MPK4 Phosphorylation Dynamics and Interacting Proteins in Plant Immunity.

Abstract:

:Arabidopsis MAP kinase 4 (MPK4) has been proposed to be a negative player in plant immunity, and it is also activated by pathogen-associated molecular patterns (PAMPs), such as flg22. The molecular mechanisms by which MPK4 is activated and regulates plant defense remain elusive. In this study, we investigated Arabidopsis defense against a bacterial pathogen Pseudomonas syringae pv tomato ( Pst) DC3000 when Brassica napus MPK4 ( BnMPK4) is overexpressed. We showed an increase in pathogen resistance and suppression of jasmonic acid (JA) signaling in the BnMPK4 overexpressing (OE) plants. We also showed that the OE plants have increased sensitivity to flg22-triggered reactive oxygen species (ROS) burst in guard cells, which resulted in enhanced stomatal closure compared to wild-type (WT). During flg22 activation, dynamic phosphorylation events within and outside of the conserved TEY activation loop were observed. To elucidate how BnMPK4 functions during the defense response, we used immunoprecipitation coupled with mass spectrometry (IP-MS) to identify BnMPK4 interacting proteins in the absence and presence of flg22. Quantitative proteomic analysis revealed a shift in the MPK4-associated protein network, providing insight into the molecular functions of MPK4 at the systems level.

journal_name

J Proteome Res

authors

Zhang T,Schneider JD,Lin C,Geng S,Ma T,Lawrence SR,Dufresne CP,Harmon AC,Chen S

doi

10.1021/acs.jproteome.8b00345

subject

Has Abstract

pub_date

2019-03-01 00:00:00

pages

826-840

issue

3

eissn

1535-3893

issn

1535-3907

journal_volume

18

pub_type

杂志文章
  • A sulfated, phosphorylated 7 kDa secreted peptide characterized by direct analysis of cell culture media.

    abstract::An unusual sulfotyrosine-, phosphoserine-containing motif was mapped on a differentially post-translationally modified 60 residue antimicrobial neuroendocrine peptide called chrombacin. The study was performed by high resolution FT MS using complementary fragmentation techniques. The peptide was analyzed at low levels...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr7006686

    authors: Taylor SW,Sun C,Hsieh A,Andon NL,Ghosh SS

    更新日期:2008-02-01 00:00:00

  • Shotgun protein profile of human adipose tissue and its changes in relation to systemic amyloidoses.

    abstract::In systemic amyloidosis, accumulation of misfolded proteins as extracellular amyloid fibrils in tissues causes severe organ dysfunction, but the molecular events of tissue damage related to amyloid deposition are still largely unknown. Through the use of the MudPIT proteomic approach, comprehensive protein profiles of...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr400583h

    authors: Brambilla F,Lavatelli F,Di Silvestre D,Valentini V,Palladini G,Merlini G,Mauri P

    更新日期:2013-12-06 00:00:00

  • iTRAQ-coupled 2D LC-MS/MS analysis on protein profile in vascular smooth muscle cells incubated with S- and R-enantiomers of propranolol: possible role of metabolic enzymes involved in cellular anabolism and antioxidant activity.

    abstract::Propranolol is a nonselective beta-blocker of the beta-adrenergic receptors, and the S-enantiomer is more active compared with the R-enantiomer. Clinically, it has been shown to be effective in hypermetabolic burn patients by decreasing cardiac work, protein catabolism, and lipolysis. While gene expression profiles ha...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr0605926

    authors: Sui J,Tan TL,Zhang J,Ching CB,Chen WN

    更新日期:2007-05-01 00:00:00

  • Purification and identification of O-GlcNAc-modified peptides using phosphate-based alkyne CLICK chemistry in combination with titanium dioxide chromatography and mass spectrometry.

    abstract::A selective method for the enrichment of O-GlcNAcylated peptides using a novel CLICK chemistry reagent is described. Peptides modified by O-GlcNAc were enzymatically labeled with N-azidoacetylgalactosamine. The azide was then reacted with a phospho-alkyne using CLICK chemistry and O-GlcNAcGalNAzPO(4)-containing peptid...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr100565j

    authors: Parker BL,Gupta P,Cordwell SJ,Larsen MR,Palmisano G

    更新日期:2011-04-01 00:00:00

  • Alterations of Brain Quantitative Proteomics Profiling Revealed the Molecular Mechanisms of Diosgenin against Cerebral Ischemia Reperfusion Effects.

    abstract::Diosgenin (DIO), the starting material for the synthesis of steroidal anti-inflammatory drugs in the pharmaceutical industry, has been previously demonstrated to display pharmaceutical effects against cerebral ischemic reperfusion (I/R). However, the alterations of brain proteome profiles underlying this treatment rem...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.9b00667

    authors: Zhang X,Wang X,Khurm M,Zhan G,Zhang H,Ito Y,Guo Z

    更新日期:2020-03-06 00:00:00

  • Identification of hypoxia-regulated proteins using MALDI-mass spectrometry imaging combined with quantitative proteomics.

    abstract::Hypoxia is present in most solid tumors and is clinically correlated with increased metastasis and poor patient survival. While studies have demonstrated the role of hypoxia and hypoxia-regulated proteins in cancer progression, no attempts have been made to identify hypoxia-regulated proteins using quantitative proteo...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr401056c

    authors: Djidja MC,Chang J,Hadjiprocopis A,Schmich F,Sinclair J,Mršnik M,Schoof EM,Barker HE,Linding R,Jørgensen C,Erler JT

    更新日期:2014-05-02 00:00:00

  • A new fast method for nanoLC-MALDI-TOF/TOF-MS analysis using monolithic columns for peptide preconcentration and separation in proteomic studies.

    abstract::A new fast method for identification and characterization of proteolytic digests of proteins by monolithic liquid chromatography coupled with mass spectrometry has been developed. The advantages of the monolithic columns are a high-pressure stability and low back pressure resulting in higher flow rates for capillary o...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr060406w

    authors: Marcus K,Schäfer H,Klaus S,Bunse C,Swart R,Meyer HE

    更新日期:2007-02-01 00:00:00

  • Pathway-based biomarker search by high-throughput proteomics profiling of secretomes.

    abstract::An efficient means for the identification of prognostic and predictive biomarkers is essential in today's cancer management. A new approach toward biomarker discovery has therefore been proposed, where pathways instead of individual proteins would be monitored and targeted. Recently, the 'secretome', a biological flui...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr8008572

    authors: Lawlor K,Nazarian A,Lacomis L,Tempst P,Villanueva J

    更新日期:2009-03-01 00:00:00

  • Quantitative Proteomic Approaches for Analysis of Protein S-Nitrosylation.

    abstract::S-Nitrosylation is a redox-based post-translational modification of a protein in response to nitric oxide (NO) signaling, and it participates in a variety of processes in diverse biological systems. The significance of this type of protein modification in health and diseases is increasingly recognized. In the central ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章,评审

    doi:10.1021/acs.jproteome.5b00857

    authors: Qu Z,Greenlief CM,Gu Z

    更新日期:2016-01-04 00:00:00

  • In-gel isoelectric focusing of peptides as a tool for improved protein identification.

    abstract::In the analysis of proteins in complex samples, pre-fractionation is imperative to obtain the necessary depth in the number of reliable protein identifications by mass spectrometry. Here we explore isoelectric focusing of peptides (peptide IEF) as an effective fractionation step that at the same time provides the adde...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr0601180

    authors: Krijgsveld J,Gauci S,Dormeyer W,Heck AJ

    更新日期:2006-07-01 00:00:00

  • Evaluation of NCI-7 Cell Line Panel as a Reference Material for Clinical Proteomics.

    abstract::Reference materials are vital to benchmarking the reproducibility of clinical tests and essential for monitoring laboratory performance for clinical proteomics. The reference material utilized for mass spectrometric analysis of the human proteome would ideally contain enough proteins to be suitably representative of t...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.8b00165

    authors: Clark DJ,Hu Y,Bocik W,Chen L,Schnaubelt M,Roberts R,Shah P,Whiteley G,Zhang H

    更新日期:2018-06-01 00:00:00

  • Proteomics, genomics, and pathway analyses of Escherichia coli and Staphylococcus aureus infected milk whey reveal molecular pathways and networks involved in mastitis.

    abstract::Gram-negative and -positive bacteria elicit different response patterns by the host. The proteomic profiles of milk whey samples from cows naturally infected with Escherichia coli or Staphyloccocus aureus as compared to whey from healthy cows were determined by one-dimensional, liquid chromatography-tandem mass spectr...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr100336e

    authors: Ibeagha-Awemu EM,Ibeagha AE,Messier S,Zhao X

    更新日期:2010-09-03 00:00:00

  • Pleural effusion lipoproteins measured by NMR spectroscopy for diagnosis of exudative pleural effusions: a novel tool for pore-size estimation.

    abstract::High-resolution proton nuclear magnetic resonance (NMR) spectrometry of biofluids has been increasingly used in laboratory diagnosis of various diseases. In this study, we extended the use of (1)H NMR spectroscopy for laboratory diagnosis of exudative pleural effusions using pleural fluids. We compared this new NMR-ba...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr5004856

    authors: Lam CW,Law CY

    更新日期:2014-09-05 00:00:00

  • Proteomic signatures uncover hydrogen peroxide and nitric oxide cross-talk signaling network in citrus plants.

    abstract::Hydrogen peroxide (H(2)O(2)) and nitric oxide ((•)NO) elicit numerous processes in plants. However, our knowledge of H(2)O(2) and (•)NO-responsive proteins is limited. The present study aimed to identify proteins whose accumulation levels were regulated by these signaling molecules in citrus leaves. To address this qu...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr100782h

    authors: Tanou G,Job C,Belghazi M,Molassiotis A,Diamantidis G,Job D

    更新日期:2010-11-05 00:00:00

  • Heterogeneous nuclear ribonucleoprotein A1 is identified as a potential biomarker for colorectal cancer based on differential proteomics technology.

    abstract::Colorectal cancer (CRC) is the third most common cancer worldwide and has poor prognosis. To identify the proteins involved in colorectal carcinogenesis, we employed 2-DE and MALDI-TOF/TOF-based proteomics approach to study the differentially expressed proteins in tumor and adjacent nontumor tissue samples. Samples fr...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr900365e

    authors: Ma YL,Peng JY,Zhang P,Huang L,Liu WJ,Shen TY,Chen HQ,Zhou YK,Zhang M,Chu ZX,Qin HL

    更新日期:2009-10-01 00:00:00

  • Impact of Amidination on Peptide Fragmentation and Identification in Shotgun Proteomics.

    abstract::Peptide amidination labeling using S-methyl thioacetimidate (SMTA) is investigated in an attempt to increase the number and types of peptides that can be detected in a bottom-up proteomics experiment. This derivatization method affects the basicity of lysine residues and is shown here to significantly impact the idios...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.6b00468

    authors: Li S,Dabir A,Misal SA,Tang H,Radivojac P,Reilly JP

    更新日期:2016-10-07 00:00:00

  • Human Metabolome Changes after a Single Dose of 3,4-Methylenedioxymethamphetamine (MDMA) with Special Focus on Steroid Metabolism and Inflammation Processes.

    abstract::The intake of 3,4-methylenedioxymethamphetamine (MDMA) is known to increase several endogenous substances involved in steroid and inflammation pathways. Untargeted metabolomics screening approaches can determine biochemical changes after drug exposure and can reveal new pathways, which might be involved in the pharmac...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.8b00438

    authors: Boxler MI,Streun GL,Liechti ME,Schmid Y,Kraemer T,Steuer AE

    更新日期:2018-08-03 00:00:00

  • Investigating the impact of elevated levels of ozone on tropical wheat using integrated phenotypical, physiological, biochemical, and proteomics approaches.

    abstract::Ozone (O3), a potent air pollutant and a significant greenhouse gas, has been recognized as a major component of global climate change. However, current increasing trends in its background level are projecting a more severe threat to natural and cultivated plants in the near future. The present study has been designed...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr1002824

    authors: Sarkar A,Rakwal R,Bhushan Agrawal S,Shibato J,Ogawa Y,Yoshida Y,Kumar Agrawal G,Agrawal M

    更新日期:2010-09-03 00:00:00

  • Label-Free (XIC) Quantification of Venom Procoagulant and Neurotoxin Expression in Related Australian Elapid Snakes Gives Insight into Venom Toxicity Evolution.

    abstract::This study demonstrates a direct role of venom protein expression alteration in the evolution of snake venom toxicity. Avian skeletal muscle contractile response to exogenously administered acetylcholine is completely inhibited upon exposure to South Australian and largely preserved following exposure to Queensland ea...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.5b00764

    authors: Skejic J,Steer DL,Dunstan N,Hodgson WC

    更新日期:2015-11-06 00:00:00

  • Comparative analysis of human SRC-family kinase substrate specificity in vitro.

    abstract::Src family kinases (SFKs) are the earliest known family of tyrosine kinases and are widely thought to play essential roles in cellular signal transduction. Although numerous functional analyses have been performed, no study has analyzed the specificity of all SFKs on an equal platform. To gain a better understanding o...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr100773t

    authors: Takeda H,Kawamura Y,Miura A,Mori M,Wakamatsu A,Yamamoto J,Isogai T,Matsumoto M,Nakayama KI,Natsume T,Nomura N,Goshima N

    更新日期:2010-11-05 00:00:00

  • Identification of Api88 Binding Partners in Escherichia coli Using a Photoaffinity-Cross-Link Strategy and Label-Free Quantification.

    abstract::Gene-encoded antimicrobial peptides (AMPs) kill bacteria very efficiently by either lytic mechanisms or inhibition of specific bacterial targets. Proline-rich AMPs (PrAMPs), for example, produced in insects and mammals rely on the second mechanism. They bind to the 70 kDa bacterial heat shock protein DnaK and the 60 k...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.5b00283

    authors: Volke D,Krizsan A,Berthold N,Knappe D,Hoffmann R

    更新日期:2015-08-07 00:00:00

  • Citrate boosts the performance of phosphopeptide analysis by UPLC-ESI-MS/MS.

    abstract::Incomplete recovery from the LC column is identified as a major cause for poor detection efficiency of phosphopeptides by LC-MS/MS. It is proposed that metal ions adsorbed on the stationary phase interact with the phosphate group of phosphopeptides via an ion-pairing mechanism related to IMAC (IMAC: immobilized metal ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr800304n

    authors: Winter D,Seidler J,Ziv Y,Shiloh Y,Lehmann WD

    更新日期:2009-01-01 00:00:00

  • Marked Differences in the Submandibular Salivary Proteome between Sardinian Alcohol-Preferring and Sardinian Alcohol-Non Preferring Rats Revealed by an Integrated Top-Down-Bottom-Up Proteomic Platform.

    abstract::Sardinian alcohol-preferring (sP) and Sardinian alcohol-non preferring (sNP) rats have been selectively bred for opposite alcohol preference and consumption. Aiming to verify possible differences at the proteomics level between sP and sNP rats, we investigated the salivary proteome by a a liquid chromatography-mass sp...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.7b00632

    authors: Cabras T,D'Alessandro A,Serrao S,Isola R,Iavarone F,Vincenzoni F,Colombo G,Ekström J,Messana I,Castagnola M

    更新日期:2018-01-05 00:00:00

  • An automated platform for analysis of phosphoproteomic datasets: application to kidney collecting duct phosphoproteins.

    abstract::Large-scale phosphoproteomic analysis employing liquid chromatography-tandem mass spectrometry (LC-MS/MS) often requires a significant amount of manual manipulation of phosphopeptide datasets in the post-acquisition phase. To assist in this process, we have created software, PhosphoPIC (PhosphoPeptide Identification a...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr0701153

    authors: Hoffert JD,Wang G,Pisitkun T,Shen RF,Knepper MA

    更新日期:2007-09-01 00:00:00

  • Relative Abundance of apoE and Aβ1-42 Associated with Abnormal Prion Protein Differs between Creutzfeldt-Jakob Disease Subtypes.

    abstract::Aggregated and protease-resistant mammalian prion protein (PrPSc) is the primary protein component of infectious prions. Enriched PrPSc preparations are often used to study the mechanisms that underly prion disease. However, most enrichment procedures are relatively nonspecific and tend to yield significant amounts of...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.6b00633

    authors: Moore RA,Choi YP,Head MW,Ironside JW,Faris R,Ritchie DL,Zanusso G,Priola SA

    更新日期:2016-12-02 00:00:00

  • Protein profilings in mouse liver regeneration after partial hepatectomy using iTRAQ technology.

    abstract::Liver is unique in its capability to regenerate after an injury. Liver regeneration after a 2/3 partial hepatectomy served as a classical model and is adopted frequently to study the mechanism of liver regeneration. In the present study, semiquantitative analysis of protein expression in mouse liver regeneration follo...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr800696m

    authors: Hsieh HC,Chen YT,Li JM,Chou TY,Chang MF,Huang SC,Tseng TL,Liu CC,Chen SF

    更新日期:2009-02-01 00:00:00

  • In-gel derivatization of proteins for cysteine-specific cleavages and their analysis by mass spectrometry.

    abstract::As a potential tool for proteomics and protein characterization, in-gel cysteine- and arginine-specific cleavage is demonstrated by means of trypsin or endoproteinase Lys-C for six model proteins (lysozyme, alpha-lactalbumin, beta-lactoglobulin, ribonuclease A, albumin, and transferrin), ranging in size from 14 kDa to...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr025568g

    authors: Thevis M,Ogorzalek Loo RR,Loo JA

    更新日期:2003-03-01 00:00:00

  • Thioridazine Alters the Cell-Envelope Permeability of Mycobacterium tuberculosis.

    abstract::The increasing occurrence of multidrug resistant tuberculosis exerts a major burden on treatment of this infectious disease. Thioridazine, previously used as a neuroleptic, is active against extensively drug resistant tuberculosis when added to other second- and third-line antibiotics. By quantitatively studying the p...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.5b01037

    authors: de Keijzer J,Mulder A,de Haas PE,de Ru AH,Heerkens EM,Amaral L,van Soolingen D,van Veelen PA

    更新日期:2016-06-03 00:00:00

  • Introduction of the disulfide proteome: application of a technique for the analysis of plant storage proteins as well as allergens.

    abstract::Redox regulation plays an important role across a broad spectrum of biology. Accumulating evidence suggests that thioredoxin, a widely distributed redox enzyme, participates in the redox control of numerous target proteins, thus, playing a key role as a signaling intermediate that senses the metabolic state or environ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章,评审

    doi:10.1021/pr8003453

    authors: Yano H,Kuroda S

    更新日期:2008-08-01 00:00:00

  • Proteome-driven elucidation of adaptive responses to combined vitamin E and C deficiency in zebrafish.

    abstract::The purpose of this study was to determine the system-wide consequences of deficiencies in two essential micronutrients, vitamins E and C, on the proteome using zebrafish (Danio rerio) as one of the few vertebrate models that similar to humans cannot synthesize vitamin C. We describe a label-free proteomics workflow t...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr401108d

    authors: Motorykin I,Traber MG,Tanguay RL,Maier CS

    更新日期:2014-03-07 00:00:00