Abstract:
:From investigation of 2000 soil isolates, we identified two serine-type amidohydrolases that can hydrolyze d-aminoacyl derivatives from the culture supernatant of Streptomyces species 82F2 and 83D12. The enzymes, redesignated as 82F2-DAP and 83D12-DAP, were purified for homogeneity and characterized. Each enzyme had molecular mass of approximately 40 kDa, and each showed moderate stability with respect to temperature and pH. Among hydrolytic activities toward d-aminoacyl-pNAs, the enzymes showed strict specificity toward D-Phe-pNA, but showed broad specificity toward D-aminoacyl esters. The specific activity for D-Phe-pNA hydrolysis of 82F2-DAP was ten-fold higher than that of 83D12-DAP. As a second function, each enzyme showed peptide bond formation activity by its function of aminolysis reaction. Based on results of D-Phe-D-Phe synthesis under various conditions, we propose a reaction mechanism for D-Phe-D-Phe production. Furthermore, the enzymes exhibited peptide elongation activity, producing oligo homopeptide in a one-pot reaction. We cloned the genes encoding each enzyme, which revealed that the primary structure of each enzyme showed 30-60% identity with those of peptidases belonging to the clan SE, S12 peptidase family categorized as serine peptidase with d-stereospecificity.
journal_name
Biochimiejournal_title
Biochimieauthors
Arima J,Ito H,Hatanaka T,Mori Ndoi
10.1016/j.biochi.2011.04.020subject
Has Abstractpub_date
2011-09-01 00:00:00pages
1460-9issue
9eissn
0300-9084issn
1638-6183pii
S0300-9084(11)00139-8journal_volume
93pub_type
杂志文章相关文献
BIOCHIMIE文献大全abstract::The multisubunit Mediator is an evolutionary conserved transcriptional coregulatory complex in eukaryotes. It is needed for the transcriptional regulation of gene expression in general as well as in a gene specific manner. Mediator complex subunits interact with different transcription factors as well as components of...
journal_title:Biochimie
pub_type: 杂志文章,评审
doi:10.1016/j.biochi.2017.10.012
更新日期:2018-01-01 00:00:00
abstract::We describe PGtrans, a new and freely available protein sequence databank (2625 sequences, 554198 amino-acids). This data bank is routinely produced by automatic computer translation of the nucleotide sequence library GenBank. The information needed for the translation process (transcriptional orientation, location of...
journal_title:Biochimie
pub_type: 杂志文章
doi:10.1016/s0300-9084(85)80261-3
更新日期:1985-05-01 00:00:00
abstract::Bacterial survive and respond to adverse changes in the environment by regulating gene transcription through two-component regulatory systems. In Salmonella Typhimurium the STM1485 gene expression is induced under low pH (4.5) during replication inside the epithelial host cell, but it is not involved in sensing or res...
journal_title:Biochimie
pub_type: 杂志文章
doi:10.1016/j.biochi.2019.02.005
更新日期:2019-05-01 00:00:00
abstract::In the present study we have investigated the thermal stability of the globular transport protein human serum albumin (HSA), in the presence of two small chain polyethylene glycols (namely PEG 200 and PEG 400). Both near- and far-UV circular dichroism (CD) study reveal that addition of PEG moderately increases the α-h...
journal_title:Biochimie
pub_type: 杂志文章
doi:10.1016/j.biochi.2014.05.009
更新日期:2014-09-01 00:00:00
abstract::A novel approach to genetic sequence analysis is presented. This approach, based on compression of algorithms, has been launched simultaneously by Grumbach and Tahi, Milosavljevic and Rivals. To reduce the description of an object, a compression algorithm replaces some regularities in the description by special codes....
journal_title:Biochimie
pub_type: 杂志文章
doi:10.1016/0300-9084(96)84763-8
更新日期:1996-01-01 00:00:00
abstract::The emergence of drug-resistant Mycobacterium tuberculosis (Mtb) stains has escalated the need for developing more efficient drugs and therapeutic strategies against tuberculosis. Here we functionally annotate a secretory mycobacterial asparaginase Rv1538c (MtA) and describe its biochemical properties. MtA primarily e...
journal_title:Biochimie
pub_type: 杂志文章
doi:10.1016/j.biochi.2020.12.023
更新日期:2021-01-05 00:00:00
abstract::A higher level of N-acetylglucosamine incorporation by proteinic and polyprenic endogenous acceptors is observed after infection by Myxovirus. This phenomenon occurs in whole mitochondria as in outer mitochondrial membranes, where it is particularly obvious with proteinic endogenous acceptors. Under viral infection, n...
journal_title:Biochimie
pub_type: 杂志文章
doi:10.1016/s0300-9084(80)80373-7
更新日期:1980-01-01 00:00:00
abstract::Virtually all brain circuits are physically embedded in a three-dimensional matrix of fibers that release 5-hydroxytryptamine (5-HT, serotonin). The density of this matrix varies across brain regions and cortical laminae, and it is altered in some mental disorders, including Major Depressive Disorder and Autism Spectr...
journal_title:Biochimie
pub_type: 杂志文章
doi:10.1016/j.biochi.2018.07.014
更新日期:2019-06-01 00:00:00
abstract::The interactions of DNA with histone H4 and with its fragments N-H4 (1-84) and C-H4 (85-102) have been studied by using electrooptical techniques, viscosity and electron microscopy. Electron microscopy reveals that histone H4 induces a large folding of DNA molecules : this is in agreement with electrooptical measureme...
journal_title:Biochimie
pub_type: 杂志文章
doi:10.1016/s0300-9084(80)80398-1
更新日期:1980-01-01 00:00:00
abstract::Mouse brain myelin consists of a continuum of particles of different densities, as shown by sucrose density gradient centrifugation. In normal animals most of the material (65 per cent) is concentrated between 0.6 and 0.7 M sucrose (the maximum being found at 0.66 M sucrose, corresponding to 23 per cent). The density ...
journal_title:Biochimie
pub_type: 杂志文章
doi:10.1016/s0300-9084(77)80213-7
更新日期:1977-01-01 00:00:00
abstract::In vitro cycling rates of E. coli ribosomes and of elongation factors EF-Tu and EF-G have been obtained and these are compatible with translation rates in vivo. We show that the rate of translocation is faster than 50 s-1 and therefore that the EF-G function is not a rate limiting step in protein synthesis. The in viv...
journal_title:Biochimie
pub_type: 杂志文章
doi:10.1016/0300-9084(88)90244-1
更新日期:1988-05-01 00:00:00
abstract::Nucleic acid Aptamers are ligands that are selected by a process of molecular evolution to bind with high affinities and specificities to a specific target. Recently, an increasing number of aptamers have been selected against biomarkers expressed at the surface of human cells or infectious pathogens. This class of ta...
journal_title:Biochimie
pub_type: 杂志文章,评审
doi:10.1016/j.biochi.2012.02.025
更新日期:2012-07-01 00:00:00
abstract::The imprinted gene Grb10 influences fetal growth, adult behavior and tumor formation. Investigating this gene often involves consecutive passaging of cells in vitro. We analyzed changes in Grb10 DNA methylation and histone modifications in serially passaged adult mouse tail-tip fibroblast cells with bisulfite genomic ...
journal_title:Biochimie
pub_type: 杂志文章
doi:10.1016/j.biochi.2012.08.009
更新日期:2012-12-01 00:00:00
abstract::(-)-Epigallocatechin-3-gallate (EGCG), a well-known chemopreventive factor, induces cancer cells undergoing apoptosis. Over the last several years, we have shown that the mitochondrial NADP(+)-dependent isocitrate dehydrogenase (IDPm) functions as an antioxidant and anti-apoptotic protein by supplying NADPH to antioxi...
journal_title:Biochimie
pub_type: 杂志文章
doi:10.1016/j.biochi.2011.06.025
更新日期:2011-10-01 00:00:00
abstract::Kinetic parameters characterizing the catalytic activities of enzymes are typically investigated in dilute solutions. However, in reality, these reactions occur in cells that, in addition to water and ions, are full of other macromolecules including proteins, nucleic acids, lipids, and metabolites. Such a crowded envi...
journal_title:Biochimie
pub_type: 杂志文章
doi:10.1016/j.biochi.2020.07.009
更新日期:2020-09-01 00:00:00
abstract::The bovine oxytocin precursor was expressed in Escherichia coli as a fusion protein by cloning the hormone encoding cDNA in frame behind the replicase gene of the RNA phage MS2. By step-wise extraction with different urea concentrations, the fusion protein was enriched in the 7 M urea fraction and further purified by ...
journal_title:Biochimie
pub_type: 杂志文章
doi:10.1016/0300-9084(88)90165-4
更新日期:1988-01-01 00:00:00
abstract::Directed mutagenesis has been used to study the nicotinamide subsite of the glycolytic NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (GAPDH). Residue Asn313 is involved together with the carboxyamide moiety of the nicotinamide ring in a complex network of hydrogen bonding interactions which fix the position o...
journal_title:Biochimie
pub_type: 杂志文章
doi:10.1016/0300-9084(90)90119-2
更新日期:1990-08-01 00:00:00
abstract::Diabetic cardiomyopathy is related to oxidative stress and correlated with the presence of advanced glycation end products (AGEs). In a clinical setting, AGEs can be detected in patients presenting diabetic cardiomyopathy; however, the underlying mechanism has yet to be elucidated. In our previous study, AGEs increase...
journal_title:Biochimie
pub_type: 杂志文章
doi:10.1016/j.biochi.2015.07.019
更新日期:2015-11-01 00:00:00
abstract::Purified chromatin from pig lymph nodes has been prepared and used for the isolation of chromatin proteins and non-histine proteins. Saccharose nuclei from this tissue have been used for the preparation of nuclear phenol-soluble phosphoproteins. The isolated proteins have been compared by analytical electrophoresis in...
journal_title:Biochimie
pub_type: 杂志文章
doi:10.1016/s0300-9084(76)80391-4
更新日期:1976-01-01 00:00:00
abstract::The nuclear metabolism of poly(ADP-ribose) is mainly regulated by poly(ADP-ribose) polymerase-1 (PARP-1) and by poly(ADP-ribose) glycohydrolase (PARG). A PARP-like enzyme, V-PARP, and a PARG isoform are present in the extra-nuclear compartment of mammalian cells, even if poly(ADP-ribose) has never been detected therei...
journal_title:Biochimie
pub_type: 杂志文章
doi:10.1016/s0300-9084(02)00017-2
更新日期:2002-12-01 00:00:00
abstract::Direct demonstration of the reversible dissociation of native dimeric methionyl-tRNA synthetase from E. coli has been obtained using small angle neutron scattering and deuterated enzyme. Structural parameters of the fully deuterated dimer are very similar to the hydrogenated one. Analysis of the variations of the inte...
journal_title:Biochimie
pub_type: 杂志文章
doi:10.1016/s0300-9084(85)80205-4
更新日期:1985-06-01 00:00:00
abstract::Wheat germ lysate was used as a model system for in vitro translation. We show that an increase of the exchange surface between the reaction mixture and the atmosphere enhanced the amount of incorporated cysteine, indicating that early arrest of protein synthesis previously observed in such a system was due to oxygen ...
journal_title:Biochimie
pub_type: 杂志文章
doi:10.1016/0300-9084(96)88123-5
更新日期:1995-01-01 00:00:00
abstract::Two forms of baker's yease valyl-tRNA synthetase have been purified to apparent homogeneity by classical methods. It was demonstrated that one of the two forms of the enzyme originates from the other by proteolysis, the respective amounts of each form depending on the physiological state of the yeast. The species main...
journal_title:Biochimie
pub_type: 杂志文章
doi:10.1016/s0300-9084(76)80579-2
更新日期:1975-01-01 00:00:00
abstract::The published literature contains a number of examples of normally non-cytoplasmic proteins whose transport out of the cytoplasm is not completely abolished by drastic alterations to their routing signals (signal sequences, etc). Furthermore, there are numerous examples of cytoplasmic proteins that can be routed to an...
journal_title:Biochimie
pub_type: 杂志文章,评审
doi:10.1016/0300-9084(90)90133-2
更新日期:1990-02-01 00:00:00
abstract::This paper provides an overview of the usefulness of the resonance Raman (RR) spectroscopy in the determination of the structural and electronic properties of heme(s) included in c-type cytochromes. It reviews the mode assignments presently available for heme c and includes recent RR data on the most important subclas...
journal_title:Biochimie
pub_type: 杂志文章,评审
doi:10.1016/0300-9084(94)90145-7
更新日期:1994-01-01 00:00:00
abstract::A 3-D model of the tyrosylable tRNA-like domain of the genomic brome mosaic virus RNAs was built by computer modelling based on solution probing of the molecule with different chemical and enzymatic reagents. This model encompasses four major structural domains, including two peculiar substructures oriented perpendicu...
journal_title:Biochimie
pub_type: 杂志文章,评审
doi:10.1016/0300-9084(93)90014-j
更新日期:1993-01-01 00:00:00
abstract::Cysteine-rich secretory proteins (CRISPs), characterized by 16 conserved cysteines, are distributed in a wide range of organisms, such as secernenteas, amphibians, reptiles and mammals. In the previous studies, a novel CRISP family member (cysteine-rich buccal gland protein, CRBGP) was separated from the buccal gland ...
journal_title:Biochimie
pub_type: 杂志文章
doi:10.1016/j.biochi.2015.11.020
更新日期:2016-04-01 00:00:00
abstract::The synthesis of S100 protein increases toward the end of the exponential phase of growth of clonal rat glial cells C6 in monolayer culture. Moreover the synthesis of this protein can be increased by treatment of C6 cells with the lectin succinylated concanavalin A (succinyl ConA). In order to study the relationship b...
journal_title:Biochimie
pub_type: 杂志文章
doi:10.1016/s0300-9084(84)80024-3
更新日期:1983-11-01 00:00:00
abstract::Oligonucleotides are multifunctional molecules which can interfere with gene expression by different mechanism such as antisense, RNA interference, ribozymes, etc. For most in vivo diagnostic and therapeutic applications, oligonucleotides need to be delivered to the intracellular compartment of a specific organ, a dif...
journal_title:Biochimie
pub_type: 杂志文章,评审
doi:10.1016/j.biochi.2005.04.013
更新日期:2005-09-01 00:00:00
abstract::There are five subtypes of muscarinic acetylcholine receptors (M(1) to M(5)) which control a large number of physiological processes, such as the function of heart and smooth muscles, glandular secretion, release of neurotransmitters, gene expression and cognitive functions as learning and memory. A selective ligand i...
journal_title:Biochimie
pub_type: 杂志文章,评审
doi:10.1016/s0300-9084(00)01176-7
更新日期:2000-09-01 00:00:00