Exegeses on maximum genetic differentiation.

Abstract:

:A canon of population genetics concerns the properties of FST, a descriptor of spatial genetic structure. Interest for FST arose from Wright's early insights linking FST to dispersal parameters as well as to his concept of effective population size (e.g., Wright 1938, 1951). Although there is continued interest in this topic, FST also serves in other applications, such as detecting selected markers in natural populations (Beaumont and Nichols 1996) and more often in routine descriptive works. Remarkably, it is the latter use that seems to attract most discussion. Alternative descriptors have been proposed. Conversely, attempts have been made to draw biological inferences from FST properties that do not depend on biological processes. A reconsideration of its properties under biological scenarios underlines the weaknesses of such approaches.

journal_name

Genetics

journal_title

Genetics

authors

Rousset F

doi

10.1534/genetics.113.152132

subject

Has Abstract

pub_date

2013-07-01 00:00:00

pages

557-9

issue

3

eissn

0016-6731

issn

1943-2631

pii

194/3/557

journal_volume

194

pub_type

评论,杂志文章

相关文献

GENETICS文献大全
  • Kin selection is implicated in partial sib-mating populations with constant viability differences before mating.

    abstract::The change in the frequency of a rare mutant allele under constant sex-differentiated viability selection in an infinite, partial full-sib mating population is studied. The diplo-diploid and haplo-diploid polygynous models are considered with a Poisson distribution for the number of offspring produced by every mated f...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.104.039024

    authors: Lessard S

    更新日期:2005-09-01 00:00:00

  • Does Stellate cause meiotic drive in Drosophila melanogaster?

    abstract::Drosophila melanogaster males deficient for the crystal (cry) locus of the Y chromosome that carry between 15 and 60 copies of the X-linked Stellate (Ste) gene are semisterile, have elevated levels of nondisjunction, produce distorted sperm genotype ratios (meiotic drive), and evince hyperactive transcription of Ste i...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Belloni M,Tritto P,Bozzetti MP,Palumbo G,Robbins LG

    更新日期:2002-08-01 00:00:00

  • The molecular structure of TE146 and its derivatives in Drosophila melanogaster.

    abstract::TE146 is a giant transposon of Drosophila melanogaster. It carries two copies of the white and roughest genes, normally found on the X chromosome. The structure of this transposon has been studied at the molecular level. TE146 may transpose to new chromosome positions, excise and be lost from the genome or undergo int...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Lovering R,Harden N,Ashburner M

    更新日期:1991-06-01 00:00:00

  • Rapid identification of major-effect genes using the collaborative cross.

    abstract::The Collaborative Cross (CC) was designed to facilitate rapid gene mapping and consists of hundreds of recombinant inbred lines descended from eight diverse inbred founder strains. A decade in production, it can now be applied to mapping projects. Here, we provide a proof of principle for rapid identification of major...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.114.163014

    authors: Ram R,Mehta M,Balmer L,Gatti DM,Morahan G

    更新日期:2014-09-01 00:00:00

  • Genetic analysis of the Drosophila alphaPS2 integrin subunit reveals discrete adhesive, morphogenetic and sarcomeric functions.

    abstract::The integrin family of cell surface receptors mediates cell-substrate and cell-to-cell adhesion and transmits intracellular signals. In Drosophila there is good evidence for an adhesive role of integrins, but evidence for integrin signalling has remained elusive. Each integrin is an alphabeta heterodimer, and the Dros...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Bloor JW,Brown NH

    更新日期:1998-03-01 00:00:00

  • Vps factors are required for efficient transcription elongation in budding yeast.

    abstract::There is increasing evidence that certain Vacuolar protein sorting (Vps) proteins, factors that mediate vesicular protein trafficking, have additional roles in regulating transcription factors at the endosome. We found that yeast mutants lacking the phosphatidylinositol 3-phosphate [PI(3)P] kinase Vps34 or its associa...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.112.146308

    authors: Gaur NA,Hasek J,Brickner DG,Qiu H,Zhang F,Wong CM,Malcova I,Vasicova P,Brickner JH,Hinnebusch AG

    更新日期:2013-03-01 00:00:00

  • Dynamic Bayesian testing of sets of variants in complex diseases.

    abstract::Rare genetic variants have recently been studied for genome-wide associations with human complex diseases. Existing rare variant methods are based on the hypothesis-testing framework that predefined variant sets need to be tested separately. The power of those methods is contingent upon accurate selection of variants ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.114.167403

    authors: Zhang Y,Ghosh S,Hakonarson H

    更新日期:2014-11-01 00:00:00

  • Genotyping Polyploids from Messy Sequencing Data.

    abstract::Detecting and quantifying the differences in individual genomes (i.e., genotyping), plays a fundamental role in most modern bioinformatics pipelines. Many scientists now use reduced representation next-generation sequencing (NGS) approaches for genotyping. Genotyping diploid individuals using NGS is a well-studied fie...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.118.301468

    authors: Gerard D,Ferrão LFV,Garcia AAF,Stephens M

    更新日期:2018-11-01 00:00:00

  • Fold recognition of the human immunodeficiency virus type 1 V3 loop and flexibility of its crown structure during the course of adaptation to a host.

    abstract::The third hypervariable (V3) region of the HIV-1 gp120 protein is responsible for many aspects of viral infectivity. The tertiary structure of the V3 loop seems to influence the coreceptor usage of the virus, which is an important determinant of HIV pathogenesis. Hence, the information about preferred conformations of...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.105.051508

    authors: Watabe T,Kishino H,Okuhara Y,Kitazoe Y

    更新日期:2006-03-01 00:00:00

  • Prion variants and species barriers among Saccharomyces Ure2 proteins.

    abstract::As hamster scrapie cannot infect mice, due to sequence differences in their PrP proteins, we find "species barriers" to transmission of the [URE3] prion in Saccharomyces cerevisiae among Ure2 proteins of S. cerevisiae, paradoxus, bayanus, cariocanus, and mikatae on the basis of differences among their Ure2p prion doma...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.108.099929

    authors: Edskes HK,McCann LM,Hebert AM,Wickner RB

    更新日期:2009-03-01 00:00:00

  • The molecular basis of multiple vector insertion by gene targeting in mammalian cells.

    abstract::Gene targeting using sequence insertion vectors generally results in integration of one copy of the targeting vector generating a tandem duplication of the cognate chromosomal region of homology. However, occasionally the target locus is found to contain >1 copy of the integrated vector. The mechanism by which the lat...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Ng P,Baker MD

    更新日期:1999-03-01 00:00:00

  • Linkage relationships of nine enzyme Loci in sunfishes (lepomis; centrarchidae).

    abstract::Linkage relationships of nine enzyme loci; aconitase (Acon ), esterase (Est), glucosephosphate isomerase A and B ( Gpi), glycerate-2-dehydrogenase (G2dh), malic enzyme (Me ), phosphoglycerate kinase (Pgk), phosphoglucomutase (Pgm ) and superoxide dismutase (Sod), were investigated in sunfishes (Lepomis, Centrarchidae)...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Pasdar M,Philipp DP,Whitt GS

    更新日期:1984-07-01 00:00:00

  • The distribution of mutation effects on viability in Drosophila melanogaster.

    abstract::Parameters of continuous distributions of effects and rates of spontaneous mutation for relative viability in Drosophila are estimated by maximum likelihood from data of two published experiments on accumulation of mutations on protected second chromosomes. A model of equal mutant effects gives a poor fit to the data ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Keightley PD

    更新日期:1994-12-01 00:00:00

  • Maternal inheritance of mouse mtDNA in interspecific hybrids: segregation of the leaked paternal mtDNA followed by the prevention of subsequent paternal leakage.

    abstract::The transmission profiles of sperm mtDNA introduced into fertilized eggs were examined in detail in F1 hybrids of mouse interspecific crosses by addressing three aspects. The first is whether the leaked paternal mtDNA in fertilized eggs produced by interspecific crosses was distributed stably to all tissues after the ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Shitara H,Hayashi JI,Takahama S,Kaneda H,Yonekawa H

    更新日期:1998-02-01 00:00:00

  • A cis-regulatory mutation in troponin-I of Drosophila reveals the importance of proper stoichiometry of structural proteins during muscle assembly.

    abstract::Rapid and high wing-beat frequencies achieved during insect flight are powered by the indirect flight muscles, the largest group of muscles present in the thorax. Any anomaly during the assembly and/or structural impairment of the indirect flight muscles gives rise to a flightless phenotype. Multiple mutagenesis scree...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.115.175604

    authors: Firdaus H,Mohan J,Naz S,Arathi P,Ramesh SR,Nongthomba U

    更新日期:2015-05-01 00:00:00

  • Mutation frequency and specificity with age in liver, bladder and brain of lacI transgenic mice.

    abstract::Mutation frequency and specificity were determined as a function of age in nuclear DNA from liver, bladder, and brain of Big Blue lacI transgenic mice aged 1.5-25 months. Mutations accumulated with age in liver and accumulated more rapidly in bladder. In the brain a small initial increase in mutation frequency was obs...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Stuart GR,Oda Y,de Boer JG,Glickman BW

    更新日期:2000-03-01 00:00:00

  • Improved Use of Small Reference Panels for Conditional and Joint Analysis with GWAS Summary Statistics.

    abstract::Due to issues of practicality and confidentiality of genomic data sharing on a large scale, typically only meta- or mega-analyzed genome-wide association study (GWAS) summary data, not individual-level data, are publicly available. Reanalyses of such GWAS summary data for a wide range of applications have become more ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.118.300813

    authors: Deng Y,Pan W

    更新日期:2018-06-01 00:00:00

  • Role of testis-specific gene expression in sex-chromosome evolution of Anopheles gambiae.

    abstract::Gene expression in Anopheles gambiae shows a deficiency of testis-expressed genes on the X chromosome associated with an excessive movement of retrogene duplication. We suggest that the degeneration of sex chromosomes in this monandrous species is likely the result of pressures from X inactivation, dosage compensation...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.111.133157

    authors: Baker DA,Russell S

    更新日期:2011-11-01 00:00:00

  • Genome properties and prospects of genomic prediction of hybrid performance in a breeding program of maize.

    abstract::Maize (Zea mays L.) serves as model plant for heterosis research and is the crop where hybrid breeding was pioneered. We analyzed genomic and phenotypic data of 1254 hybrids of a typical maize hybrid breeding program based on the important Dent × Flint heterotic pattern. Our main objectives were to investigate genome ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.114.165860

    authors: Technow F,Schrag TA,Schipprack W,Bauer E,Simianer H,Melchinger AE

    更新日期:2014-08-01 00:00:00

  • The role of Gcr1p in the transcriptional activation of glycolytic genes in yeast Saccharomyces cerevisiae.

    abstract::To study the interdependence of Gcr1p and Rap1p, we prepared a series of synthetic regulatory sequences that contained various numbers and combinations of CT-boxes (Gcr1p-binding sites) and RPG-boxes (Rap1p-binding sites). The ability of the synthetic oligonucleotides to function as regulatory sequences was tested usi...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Uemura H,Koshio M,Inoue Y,Lopez MC,Baker HV

    更新日期:1997-10-01 00:00:00

  • Genetic and morphological study of aggregation in the cellular slime mold Polysphondylium violaceum.

    abstract::A system for genetic analysis in the cellular slime mold P. violaceum has been developed. Two growth-temperature-sensitive mutants were isolated in a haploid strain and used to select rare diploid heterozygotes arising by spontaneous fusion of the haploid cells. A recessive mutation to cycloheximide resistance in one ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Warren AJ,Warren WD,Cox EC

    更新日期:1976-05-01 00:00:00

  • The qSD12 locus controls offspring tissue-imposed seed dormancy in rice.

    abstract::Seed component structures were grouped into maternal and offspring (embryo and endosperm) tissues to characterize a dormancy quantitative trait locus (QTL) for tissue-specific function using a marker-assisted genetic approach. The approach was devised to test if genotypic/allelic frequencies of a marker tightly linked...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.108.092007

    authors: Gu XY,Turnipseed EB,Foley ME

    更新日期:2008-08-01 00:00:00

  • Restoration of topoisomerase 2 function by complementation of defective monomers in Drosophila.

    abstract::Type II topoisomerases are essential ATP-dependent homodimeric enzymes required for transcription, replication, and chromosome segregation. These proteins alter DNA topology by generating transient enzyme-linked double-strand breaks for passage of one DNA strand through another. The central role of type II topoisomera...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.112.144006

    authors: Hohl AM,Thompson M,Soshnev AA,Wu J,Morris J,Hsieh TS,Wu CT,Geyer PK

    更新日期:2012-11-01 00:00:00

  • egl-4 acts through a transforming growth factor-beta/SMAD pathway in Caenorhabditis elegans to regulate multiple neuronal circuits in response to sensory cues.

    abstract::Sensory cues regulate several aspects of behavior and development in Caenorhabditis elegans, including entry into and exit from an alternative developmental stage called the dauer larva. Three parallel pathways, including a TGF-beta-like pathway, regulate dauer formation. The mechanisms by which the activities of thes...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Daniels SA,Ailion M,Thomas JH,Sengupta P

    更新日期:2000-09-01 00:00:00

  • A functional module of yeast mediator that governs the dynamic range of heat-shock gene expression.

    abstract::We report the results of a genetic screen designed to identify transcriptional coregulators of yeast heat-shock factor (HSF). This sequence-specific activator is required to stimulate both basal and induced transcription; however, the identity of factors that collaborate with HSF in governing noninduced heat-shock gen...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.105.052738

    authors: Singh H,Erkine AM,Kremer SB,Duttweiler HM,Davis DA,Iqbal J,Gross RR,Gross DS

    更新日期:2006-04-01 00:00:00

  • Improving quantitative trait loci mapping resolution in experimental crosses by the use of genotypically selected samples.

    abstract::One of the key factors contributing to the success of a quantitative trait locus (QTL) mapping experiment is the precision with which QTL positions can be estimated. We show, using simulations, that QTL mapping precision for an experimental cross can be increased by the use of a genotypically selected sample of indivi...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.104.033746

    authors: Xu Z,Zou F,Vision TJ

    更新日期:2005-05-01 00:00:00

  • Specificity of insertion by the translocatable tetracycline-resistance element Tn10.

    abstract::Genetic analysis of 131 independent transpositions of the tetracycline-resistance element Tn10 from a single site in phage P22 into the histidine operon of Salmonella typhimurium reveals that Tn10 insertions are not randomly distributed along this chromosomal target. The insertions occur in 22 different "clusters"; in...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Kleckner N,Steele DA,Reichardt K,Botstein D

    更新日期:1979-08-01 00:00:00

  • Different Frequency in the Recovery of Crossover Products from Male and Female Gametes of Plants Hypoploid for B-a Translocations in Maize.

    abstract::The percentage of crossovers is consistently higher in plants hypoploid for six B-A translocations when crossed as males than when crossed as females; in most instances, this excess of male crossing over exceeds that found in control crosses (involving normal chromosomes). Thus, there seems to be something about the h...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Robertson DS

    更新日期:1984-05-01 00:00:00

  • Membrane organization and cell fusion during mating in fission yeast requires multipass membrane protein Prm1.

    abstract::The involvement of Schizosaccharomyces pombe prm1(+) in cell fusion during mating and its relationship with other genes required for this process have been addressed. S. pombe prm1Δ mutant exhibits an almost complete blockade in cell fusion and an abnormal distribution of the plasma membrane and cell wall in the area ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.113.159558

    authors: Curto MÁ,Sharifmoghadam MR,Calpena E,De León N,Hoya M,Doncel C,Leatherwood J,Valdivieso MH

    更新日期:2014-04-01 00:00:00

  • Action of repeat-induced point mutation on both strands of a duplex and on tandem duplications of various sizes in Neurospora.

    abstract::In Neurospora crassa, DNA sequence duplications are detected and altered efficiently during the sexual cycle by a process known as RIP (repeat-induced point mutation). Affected sequences are subjected to multiple GC-to-AT mutations. To explore the pattern in which base changes are laid down by RIP we examined two sets...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Watters MK,Randall TA,Margolin BS,Selker EU,Stadler DR

    更新日期:1999-10-01 00:00:00