Regulation of type VI secretion gene clusters by sigma54 and cognate enhancer binding proteins.

Abstract:

:Type VI secretion systems (T6SS) are bacteriophage-derived macromolecular machines responsible for the release of at least two proteins in the milieu, which are thought to form an extracellular appendage. Although several T6SS have been shown to be involved in the virulence of animal and plant pathogens, clusters encoding these machines are found in the genomes of most species of gram-negative bacteria, including soil, marine, and environmental isolates. T6SS have been associated with several phenotypes, ranging from virulence to biofilm formation or stress sensing. Their various environmental niches and large diversity of functions are correlated with their broad variety of regulatory mechanisms. Using a bioinformatic approach, we identified several clusters, including those of Vibrio cholerae, Aeromonas hydrophila, Pectobacterium atrosepticum, Pseudomonas aeruginosa, Pseudomonas syringae pv. tomato, and a Marinomonas sp., which possess typical -24/-12 sequences, recognized by the alternate sigma factor sigma 54 (σ(54) or σ(N)). σ(54), which directs the RNA polymerase to these promoters, requires the action of a bacterial enhancer binding protein (bEBP), which binds to cis-acting upstream activating sequences. Putative bEBPs are encoded within the T6SS gene clusters possessing σ(54) boxes. Using in vitro binding experiments and in vivo reporter fusion assays, we showed that the expression of these clusters is dependent on both σ(54) and bEBPs.

journal_name

J Bacteriol

journal_title

Journal of bacteriology

authors

Bernard CS,Brunet YR,Gavioli M,Lloubès R,Cascales E

doi

10.1128/JB.00029-11

subject

Has Abstract

pub_date

2011-05-01 00:00:00

pages

2158-67

issue

9

eissn

0021-9193

issn

1098-5530

pii

JB.00029-11

journal_volume

193

pub_type

杂志文章
  • Identification of genes encoding exported Mycobacterium tuberculosis proteins using a Tn552'phoA in vitro transposition system.

    abstract::Secreted and cell envelope-associated proteins are important to both Mycobacterium tuberculosis pathogenesis and the generation of protective immunity to M. tuberculosis. We used an in vitro Tn552'phoA transposition system to identify exported proteins of M. tuberculosis. The system is simple and efficient, and the tr...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.182.10.2732-2740.2000

    authors: Braunstein M,Griffin TJ IV,Kriakov JI,Friedman ST,Grindley ND,Jacobs WR Jr

    更新日期:2000-05-01 00:00:00

  • Conservation of genetic linkage in nonisogenic isolates of Candida albicans.

    abstract::A number of laboratories are now engaged in the genetic analysis of Candida albicans. This diploid yeast, the major fungal pathogen of humans, is imperfect. Parasexual techniques have been devised for complementation and recombination analysis in this organism. This paper attempts to address the question of the extent...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.156.2.498-506.1983

    authors: Poulter R,Hanrahan V

    更新日期:1983-11-01 00:00:00

  • Stationary-phase variation due to transposition of novel insertion elements in Xanthomonas oryzae pv. oryzae.

    abstract::Xanthomonas oryzae pv. oryzae causes bacterial leaf blight, a serious disease of rice. Spontaneous mutants which are deficient for virulence and extracellular polysaccharide (Eps) production accumulate in large numbers in stationary-phase cultures of this bacterium, a phenomenon which we have called stationary-phase v...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.182.17.4797-4802.2000

    authors: Rajeshwari R,Sonti RV

    更新日期:2000-09-01 00:00:00

  • Autotrophic and heterotrophic metabolism of Hydrogenomonas. I. Growth yields and patterns under dual substrate conditions.

    abstract::Auxotrophic mutants of Hydrogenomonas eutropha and H. facilis requiring utilizable amino acids were employed to demonstrate the simultaneous utilization of H(2) and an organic substrate for growth. The ratio of the cell yields under dual substrate conditions compared to heterotrophic conditions indicated the relative ...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.95.4.1469-1475.1968

    authors: DeCicco BT,Stukus PE

    更新日期:1968-04-01 00:00:00

  • Inhibition of Escherichia coli acetyl coenzyme A carboxylase by acyl-acyl carrier protein.

    abstract::Escherichia coli acetyl coenzyme A carboxylase (ACC), the first enzyme of the fatty acid biosynthetic pathway, is inhibited by acylated derivatives of acyl carrier protein (ACP). ACP lacking an acyl moiety does not inhibit ACC. Acylated derivatives of ACP having chain lengths of 6 to 20 carbon atoms were similarly inh...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.183.4.1499-1503.2001

    authors: Davis MS,Cronan JE Jr

    更新日期:2001-02-01 00:00:00

  • Protoplast formation and leakage of intramembrane cell components: induction by the competence activator substance of pneumococci.

    abstract::Treatment of pneumococci with activator (a protein that induces bacterial "competence" to absorb deoxyribonucleic acid molecules and undergo genetic transformation) can cause either protoplast formation or leakage of intracellular components to the medium depending on postincubation conditions. The leaked intracellula...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.121.1.344-353.1975

    authors: Seto H,Tomasz A

    更新日期:1975-01-01 00:00:00

  • Properties of crystalline L-ornithine: alpha-ketoglutarate delta-aminotransferase from Bacillus sphaericus.

    abstract::The distribution of bacterial L-ornithine: alpha-ketoglutarate delta-aminotransferase (L-ornithine:2-oxo-acid aminotransferase [EC 2.6.1.13]) was investigated, and Bacillus sphaericus (IFO 3525) was found to have the highest activity of the enzyme, which was inducibly formed by addition of L-ornithine or L-arginine to...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.148.1.43-50.1981

    authors: Yasuda M,Tanizawa K,Misono H,Toyama S,Soda K

    更新日期:1981-10-01 00:00:00

  • Inhibitory effect of novobiocin on ribonucleic acid synthesis during germination of Bacillus subtilis spores.

    abstract::Novobiocin inhibited ribonculeic acid synthesis during germination of Bacillus subtilis spores. Transcription of certain kinds of genes probably required a preceding conformational change in deoxyribonucleic acid. ...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.142.1.366-368.1980

    authors: Matsuda M,Kameyama T

    更新日期:1980-04-01 00:00:00

  • Evidence that the isomerization of D-ribose and L-rhamnose is catalyzed by the same enzyme in Mycobacterium smegmatis.

    abstract::D-Ribose isomerase was purified and crystallized from cells of Mycobacterium smegmatis grown on either D-ribose or L-rhamnose. Isomerase activity for both of these sugars remained together throughout the purification. The isomerase from L-rhamnose-grown cells had the same chemical and physical properties as the enzyme...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.126.1.553-555.1976

    authors: Izumori K,Mitchell M,Elbein AD

    更新日期:1976-04-01 00:00:00

  • Gene fusion is a possible mechanism underlying the evolution of STA1.

    abstract::DNA from the STA1 (extracellular glucoamylase) gene of Saccharomyces diastaticus was used as a probe to enable the cloning by colony hybridization of three DNA fragments from Saccharomyces cerevisiae; these were designated S1, S2, and SGA (intracellular, sporulation-specific glucoamylase gene). To examine the evolutio...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.169.5.2142-2149.1987

    authors: Yamashita I,Nakamura M,Fukui S

    更新日期:1987-05-01 00:00:00

  • Ultrastructural analysis during germination and outgrowth of Bacillus subtilis spores.

    abstract::Electron microscopy of thin sections of dormant and germinating spores of Bacillus subtilis 168 revealed a progressive change in the structure of the cortex, outer spore coat, and inner spore coat. The initial changes were observed in the cortex region, which showed a loose fibrous network within 10 min of germination...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.120.1.475-481.1974

    authors: Santo LY,Doi RH

    更新日期:1974-10-01 00:00:00

  • Direct quantitation of the numbers of individual penicillin-binding proteins per cell in Staphylococcus aureus.

    abstract::The penicillin-binding proteins (PBPs) are a set of enzymes that participate in bacterial peptidoglycan assembly. The absolute numbers of each PBP were determined by direct measurement and have been reported for two Staphylococcus aureus strains, RN4220 (methicillin-sensitive S. aureus) and RN450M (methicillin-resista...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.184.2.588-591.2002

    authors: Pucci MJ,Dougherty TJ

    更新日期:2002-01-01 00:00:00

  • Suppression of conformation-compromised mutants of Salmonella enterica serovar Typhimurium MelB.

    abstract::The crystal structure of the Na(+)-coupled melibiose permease of Salmonella enterica serovar Typhimurium (MelBSt) demonstrates that MelB is a member of the major facilitator superfamily of transporters. Arg residues at positions 295, 141, and 363 are involved in interdomain interactions at the cytoplasmic side by gove...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.01868-14

    authors: Amin A,Ethayathulla AS,Guan L

    更新日期:2014-09-01 00:00:00

  • Initiation of chromosome replication in bacteria: analysis of an inhibitor control model.

    abstract::This article contains an analysis of a version of the well-known inhibitor-dilution model for the control of initiation of chromosome replication in bacteria. According to this model, an unstable inhibitor interacts with an initiation primer in a hit-and-destroy fashion to prevent successful initiation; both constitue...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.169.11.5231-5240.1987

    authors: Margalit H,Grover NB

    更新日期:1987-11-01 00:00:00

  • Repair of radiation-induced damage in Escherichia coli. II. Effect of rec and uvr mutations on radiosensitivity, and repair of x-ray-induced single-strand breaks in deoxyribonucleic acid.

    abstract::Strains of Escherichia coli K-12 mutant in the genes controlling excision repair (uvr) and genetic recombination (rec) have been studied with reference to their radiosensitivity and their ability to repair X-ray-induced single-strand breaks in deoxyribonucleic acid (DNA). Mutations in the rec genes appreciably increas...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.103.1.49-54.1970

    authors: Kapp DS,Smith KC

    更新日期:1970-07-01 00:00:00

  • Menaquinone (vitamin K2) biosynthesis: localization and characterization of the menA gene from Escherichia coli.

    abstract::A key reaction in the biosynthesis of menaquinone involves the conversion of the soluble bicyclic naphthalenoid compound 1, 4-dihydroxy-2-naphthoic acid (DHNA) to the membrane-bound demethylmenaquinone. The enzyme catalyzing this reaction, DHNA-octaprenyltransferase, attaches a 40-carbon side chain to DHNA. The menA g...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.180.10.2782-2787.1998

    authors: Suvarna K,Stevenson D,Meganathan R,Hudspeth ME

    更新日期:1998-05-01 00:00:00

  • Biochemical and genetic investigation of initial reactions in aerobic degradation of the bile acid cholate in Pseudomonas sp. strain Chol1.

    abstract::Bile acids are surface-active steroid compounds with toxic effects for bacteria. Recently, the isolation and characterization of a bacterium, Pseudomonas sp. strain Chol1, growing with bile acids as the carbon and energy source was reported. In this study, initial reactions of the aerobic degradation pathway for the b...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.00665-07

    authors: Birkenmaier A,Holert J,Erdbrink H,Moeller HM,Friemel A,Schoenenberger R,Suter MJ,Klebensberger J,Philipp B

    更新日期:2007-10-01 00:00:00

  • The Last r Locus Unveiled: T4 RIII Is a Cytoplasmic Antiholin.

    abstract:UNLABELLED:The latent period of phage T4, normally ∼25 min, can be extended indefinitely if the infected cell is superinfected after 5 min. This phenomenon, designated lysis inhibition (LIN), was first described in the 1940s and is genetically defined by mutations in diverse T4 r genes. RI, the main effector of LIN, ha...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.00294-16

    authors: Chen Y,Young R

    更新日期:2016-08-25 00:00:00

  • Role of the sigmaD-dependent autolysins in Bacillus subtilis population heterogeneity.

    abstract::Exponentially growing populations of Bacillus subtilis contain two morphologically and functionally distinct cell types: motile individuals and nonmotile multicellular chains. Motility differentiation arises because RNA polymerase and the alternative sigma factor sigma(D) activate expression of flagellin in a subpopul...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.00521-09

    authors: Chen R,Guttenplan SB,Blair KM,Kearns DB

    更新日期:2009-09-01 00:00:00

  • Isolation and characterization of a gene from Streptomyces sp. strain C5 that confers the ability to convert daunomycin to doxorubicin on Streptomyces lividans TK24.

    abstract::DNA sequence analysis of a region of the Streptomyces sp. strain C5 daunomycin biosynthesis gene cluster, located between the daunomycin polyketide biosynthesis gene cluster and a dnrI (transcriptional activator) homolog, revealed the presence of a gene encoding a P-450-like enzyme with a deduced Mr of 46,096. Express...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.178.11.3389-3395.1996

    authors: Dickens ML,Strohl WR

    更新日期:1996-06-01 00:00:00

  • Chemical modification of Streptococcus flagellar motors.

    abstract::Video techniques were used to record changes in motility of cells of Streptococcus sp. strain V4051 exposed to a variety of protein modification reagents. Starved cells were tethered to glass by a single flagellum, energized metabolically with glucose, or treated with valinomycin and energized artificially via shifts ...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.158.3.832-843.1984

    authors: Conley MP,Berg HC

    更新日期:1984-06-01 00:00:00

  • Levels of enzymes involved in the synthesis of acetate from CO2 in Clostridium thermoautotrophicum.

    abstract::The acetogenic bacterium Clostridium thermoautotrophicum, grown on methanol, glucose, or CO2-H2, contained high levels of corrinoids, formate dehydrogenase, tetrahydrofolate enzymes, carbon monoxide dehydrogenase, and hydrogenase. Cell-free extracts catalyzed pyruvate-dependent formation of acetate from methyltetrahyd...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.151.1.507-509.1982

    authors: Clark JE,Ragsdale SW,Ljungdahl LG,Wiegel J

    更新日期:1982-07-01 00:00:00

  • Cloning and insertional inactivation of the dye (sfrA) gene, mutation of which affects sex factor F expression and dye sensitivity of Escherichia coli K-12.

    abstract::Deletions of the Escherichia coli K-12 chromosome between trpR and thr render the bacterium sensitive to the dye toluidine blue (Dye-), and if male (Hfr or F'), the strain is sterile (Fex-), failing to donate F' or chromosomal markers and resistant to male-specific phages as a consequence of its inability to elaborate...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.154.3.1309-1314.1983

    authors: Buxton RS,Drury LS

    更新日期:1983-06-01 00:00:00

  • Comparative analysis of proteins induced by heat shock, salinity, and osmotic stress in the nitrogen-fixing cyanobacterium Anabaena sp. strain L-31.

    abstract::Heat, salinity, or osmotic stress influenced protein synthesis in nitrogen-fixing Anabaena sp. strain L-31. Salinity and osmotic stresses were identical and specifically induced 15 polypeptides. Four polypeptides were unique to heat shock, and four other polypeptides were induced under every stress. The results demons...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.171.9.5187-5189.1989

    authors: Bhagwat AA,Apte SK

    更新日期:1989-09-01 00:00:00

  • Structure and arrangement of flagella in species of the genus Beneckea and Photobacterium fischeri.

    abstract::Species of marine bacteria belonging to the genus Beneckea and strains of Photobacterium fischeri were negatively stained and examined by means of the electron microscope to determine the structure and arrangement of their flagella. All of the species of the genus Beneckea had single, polar, sheathed flagella when gro...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.107.1.295-302.1971

    authors: Allen RD,Baumann P

    更新日期:1971-07-01 00:00:00

  • The SXT conjugative element and linear prophage N15 encode toxin-antitoxin-stabilizing systems homologous to the tad-ata module of the Paracoccus aminophilus plasmid pAMI2.

    abstract::A group of proteic toxin-antitoxin (TA) cassettes whose representatives are widely distributed among bacterial genomes has been identified. These cassettes occur in chromosomes, plasmids, bacteriophages, and noncomposite transposons, as well as in the SXT conjugative element of Vibrio cholerae. The following four homo...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.01610-06

    authors: Dziewit L,Jazurek M,Drewniak L,Baj J,Bartosik D

    更新日期:2007-03-01 00:00:00

  • Ribosome-binding sites and RNA-processing sites in the transcript of the Escherichia coli unc operon.

    abstract::The polycistronic mRNA encoding the nine genes of the unc operon of Escherichia coli was studied. We demonstrated the ribosome-binding capabilities of six of the nine unc genes, uncB, uncE, uncF, uncH, uncA, and uncD, by using the technique of primer extension inhibition or "toeprinting." No toeprint was detected for ...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.171.7.3901-3908.1989

    authors: Schaefer EM,Hartz D,Gold L,Simoni RD

    更新日期:1989-07-01 00:00:00

  • CapE, a 47-amino-acid peptide, is necessary for Bacillus anthracis polyglutamate capsule synthesis.

    abstract::Polyglutamate is found in various bacteria, but displays different functions depending on the species and their environment. Here, we describe a minimal polyglutamate synthesis system in Bacillus anthracis. In addition to the three genes previously described as sufficient for polyglutamate synthesis, this system inclu...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.187.22.7765-7772.2005

    authors: Candela T,Mock M,Fouet A

    更新日期:2005-11-01 00:00:00

  • Increased resistance to chloramphenicol in Rickettsia prowazekii with a note on failure to demonstrate genetic interaction among.

    abstract::Weiss, Emilio (Naval Medical Research Institute, Bethesda, Md.) and Harry R. Dressler. Increased resistance to chloramphenicol in Rickettsia prowazekii with a note on failure to demonstrate genetic interaction among strains. J. Bacteriol. 83:409-414. 1962.-A further effort to produce genetically labeled Rickettsia pro...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.83.2.409-414.1962

    authors: WEISS E,DRESSLER HR

    更新日期:1962-02-01 00:00:00

  • Properties of Bacillus megaterium temperature-sensitive germination mutants.

    abstract::Bacillus megaterium mutants JV-9 and JV-10 are temperature sensitive for initiation of spore germination. At 46 C, they did not lose heat resistance, dipicolinic acid, or absorbance, indicating that the temperature-sensitive blocks are very early in the sequence of initiation reactions. Strain JV-9 was temperature sen...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.121.1.197-203.1975

    authors: Vary JC

    更新日期:1975-01-01 00:00:00