X,Hu R,Cai R,Hofmann L,Wang Z,Hu Q,Liu X,Bulkley D,Yu Y,Tang J,Flockerzi V,Cao Y,Cao E,Chen XZ

    更新日期:2019-03-26 00:00:00

  • Superplume mantle tracked isotopically the length of Africa from the Indian Ocean to the Red Sea.

    abstract::Seismological findings show a complex scenario of plume upwellings from a deep thermo-chemical anomaly (superplume) beneath the East African Rift System (EARS). It is unclear if these geophysical observations represent a true picture of the superplume and its influence on magmatism along the EARS. Thus, it is essentia...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-13181-7

    authors: O'Connor JM,Jokat W,Regelous M,Kuiper KF,Miggins DP,Koppers AAP

    更新日期:2019-12-02 00:00:00

  • Topographical pathways guide chemical microswimmers.

    abstract::Achieving control over the directionality of active colloids is essential for their use in practical applications such as cargo carriers in microfluidic devices. So far, guidance of spherical Janus colloids was mainly realized using specially engineered magnetic multilayer coatings combined with external magnetic fiel...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms10598

    authors: Simmchen J,Katuri J,Uspal WE,Popescu MN,Tasinkevych M,Sánchez S

    更新日期:2016-02-09 00:00:00

  • Polarization screening-induced magnetic phase gradients at complex oxide interfaces.

    abstract::Thin-film oxide heterostructures show great potential for use in spintronic memories, where electronic charge and spin are coupled to transport information. Here we use a La0.7Sr0.3MnO3 (LSMO)/PbZr0.2Ti0.8O3 (PZT) model system to explore how local variations in electronic and magnetic phases mediate this coupling. We ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms7735

    authors: Spurgeon SR,Balachandran PV,Kepaptsoglou DM,Damodaran AR,Karthik J,Nejati S,Jones L,Ambaye H,Lauter V,Ramasse QM,Lau KKS,Martin LW,Rondinelli JM,Taheri ML

    更新日期:2015-04-16 00:00:00

  • Surface tension and contact with soft elastic solids.

    abstract::The Johnson-Kendall-Roberts theory is the basis of modern contact mechanics. It describes how two deformable objects adhere together, driven by adhesion energy and opposed by elasticity. Here we characterize the indentation of glass particles into soft, silicone substrates using confocal microscopy. We show that, wher...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms3728

    authors: Style RW,Hyland C,Boltyanskiy R,Wettlaufer JS,Dufresne ER

    更新日期:2013-01-01 00:00:00

  • Stiff filamentous virus translocations through solid-state nanopores.

    abstract::The ionic conductance through a nanometer-sized pore in a membrane changes when a biopolymer slides through it, making nanopores sensitive to single molecules in solution. Their possible use for sequencing has motivated numerous studies on how DNA, a semi-flexible polymer, translocates nanopores. Here we study voltage...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms5171

    authors: McMullen A,de Haan HW,Tang JX,Stein D

    更新日期:2014-06-16 00:00:00

  • Rab27a co-ordinates actin-dependent transport by controlling organelle-associated motors and track assembly proteins.

    abstract::Cell biologists generally consider that microtubules and actin play complementary roles in long- and short-distance transport in animal cells. On the contrary, using melanosomes of melanocytes as a model, we recently discovered that the motor protein myosin-Va works with dynamic actin tracks to drive long-range organe...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-17212-6

    authors: Alzahofi N,Welz T,Robinson CL,Page EL,Briggs DA,Stainthorp AK,Reekes J,Elbe DA,Straub F,Kallemeijn WW,Tate EW,Goff PS,Sviderskaya EV,Cantero M,Montoliu L,Nedelec F,Miles AK,Bailly M,Kerkhoff E,Hume AN

    更新日期:2020-07-13 00:00:00

  • TCR microclusters form spatially segregated domains and sequentially assemble in calcium-dependent kinetic steps.

    abstract::Engagement of the T cell receptor (TCR) by stimulatory ligand results in the rapid formation of microclusters at sites of T cell activation. Whereas microclusters have been studied extensively using confocal microscopy, the spatial and kinetic relationships of their signaling components have not been well characterize...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-08064-2

    authors: Yi J,Balagopalan L,Nguyen T,McIntire KM,Samelson LE

    更新日期:2019-01-17 00:00:00

  • Terminal uranium(V)-nitride hydrogenations involving direct addition or Frustrated Lewis Pair mechanisms.

    abstract::Despite their importance as mechanistic models for heterogeneous Haber Bosch ammonia synthesis from dinitrogen and dihydrogen, homogeneous molecular terminal metal-nitrides are notoriously unreactive towards dihydrogen, and only a few electron-rich, low-coordinate variants demonstrate any hydrogenolysis chemistry. Her...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-14221-y

    authors: Chatelain L,Louyriac E,Douair I,Lu E,Tuna F,Wooles AJ,Gardner BM,Maron L,Liddle ST

    更新日期:2020-01-17 00:00:00

  • The evolution of the temporal program of genome replication.

    abstract::Genome replication is highly regulated in time and space, but the rules governing the remodeling of these programs during evolution remain largely unknown. We generated genome-wide replication timing profiles for ten Lachancea yeasts, covering a continuous evolutionary range from closely related to more divergent spec...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-04628-4

    authors: Agier N,Delmas S,Zhang Q,Fleiss A,Jaszczyszyn Y,van Dijk E,Thermes C,Weigt M,Cosentino-Lagomarsino M,Fischer G

    更新日期:2018-06-06 00:00:00

  • Tuning charge and correlation effects for a single molecule on a graphene device.

    abstract::The ability to understand and control the electronic properties of individual molecules in a device environment is crucial for developing future technologies at the nanometre scale and below. Achieving this, however, requires the creation of three-terminal devices that allow single molecules to be both gated and image...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms13553

    authors: Wickenburg S,Lu J,Lischner J,Tsai HZ,Omrani AA,Riss A,Karrasch C,Bradley A,Jung HS,Khajeh R,Wong D,Watanabe K,Taniguchi T,Zettl A,Neto AHC,Louie SG,Crommie MF

    更新日期:2016-11-25 00:00:00

  • The structure of Zika virus NS5 reveals a conserved domain conformation.

    abstract::The recent outbreak of Zika virus (ZIKV) has imposed a serious threat to public health. Here we report the crystal structure of the ZIKV NS5 protein in complex with S-adenosyl-L-homocysteine, in which the tandem methyltransferase (MTase) and RNA-dependent RNA polymerase (RdRp) domains stack into one of the two alterna...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms14763

    authors: Wang B,Tan XF,Thurmond S,Zhang ZM,Lin A,Hai R,Song J

    更新日期:2017-03-27 00:00:00

  • Quantitative volumetric Raman imaging of three dimensional cell cultures.

    abstract::The ability to simultaneously image multiple biomolecules in biologically relevant three-dimensional (3D) cell culture environments would contribute greatly to the understanding of complex cellular mechanisms and cell-material interactions. Here, we present a computational framework for label-free quantitative volumet...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms14843

    authors: Kallepitis C,Bergholt MS,Mazo MM,Leonardo V,Skaalure SC,Maynard SA,Stevens MM

    更新日期:2017-03-22 00:00:00

  • Harnessing the landscape of microbial culture media to predict new organism-media pairings.

    abstract::Culturing microorganisms is a critical step in understanding and utilizing microbial life. Here we map the landscape of existing culture media by extracting natural-language media recipes into a Known Media Database (KOMODO), which includes >18,000 strain-media combinations, >3300 media variants and compound concentra...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms9493

    authors: Oberhardt MA,Zarecki R,Gronow S,Lang E,Klenk HP,Gophna U,Ruppin E

    更新日期:2015-10-13 00:00:00