Label-Free (XIC) Quantification of Venom Procoagulant and Neurotoxin Expression in Related Australian Elapid Snakes Gives Insight into Venom Toxicity Evolution.

Abstract:

:This study demonstrates a direct role of venom protein expression alteration in the evolution of snake venom toxicity. Avian skeletal muscle contractile response to exogenously administered acetylcholine is completely inhibited upon exposure to South Australian and largely preserved following exposure to Queensland eastern brown snake Pseudonaja textilis venom, indicating potent postsynaptic neurotoxicity of the former and lack thereof of the latter venom. Label-free quantitative proteomics reveals extremely large differences in the expression of postsynaptic three-finger α-neurotoxins in these venoms, explaining the difference in the muscle contractile response and suggesting that the type of toxicity induced by venom can be modified by altered expression of venom proteins. Furthermore, the onset of neuromuscular paralysis in the rat phrenic nerve-diaphragm preparation occurs sooner upon exposure to the venom (10 μg/mL) with high expression of α-neurotoxins than the venoms containing predominately presynaptic β-neurotoxins. The study also finds that the onset of rat plasma coagulation is faster following exposure to the venoms with higher expression of venom prothrombin activator subunits. This is the first quantitative proteomic study that uses extracted ion chromatogram peak areas (MS1 XIC) of distinct homologous tryptic peptides to directly show the differences in the expression of venom proteins.

journal_name

J Proteome Res

authors

Skejic J,Steer DL,Dunstan N,Hodgson WC

doi

10.1021/acs.jproteome.5b00764

subject

Has Abstract

pub_date

2015-11-06 00:00:00

pages

4896-906

issue

11

eissn

1535-3893

issn

1535-3907

journal_volume

14

pub_type

杂志文章
  • Proteome profile of cytosolic component of zebrafish liver generated by LC-ESI MS/MS combined with trypsin digestion and microwave-assisted acid hydrolysis.

    abstract::The zebrafish genome has recently been sequenced and annotated allowing for high-throughput proteomic analysis. Here, we report for the first time a proteomic subset of zebrafish liver, an important organ for metabolizing toxins. Using a newly developed analytical procedure, we have identified 1204 proteins from the c...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr060367o

    authors: Wang N,Mackenzie L,De Souza AG,Zhong H,Goss G,Li L

    更新日期:2007-01-01 00:00:00

  • Relative Abundance of apoE and Aβ1-42 Associated with Abnormal Prion Protein Differs between Creutzfeldt-Jakob Disease Subtypes.

    abstract::Aggregated and protease-resistant mammalian prion protein (PrPSc) is the primary protein component of infectious prions. Enriched PrPSc preparations are often used to study the mechanisms that underly prion disease. However, most enrichment procedures are relatively nonspecific and tend to yield significant amounts of...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.6b00633

    authors: Moore RA,Choi YP,Head MW,Ironside JW,Faris R,Ritchie DL,Zanusso G,Priola SA

    更新日期:2016-12-02 00:00:00

  • Ultra-Performance Liquid Chromatography-High-Resolution Mass Spectrometry and Direct Infusion-High-Resolution Mass Spectrometry for Combined Exploratory and Targeted Metabolic Profiling of Human Urine.

    abstract::The application of metabolic phenotyping to epidemiological studies involving thousands of biofluid samples presents a challenge for the selection of analytical platforms that meet the requirements of high-throughput precision analysis and cost-effectiveness. Here direct infusion-nanoelectrospray (DI-nESI) was compare...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.8b00413

    authors: Chekmeneva E,Dos Santos Correia G,Gómez-Romero M,Stamler J,Chan Q,Elliott P,Nicholson JK,Holmes E

    更新日期:2018-10-05 00:00:00

  • Combined Antibody/Lectin Enrichment Identifies Extensive Changes in the O-GlcNAc Sub-proteome upon Oxidative Stress.

    abstract::O-Linked N-acetyl-β-d-glucosamine (O-GlcNAc) is a dynamic post-translational modification that modifies and regulates over 3000 nuclear, cytoplasmic, and mitochondrial proteins. Upon exposure to stress and injury, cells and tissues increase the O-GlcNAc modification, or O-GlcNAcylation, of numerous proteins promoting ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.6b00369

    authors: Lee A,Miller D,Henry R,Paruchuri VD,O'Meally RN,Boronina T,Cole RN,Zachara NE

    更新日期:2016-12-02 00:00:00

  • Automated querying and identification of novel peptides using MALDI mass spectrometric imaging.

    abstract::MSI is a molecular imaging technique that allows for the generation of topographic 2D maps for various endogenous and some exogenous molecules without prior specification of the molecule. In this paper, we start with the premise that a region of interest (ROI) is given to us based on preselected morphological criteria...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr101159e

    authors: Bruand J,Sistla S,Mériaux C,Dorrestein PC,Gaasterland T,Ghassemian M,Wisztorski M,Fournier I,Salzet M,Macagno E,Bafna V

    更新日期:2011-04-01 00:00:00

  • Vesicle and vesicle-free extracellular proteome of Paracoccidioides brasiliensis: comparative analysis with other pathogenic fungi.

    abstract::Microorganisms release effector molecules that modulate the host machinery enabling survival, replication, and dissemination of a pathogen. Here we characterized the extracellular proteome of Paracoccidioides brasiliensis at its pathogenic yeast phase. Cell-free culture supernatants from the Pb18 isolate, cultivated i...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr200872s

    authors: Vallejo MC,Nakayasu ES,Matsuo AL,Sobreira TJ,Longo LV,Ganiko L,Almeida IC,Puccia R

    更新日期:2012-03-02 00:00:00

  • Mass spectrometry characterization of species-specific peptides from arginine kinase for the identification of commercially relevant shrimp species.

    abstract::The identification of commercial shrimp species is a relevant issue to ensure correct labeling, maintain consumer confidence and enhance the knowledge of the captured species, benefiting both, fisheries and manufacturers. A proteomic approach, based on 2DE, tryptic in-gel digestion, MALDI-TOF MS, and ESI-MS/MS analyse...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr900663d

    authors: Ortea I,Cañas B,Gallardo JM

    更新日期:2009-11-01 00:00:00

  • Identification of the amyloid β-protein precursor and cystatin C as novel epidermal growth factor receptor regulated secretory proteins in nasopharyngeal carcinoma by proteomics.

    abstract::The epidermal growth factor receptor (EGFR) is usually overexpressed in nasopharyngeal carcinoma (NPC) and is associated with pathogenesis of NPC. However, while EGFR-modulated intracellular proteins have been extensively studied, little is known concerning their extracellular counterparts. To identify EGFR-regulated ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr100663p

    authors: Tang CE,Guan YJ,Yi B,Li XH,Liang K,Zou HY,Yi H,Li MY,Zhang PF,Li C,Peng F,Chen ZC,Yao KT,Xiao ZQ

    更新日期:2010-12-03 00:00:00

  • Identification of chromatophore membrane protein complexes formed under different nitrogen availability conditions in Rhodospirillum rubrum.

    abstract::The chromatophore membrane of the photosynthetic diazotroph Rhodospirillum rubrum is of vital importance for a number of central processes, including nitrogen fixation. Using a novel amphiphile, we have identified protein complexes present under different nitrogen availability conditions by the use of two-dimensional ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr100838x

    authors: Selao TT,Branca R,Chae PS,Lehtiö J,Gellman SH,Rasmussen SG,Nordlund S,Norén A

    更新日期:2011-06-03 00:00:00

  • Evidence for novel tomato seed allergens: IgE-reactive legumin and vicilin proteins identified by multidimensional protein fractionation-mass spectrometry and in silico epitope modeling.

    abstract::Tomato fruit and seed allergens were detected by IgE-immunoblotting using sera from 18 adult tomato-sensitized patients selected based on a positive history skin prick test (SPT) and specific Immunglobulin (Ig) E-levels. Isolated tomato seed total protein showed high SPT activity comparable or even higher than tomato ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr800186d

    authors: Bässler OY,Weiss J,Wienkoop S,Lehmann K,Scheler C,Dölle S,Schwarz D,Franken P,George E,Worm M,Weckwerth W

    更新日期:2009-03-01 00:00:00

  • Variability in Streptavidin-Sepharose Matrix Quality Can Significantly Affect Proximity-Dependent Biotinylation (BioID) Data.

    abstract::Due to their ease of use and high binding affinity, streptavidin-based purification tools have become widely used for isolating biotinylated compounds from complex mixtures. We and others routinely use streptavidin-sepharose matrices to isolate biotinylated polypeptides generated in proximity-dependent biotinylation a...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.0c00117

    authors: St-Germain JR,Samavarchi Tehrani P,Wong C,Larsen B,Gingras AC,Raught B

    更新日期:2020-08-07 00:00:00

  • Online microwave D-cleavage LC-ESI-MS/MS of intact proteins: site-specific cleavages at aspartic acid residues and disulfide bonds.

    abstract::An online nonenzymatic digestion method utilizing a microwave-heated flow cell and mild acid hydrolysis at aspartic acid (D) for rapid protein identification is described. This methodology, here termed microwave D-cleavage, was tested with proteins ranging in size from 5 kDa (insulin) to 67 kDa (bovine serum albumin) ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr700596e

    authors: Hauser NJ,Basile F

    更新日期:2008-03-01 00:00:00

  • On the development of plasma protein biomarkers.

    abstract::The development of plasma biomarkers has proven to be more challenging than initially anticipated. Many studies have reported lists of candidate proteins rather than validated candidate markers with an assigned performance to a specific clinical objective. Biomarker research necessitates a clear rational framework wit...

    journal_title:Journal of proteome research

    pub_type: 杂志文章,评审

    doi:10.1021/pr1008515

    authors: Surinova S,Schiess R,Hüttenhain R,Cerciello F,Wollscheid B,Aebersold R

    更新日期:2011-01-07 00:00:00

  • The left ventricle proteome differentiates middle-aged and old left ventricles in mice.

    abstract::Middle-aged and old left ventricles (LVs) are structurally and functionally very similar. Compared to a young LV, both show increased wall thickness and increased cavity size, with preserved cardiac function. However, when a stressor such as myocardial infarction occurs, striking differences are revealed between young...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr700685e

    authors: Dai Q,Escobar GP,Hakala KW,Lambert JM,Weintraub ST,Lindsey ML

    更新日期:2008-02-01 00:00:00

  • Quantitative Proteomics Analysis Confirmed Oxidative Metabolism Predominates in Streptomyces coelicolor versus Glycolytic Metabolism in Streptomyces lividans.

    abstract::Recent physiological studies indicated that S. lividans metabolism was mainly glycolytic, whereas S. coelicolor metabolism was mainly oxidative. To determine whether such metabolic characteristics were correlated with consistent proteomics features, a comparative label-free, shotgun proteomics analysis of these strain...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.7b00163

    authors: Millan-Oropeza A,Henry C,Blein-Nicolas M,Aubert-Frambourg A,Moussa F,Bleton J,Virolle MJ

    更新日期:2017-07-07 00:00:00

  • Phosphoproteome study reveals Hsp27 as a novel signaling molecule involved in GDNF-induced neurite outgrowth.

    abstract::Glial-cell-line-derived neurotrophic factor (GDNF) is a most potent survival factor for dopaminergic neurons. In addition, GDNF was also found to promote neurite outgrowth in dopaminergic neurons. However, despite the potential clinical and physiological importance of GDNF, its mechanism of action is unclear. Therefor...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr801052v

    authors: Hong Z,Zhang QY,Liu J,Wang ZQ,Zhang Y,Xiao Q,Lu J,Zhou HY,Chen SD

    更新日期:2009-06-01 00:00:00

  • iTRAQ-coupled 2D LC-MS/MS analysis on protein profile in vascular smooth muscle cells incubated with S- and R-enantiomers of propranolol: possible role of metabolic enzymes involved in cellular anabolism and antioxidant activity.

    abstract::Propranolol is a nonselective beta-blocker of the beta-adrenergic receptors, and the S-enantiomer is more active compared with the R-enantiomer. Clinically, it has been shown to be effective in hypermetabolic burn patients by decreasing cardiac work, protein catabolism, and lipolysis. While gene expression profiles ha...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr0605926

    authors: Sui J,Tan TL,Zhang J,Ching CB,Chen WN

    更新日期:2007-05-01 00:00:00

  • Proteome analysis of silkworm, Bombyx mori, larval gonads: characterization of proteins involved in sexual dimorphism and gametogenesis.

    abstract::Sexual dimorphism is initialed by the components of the sex determination pathway and is most evident in gonads and germ cells. Although striking dimorphic expressions have been detected at the transcriptional level between the silkworm larval testis and the ovary, the sex-dimorphic expressions at the protein level ha...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr300920z

    authors: Chen JE,Li JY,You ZY,Liu LL,Liang JS,Ma YY,Chen M,Zhang HR,Jiang ZD,Zhong BX

    更新日期:2013-06-07 00:00:00

  • Experimental metabonomic model of dietary variation and stress interactions.

    abstract::Stress in the form of moderate periods of maternal separation of newborn rats has been postulated to cause permanent changes in the central nervous system and diseases in later life. It is also considered that dietary supplementation with long chain polyunsaturated fatty acids (LC-PUFAs) can potentially ameliorate the...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr0504182

    authors: Wang Y,Holmes E,Tang H,Lindon JC,Sprenger N,Turini ME,Bergonzelli G,Fay LB,Kochhar S,Nicholson JK

    更新日期:2006-07-01 00:00:00

  • BioNSi: A Discrete Biological Network Simulator Tool.

    abstract::Modeling and simulation of biological networks is an effective and widely used research methodology. The Biological Network Simulator (BioNSi) is a tool for modeling biological networks and simulating their discrete-time dynamics, implemented as a Cytoscape App. BioNSi includes a visual representation of the network t...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.6b00278

    authors: Rubinstein A,Bracha N,Rudner L,Zucker N,Sloin HE,Chor B

    更新日期:2016-08-05 00:00:00

  • Proteomic analysis of hepatitis C virus (HCV) core protein transfection and host regulator PA28γ knockout in HCV pathogenesis: a network-based study.

    abstract::Hepatitis C virus (HCV) causes chronic liver disease worldwide. HCV Core protein (Core) forms the viral capsid and is crucial for HCV pathogenesis and HCV-induced hepatocellular carcinoma, through its interaction with the host factor proteasome activator PA28γ. Here, using BD-PowerBlot high-throughput Western array, w...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr300121a

    authors: Tripathi LP,Kambara H,Moriishi K,Morita E,Abe T,Mori Y,Chen YA,Matsuura Y,Mizuguchi K

    更新日期:2012-07-06 00:00:00

  • Quantitative Proteomic Approaches for Analysis of Protein S-Nitrosylation.

    abstract::S-Nitrosylation is a redox-based post-translational modification of a protein in response to nitric oxide (NO) signaling, and it participates in a variety of processes in diverse biological systems. The significance of this type of protein modification in health and diseases is increasingly recognized. In the central ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章,评审

    doi:10.1021/acs.jproteome.5b00857

    authors: Qu Z,Greenlief CM,Gu Z

    更新日期:2016-01-04 00:00:00

  • Identification of Glycopeptides with Multiple Hydroxylysine O-Glycosylation Sites by Tandem Mass Spectrometry.

    abstract::Glycosylation is one of the most common post-translational modifications in proteins, existing in ~50% of mammalian proteins. Several research groups have demonstrated that mass spectrometry is an efficient technique for glycopeptide identification; however, this problem is still challenging because of the enormous di...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.5b00299

    authors: Zhang Y,Yu CY,Song E,Li SC,Mechref Y,Tang H,Liu X

    更新日期:2015-12-04 00:00:00

  • Probity: a protein identification algorithm with accurate assignment of the statistical significance of the results.

    abstract::An algorithm for protein identification based on mass spectrometric proteolytic peptide mapping and genome database searching is presented. The algorithm ranks database proteins based on direct calculation of the probability of random matching and assigns the statistical significance to each result. We investigate the...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr034048y

    authors: Eriksson J,Fenyö D

    更新日期:2004-01-01 00:00:00

  • Proteomic analysis of human serum by two-dimensional differential gel electrophoresis after depletion of high-abundant proteins.

    abstract::Two-dimensional differential gel electrophoresis (2-D DIGE) was used to analyze human serum following the removal of albumin and five other high-abundant serum proteins. After protein removal, serum was analyzed by SDS-PAGE as a preliminary screen, and significant differences between four high-abundant protein removal...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr049921p

    authors: Chromy BA,Gonzales AD,Perkins J,Choi MW,Corzett MH,Chang BC,Corzett CH,McCutchen-Maloney SL

    更新日期:2004-11-01 00:00:00

  • Phenotyping polyclonal kappa and lambda light chain molecular mass distributions in patient serum using mass spectrometry.

    abstract::We previously described a microLC-ESI-Q-TOF MS method for identifying monoclonal immunoglobulins in serum and then tracking them over time using their accurate molecular mass. Here we demonstrate how the same methodology can be used to identify and characterize polyclonal immunoglobulins in serum. We establish that tw...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr5005967

    authors: Barnidge DR,Dasari S,Ramirez-Alvarado M,Fontan A,Willrich MA,Tschumper RC,Jelinek DF,Snyder MR,Dispenzieri A,Katzmann JA,Murray DL

    更新日期:2014-11-07 00:00:00

  • Comprehensive Spectral Library from the Pathogenic Bacterium Streptococcus pneumoniae with Focus on Phosphoproteins.

    abstract::To understand bacterial reactions to environmental stress or infection-related processes, it is necessary to identify the involved proteins. In mass spectrometry-based proteomics, the method of choice for spectra-to-peptide-match is database search, but in recent times, spectral libraries have come into focus. Here, w...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.9b00615

    authors: Hentschker C,Maaß S,Junker S,Hecker M,Hammerschmidt S,Otto A,Becher D

    更新日期:2020-04-03 00:00:00

  • Identification of Novel N-Glycosylation Sites at Noncanonical Protein Consensus Motifs.

    abstract::N-glycosylation of proteins is well known to occur at asparagine residues that fall within the canonical consensus sequence N-X-S/T but has also been identified at a small number of asparagine residues within N-X-C motifs, including the N491 residue of human serotransferrin. Here we report novel glycosylation sites wi...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.5b00733

    authors: Lowenthal MS,Davis KS,Formolo T,Kilpatrick LE,Phinney KW

    更新日期:2016-07-01 00:00:00

  • Mapping post-translational modifications of mammalian testicular specific histone variant TH2B in tetraploid and haploid germ cells and their implications on the dynamics of nucleosome structure.

    abstract::Histones regulate a variety of chromatin templated events by their post-translational modifications (PTMs). Although there are extensive reports on the PTMs of canonical histones, the information on the histone variants remains very scanty. Here, we report the identification of different PTMs, such as acetylation, met...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr500597a

    authors: Pentakota SK,Sandhya S,P Sikarwar A,Chandra N,Satyanarayana Rao MR

    更新日期:2014-12-05 00:00:00

  • A Method for Comprehensive Glycosite-Mapping and Direct Quantitation of Serum Glycoproteins.

    abstract::A comprehensive glycan map was constructed for the top eight abundant glycoproteins in plasma using both specific and nonspecific enzyme digestions followed by nano liquid chromatography (LC)-chip/quadrupole time-of-flight mass spectrometry (MS) analysis. Glycopeptides were identified using an in-house software tool, ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.5b00756

    authors: Hong Q,Ruhaak LR,Stroble C,Parker E,Huang J,Maverakis E,Lebrilla CB

    更新日期:2015-12-04 00:00:00