Proteome mapping of human skim milk proteins in term and preterm milk.

Abstract:

:The abundant proteins in human milk have been well characterized and are known to provide nutritional, protective, and developmental advantages to both term and preterm infants. However, relatively little is known about the expression of the low abundance proteins that are present in human milk because of the technical difficulties associated with their detection. We used a combination of electrophoretic techniques, ProteoMiner treatment, and two-dimensional liquid chromatography to examine the proteome of human skim milk expressed between 7 and 28 days postpartum by healthy term mothers and identified 415 in a pooled milk sample. Of these, 261 were found in human skim milk for the first time, greatly expanding our understanding of the human skim milk proteome. The majority of the proteins identified were involved in either the immune response (24%) or in cellular (28%) or protein (16%) metabolism. We also used iTRAQ analysis to examine the effects of premature delivery on milk protein composition. Differences in protein expression between pooled milk from mothers delivering at term (38-41 weeks gestation) and preterm (28-32 weeks gestation) were investigated, with 55 proteins found to be differentially expressed with at least 90% confidence. Twenty-eight proteins were present at higher levels in preterm milk, and 27 were present at higher levels in term milk.

journal_name

J Proteome Res

authors

Molinari CE,Casadio YS,Hartmann BT,Livk A,Bringans S,Arthur PG,Hartmann PE

doi

10.1021/pr2008797

subject

Has Abstract

pub_date

2012-03-02 00:00:00

pages

1696-714

issue

3

eissn

1535-3893

issn

1535-3907

journal_volume

11

pub_type

杂志文章
  • A Shotgun Proteomic Approach Reveals That Fe Deficiency Causes Marked Changes in the Protein Profiles of Plasma Membrane and Detergent-Resistant Microdomain Preparations from Beta vulgaris Roots.

    abstract::In the present study we have used label-free shotgun proteomic analysis to examine the effects of Fe deficiency on the protein profiles of highly pure sugar beet root plasma membrane (PM) preparations and detergent-resistant membranes (DRMs), the latter as an approach to study microdomains. Altogether, 545 proteins we...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.6b00026

    authors: Gutierrez-Carbonell E,Takahashi D,Lüthje S,González-Reyes JA,Mongrand S,Contreras-Moreira B,Abadía A,Uemura M,Abadía J,López-Millán AF

    更新日期:2016-08-05 00:00:00

  • Large-Scale Identification of N-Glycan Glycoproteins Carrying Lewis x and Site-Specific N-Glycan Alterations in Fut9 Knockout Mice.

    abstract::The Lewis x (Le(x)) structure (Galβ1-4(Fucα1-3)GlcNAc-R) is a carbohydrate epitope comprising the stage-specific embryonic antigen-1 (SSEA-1) and CD15, and it is synthesized by α1,3-fucosyltransferase 9 (Fut9). Fut9 is expressed specifically in the stomach, kidney, brain, and in leukocytes, suggesting a specific funct...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.5b00178

    authors: Noro E,Togayachi A,Sato T,Tomioka A,Fujita M,Sukegawa M,Suzuki N,Kaji H,Narimatsu H

    更新日期:2015-09-04 00:00:00

  • Identification of the amyloid β-protein precursor and cystatin C as novel epidermal growth factor receptor regulated secretory proteins in nasopharyngeal carcinoma by proteomics.

    abstract::The epidermal growth factor receptor (EGFR) is usually overexpressed in nasopharyngeal carcinoma (NPC) and is associated with pathogenesis of NPC. However, while EGFR-modulated intracellular proteins have been extensively studied, little is known concerning their extracellular counterparts. To identify EGFR-regulated ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr100663p

    authors: Tang CE,Guan YJ,Yi B,Li XH,Liang K,Zou HY,Yi H,Li MY,Zhang PF,Li C,Peng F,Chen ZC,Yao KT,Xiao ZQ

    更新日期:2010-12-03 00:00:00

  • A comparative proteomic analysis of human and rat embryonic cerebrospinal fluid.

    abstract::During vertebrate central nervous system development, the apical neuroepithelium is bathed with embryonic Cerebrospinal Fluid (e-CSF) which plays regulatory roles in cortical cell proliferation and maintenance. Here, we report the first proteomic analysis of human e-CSF and compare it to an extensive proteomic analysi...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr070247w

    authors: Zappaterra MD,Lisgo SN,Lindsay S,Gygi SP,Walsh CA,Ballif BA

    更新日期:2007-09-01 00:00:00

  • A sulfated, phosphorylated 7 kDa secreted peptide characterized by direct analysis of cell culture media.

    abstract::An unusual sulfotyrosine-, phosphoserine-containing motif was mapped on a differentially post-translationally modified 60 residue antimicrobial neuroendocrine peptide called chrombacin. The study was performed by high resolution FT MS using complementary fragmentation techniques. The peptide was analyzed at low levels...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr7006686

    authors: Taylor SW,Sun C,Hsieh A,Andon NL,Ghosh SS

    更新日期:2008-02-01 00:00:00

  • Beyond linker histones and high mobility group proteins: global profiling of perchloric acid soluble proteins.

    abstract::Extraction with HClO(4) provides an easy method for efficient enrichment of both histone H1 and HMG proteins from a variety of tissues. Usually, the histone and the HMG proteins are the most abundant components of the extracts, however, other proteins have frequently been observed but only seldom studied in more detai...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr050415p

    authors: Zougman A,Wiśniewski JR

    更新日期:2006-04-01 00:00:00

  • Francisella tularensis LVS surface and membrane proteins as targets of effective post-exposure immunization for tularemia.

    abstract::Francisella tularensis causes disease (tularemia) in a large number of mammals, including man. We previously demonstrated enhanced efficacy of conventional antibiotic therapy for tularemia by postexposure passive transfer of immune sera developed against a F. tularensis LVS membrane protein fraction (MPF). However, th...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr500628k

    authors: Chandler JC,Sutherland MD,Harton MR,Molins CR,Anderson RV,Heaslip DG,Bosio CM,Belisle JT

    更新日期:2015-02-06 00:00:00

  • Sensitive and Accurate Quantitation of Phosphopeptides Using TMT Isobaric Labeling Technique.

    abstract::Phosphorylation is an essential post-translational modification for regulating protein function and cellular signal transduction. Mass spectrometry (MS) combined with isobaric tandem mass tags (TMTs) has become a powerful platform for simultaneous, large-scale phospho-proteome site identification and quantitation. To ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.7b00610

    authors: Jiang X,Bomgarden R,Brown J,Drew DL,Robitaille AM,Viner R,Huhmer AR

    更新日期:2017-11-03 00:00:00

  • Mass spectrometry characterization of species-specific peptides from arginine kinase for the identification of commercially relevant shrimp species.

    abstract::The identification of commercial shrimp species is a relevant issue to ensure correct labeling, maintain consumer confidence and enhance the knowledge of the captured species, benefiting both, fisheries and manufacturers. A proteomic approach, based on 2DE, tryptic in-gel digestion, MALDI-TOF MS, and ESI-MS/MS analyse...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr900663d

    authors: Ortea I,Cañas B,Gallardo JM

    更新日期:2009-11-01 00:00:00

  • Plasma metabonomics as a novel diagnostic approach for major depressive disorder.

    abstract::Major depressive disorder (MDD) is a socially detrimental psychiatric disorder, contributing to increased healthcare expenditures and suicide rates. However, no empirical laboratory-based tests are available to support the diagnosis of MDD. In this study, a NMR-based plasma metabonomic method for the diagnosis of MDD ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr2010082

    authors: Zheng P,Gao HC,Li Q,Shao WH,Zhang ML,Cheng K,Yang DY,Fan SH,Chen L,Fang L,Xie P

    更新日期:2012-03-02 00:00:00

  • Qualitative and quantitative proteomic profiling of cripto(-/-) embryonic stem cells by means of accurate mass LC-MS analysis.

    abstract::Cripto is one of the key regulators of embryonic stem cells (ESCs) differentiation into cardiomyocites vs neuronal fate. Cripto(-/-) murine ESCs have been utilized to investigate the molecular mechanisms underlying early events of mammalian lineage differentiation. 2D/LC-MS/MS and a label-free LC-MS approaches were us...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr800485c

    authors: Chambery A,Vissers JP,Langridge JI,Lonardo E,Minchiotti G,Ruvo M,Parente A

    更新日期:2009-02-01 00:00:00

  • The construction of a bioactive peptide database in Metazoa.

    abstract::Bioactive peptides play critical roles in regulating most biological processes in animals, and have considerable biological, medical and industrial importance. A number of peptides have been discovered usually based on their biological activities in vitro or based on their sequence similarities in silico. Through sear...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr800037n

    authors: Liu F,Baggerman G,Schoofs L,Wets G

    更新日期:2008-09-01 00:00:00

  • An automated platform for analysis of phosphoproteomic datasets: application to kidney collecting duct phosphoproteins.

    abstract::Large-scale phosphoproteomic analysis employing liquid chromatography-tandem mass spectrometry (LC-MS/MS) often requires a significant amount of manual manipulation of phosphopeptide datasets in the post-acquisition phase. To assist in this process, we have created software, PhosphoPIC (PhosphoPeptide Identification a...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr0701153

    authors: Hoffert JD,Wang G,Pisitkun T,Shen RF,Knepper MA

    更新日期:2007-09-01 00:00:00

  • Dynamic changes of the Caenorhabditis elegans proteome during ontogenesis assessed by quantitative analysis with 15N metabolic labeling.

    abstract::The development of the nematode Caenorhabditis elegans is a highly dynamic process. Although various studies have assessed global transcriptome changes, information on the dynamics of the proteome during ontogenesis is not available. We metabolically labeled C. elegans by using ¹⁵N ammonium chloride as a precursor in ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr300385v

    authors: Geillinger KE,Kuhlmann K,Eisenacher M,Meyer HE,Daniel H,Spanier B

    更新日期:2012-09-07 00:00:00

  • IDPQuantify: combining precursor intensity with spectral counts for protein and peptide quantification.

    abstract::Differentiating and quantifying protein differences in complex samples produces significant challenges in sensitivity and specificity. Label-free quantification can draw from two different information sources: precursor intensities and spectral counts. Intensities are accurate for calculating protein relative abundanc...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr400438q

    authors: Chen YY,Chambers MC,Li M,Ham AJ,Turner JL,Zhang B,Tabb DL

    更新日期:2013-09-06 00:00:00

  • Improved Integrated Whole Proteomic and Phosphoproteomic Profiles of Severe Acute Pancreatitis.

    abstract::Severe acute pancreatitis (SAP) is caused by complicated biological factors, and revealing its complex pathogenesis by single-target analysis is difficult. Systematic studies have developed slowly because extraction of degradable pancreatic proteins exposed to multiple proteases is challenging. We present integrated w...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.0c00229

    authors: Wang C,Zhang Y,Tan J,Chen B,Sun L

    更新日期:2020-06-05 00:00:00

  • Intrinsic disorder in nuclear hormone receptors.

    abstract::Many proteins possess intrinsic disorder (ID) and lack a rigid three-dimensional structure in at least part of their sequence. ID has been hypothesized to influence protein-protein and protein-ligand interactions. We calculated ID for nearly 400 vertebrate and invertebrate members of the biomedically important nuclear...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr8003024

    authors: Krasowski MD,Reschly EJ,Ekins S

    更新日期:2008-10-01 00:00:00

  • NMR-based metabolomic analysis of the molecular pathogenesis of therapy-related myelodysplasia/acute myeloid leukemia.

    abstract::Hematopoietic stem cell transplantation is the oldest and most successful form of stem cell therapy. High dose therapy (HDT) followed by hematopoietic stem cell transplantation allows physicians to administer increased amounts of chemotherapy and/or radiation while minimizing negative side effects such as damage to bl...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr200200y

    authors: Cano KE,Li L,Bhatia S,Bhatia R,Forman SJ,Chen Y

    更新日期:2011-06-03 00:00:00

  • Characterization of post-translational modifications of the linker histones H1 and H5 from chicken erythrocytes using mass spectrometry.

    abstract::Histone linker proteins H1 and H5 were purified from chicken erythrocyte cell nuclei under nondenaturing conditions. The purified linker histones were analyzed using in-solution enzymatic digestions followed by nanoflow reverse-phase high-performance liquid chromatography tandem mass spectrometry. We have identified a...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr800260a

    authors: Snijders AP,Pongdam S,Lambert SJ,Wood CM,Baldwin JP,Dickman MJ

    更新日期:2008-10-01 00:00:00

  • Circulating Lamin B1 (LMNB1) biomarker detects early stages of liver cancer in patients.

    abstract::Hepatocellular carcinoma (HCC) is a major liver malignancy possessing a high mortality rate and is particularly prevalent in China and Asia. While surgery is the most effective treatment for liver tumor, about 80% of HCC patients are inoperable at presentation and die early due to late diagnosis. For early cancer dete...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr9002118

    authors: Sun S,Xu MZ,Poon RT,Day PJ,Luk JM

    更新日期:2010-01-01 00:00:00

  • Glutaredoxin Deletion Shortens Chronological Life Span in Saccharomyces cerevisiae via ROS-Mediated Ras/PKA Activation.

    abstract::Glutaredoxins (GRXs), small redox proteins that use reduced glutathione as an electron donor, are key components of the cellular antioxidant system. In this study, we used Saccharomyces cerevisiae as a model system to investigate the effects of GRX deletion on yeast chronological life span (CLS). Deletion of either Gr...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.8b00012

    authors: Liu Y,Yang F,Li S,Dai J,Deng H

    更新日期:2018-07-06 00:00:00

  • Electron transfer dissociation of iTRAQ labeled peptide ions.

    abstract::Triply and doubly charged iTRAQ ( isobaric tagging for relative and absolute quantitation) labeled peptide cations from a tryptic peptide mixture of bovine carbonic anhydrase II were subjected to electron transfer ion/ion reactions to investigate the effect of charge bearing modifications associated with iTRAQ on the ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr8001113

    authors: Han H,Pappin DJ,Ross PL,McLuckey SA

    更新日期:2008-09-01 00:00:00

  • Quantitative mass spectrometry-based proteomics reveals the dynamic range of primary mouse astrocyte protein secretion.

    abstract::Growing appreciation for astrocytes as active participants in nervous system development, neurovascular metabolic coupling, and neurological disease progression has stimulated recent investigation into specific astrocyte-secreted proteins that may mediate these functions. The current work utilized SILAC-generated isot...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr100134n

    authors: Greco TM,Seeholzer SH,Mak A,Spruce L,Ischiropoulos H

    更新日期:2010-05-07 00:00:00

  • Novel Mechanistic Insights into Bacterial Fluoroquinolone Resistance.

    abstract::Advancements in studies on the evolutionary mechanisms underlying bacterial antibiotic resistance are unclear. This study aimed to investigate the evolutionary mechanism underlying bacterial antibiotic resistance using isobaric tags for relative and absolute quantitation-based quantitative proteomics along with functi...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.9b00410

    authors: Du GF,Zheng YD,Chen J,He QY,Sun X

    更新日期:2019-11-01 00:00:00

  • Pleural effusion lipoproteins measured by NMR spectroscopy for diagnosis of exudative pleural effusions: a novel tool for pore-size estimation.

    abstract::High-resolution proton nuclear magnetic resonance (NMR) spectrometry of biofluids has been increasingly used in laboratory diagnosis of various diseases. In this study, we extended the use of (1)H NMR spectroscopy for laboratory diagnosis of exudative pleural effusions using pleural fluids. We compared this new NMR-ba...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr5004856

    authors: Lam CW,Law CY

    更新日期:2014-09-05 00:00:00

  • Venom Peptide Repertoire of the European Myrmicine Ant Manica rubida: Identification of Insecticidal Toxins.

    abstract::Using an integrated transcriptomic and proteomic approach, we characterized the venom peptidome of the European red ant, Manica rubida. We identified 13 "myrmicitoxins" that share sequence similarities with previously identified ant venom peptides, one of them being identified as an EGF-like toxin likely resulting fro...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.0c00048

    authors: Touchard A,Aili SR,Téné N,Barassé V,Klopp C,Dejean A,Kini RM,Mrinalini,Coquet L,Jouenne T,Lefranc B,Leprince J,Escoubas P,Nicholson GM,Treilhou M,Bonnafé E

    更新日期:2020-04-03 00:00:00

  • Ultra-Performance Liquid Chromatography-High-Resolution Mass Spectrometry and Direct Infusion-High-Resolution Mass Spectrometry for Combined Exploratory and Targeted Metabolic Profiling of Human Urine.

    abstract::The application of metabolic phenotyping to epidemiological studies involving thousands of biofluid samples presents a challenge for the selection of analytical platforms that meet the requirements of high-throughput precision analysis and cost-effectiveness. Here direct infusion-nanoelectrospray (DI-nESI) was compare...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.8b00413

    authors: Chekmeneva E,Dos Santos Correia G,Gómez-Romero M,Stamler J,Chan Q,Elliott P,Nicholson JK,Holmes E

    更新日期:2018-10-05 00:00:00

  • Global metabolite profiling of human colorectal cancer xenografts in mice using HPLC-MS/MS.

    abstract::Reversed-phase gradient LC-MS was used to perform untargeted metabonomic analysis on extracts of human colorectal cancer (CRC) cell lines (COLO 205, HT-29, HCT 116 and SW620) subcutaneously implanted into age-matched athymic nude male mice to study small molecule metabolic profiles and examine possible correlations wi...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr400260h

    authors: Loftus NJ,Lai L,Wilkinson RW,Odedra R,Wilson ID,Barnes AJ

    更新日期:2013-06-07 00:00:00

  • MPK4 Phosphorylation Dynamics and Interacting Proteins in Plant Immunity.

    abstract::Arabidopsis MAP kinase 4 (MPK4) has been proposed to be a negative player in plant immunity, and it is also activated by pathogen-associated molecular patterns (PAMPs), such as flg22. The molecular mechanisms by which MPK4 is activated and regulates plant defense remain elusive. In this study, we investigated Arabidop...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.8b00345

    authors: Zhang T,Schneider JD,Lin C,Geng S,Ma T,Lawrence SR,Dufresne CP,Harmon AC,Chen S

    更新日期:2019-03-01 00:00:00

  • N-linked glycan structures of the human Fcγ receptors produced in NS0 cells.

    abstract::Immune recognition of nonself is coordinated through complex mechanisms involving both innate and adaptive responses. Circulating antibodies communicate with effector cells of the innate immune system through surface receptors known as Fcγ receptors (FcγRs). The FcγRs are single-pass transmembrane glycoproteins respon...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr400344h

    authors: Cosgrave EF,Struwe WB,Hayes JM,Harvey DJ,Wormald MR,Rudd PM

    更新日期:2013-08-02 00:00:00