An epistatic ratchet constrains the direction of glucocorticoid receptor evolution.

Abstract:

:The extent to which evolution is reversible has long fascinated biologists. Most previous work on the reversibility of morphological and life-history evolution has been indecisive, because of uncertainty and bias in the methods used to infer ancestral states for such characters. Further, despite theoretical work on the factors that could contribute to irreversibility, there is little empirical evidence on its causes, because sufficient understanding of the mechanistic basis for the evolution of new or ancestral phenotypes is seldom available. By studying the reversibility of evolutionary changes in protein structure and function, these limitations can be overcome. Here we show, using the evolution of hormone specificity in the vertebrate glucocorticoid receptor as a case-study, that the evolutionary path by which this protein acquired its new function soon became inaccessible to reverse exploration. Using ancestral gene reconstruction, protein engineering and X-ray crystallography, we demonstrate that five subsequent 'restrictive' mutations, which optimized the new specificity of the glucocorticoid receptor, also destabilized elements of the protein structure that were required to support the ancestral conformation. Unless these ratchet-like epistatic substitutions are restored to their ancestral states, reversing the key function-switching mutations yields a non-functional protein. Reversing the restrictive substitutions first, however, does nothing to enhance the ancestral function. Our findings indicate that even if selection for the ancestral function were imposed, direct reversal would be extremely unlikely, suggesting an important role for historical contingency in protein evolution.

journal_name

Nature

journal_title

Nature

authors

Bridgham JT,Ortlund EA,Thornton JW

doi

10.1038/nature08249

subject

Has Abstract

pub_date

2009-09-24 00:00:00

pages

515-9

issue

7263

eissn

0028-0836

issn

1476-4687

pii

nature08249

journal_volume

461

pub_type

杂志文章

相关文献

NATURE文献大全
  • Coral mucus functions as an energy carrier and particle trap in the reef ecosystem.

    abstract::Zooxanthellae, endosymbiotic algae of reef-building corals, substantially contribute to the high gross primary production of coral reefs, but corals exude up to half of the carbon assimilated by their zooxanthellae as mucus. Here we show that released coral mucus efficiently traps organic matter from the water column ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature02344

    authors: Wild C,Huettel M,Klueter A,Kremb SG,Rasheed MY,Jørgensen BB

    更新日期:2004-03-04 00:00:00

  • Structure of the acrosomal bundle.

    abstract::In the unactivated Limulus sperm, a 60- micro m-long bundle of actin filaments crosslinked by the protein scruin is bent and twisted into a coil around the base of the nucleus. At fertilization, the bundle uncoils and fully extends in five seconds to support a finger of membrane known as the acrosomal process. This bi...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature02881

    authors: Schmid MF,Sherman MB,Matsudaira P,Chiu W

    更新日期:2004-09-02 00:00:00

  • Resolving the long-standing enigmas of a giant ornithomimosaur Deinocheirus mirificus.

    abstract::The holotype of Deinocheirus mirificus was collected by the 1965 Polish-Mongolian Palaeontological Expedition at Altan Uul III in the southern Gobi of Mongolia. Because the holotype consists mostly of giant forelimbs (2.4 m in length) with scapulocoracoids, for almost 50 years Deinocheirus has remained one of the most...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature13874

    authors: Lee YN,Barsbold R,Currie PJ,Kobayashi Y,Lee HJ,Godefroit P,Escuillié F,Chinzorig T

    更新日期:2014-11-13 00:00:00

  • Glutamate stimulates inositol phosphate formation in striatal neurones.

    abstract::The major excitatory amino acids, glutamate (Glu) and aspartate (Asp), are thought to act at three receptor subtypes in the mammalian central nervous system (CNS). These are termed quisqualate (QA), N-methyl-D-aspartate (NMDA) and kainate (KA) receptors according to the specific agonist properties of these compounds r...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/317717a0

    authors: Sladeczek F,Pin JP,Récasens M,Bockaert J,Weiss S

    更新日期:1985-10-24 00:00:00

  • Quantum-limit Chern topological magnetism in TbMn6Sn6.

    abstract::The quantum-level interplay between geometry, topology and correlation is at the forefront of fundamental physics1-15. Kagome magnets are predicted to support intrinsic Chern quantum phases owing to their unusual lattice geometry and breaking of time-reversal symmetry14,15. However, quantum materials hosting ideal spi...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/s41586-020-2482-7

    authors: Yin JX,Ma W,Cochran TA,Xu X,Zhang SS,Tien HJ,Shumiya N,Cheng G,Jiang K,Lian B,Song Z,Chang G,Belopolski I,Multer D,Litskevich M,Cheng ZJ,Yang XP,Swidler B,Zhou H,Lin H,Neupert T,Wang Z,Yao N,Chang TR,Jia S

    更新日期:2020-07-01 00:00:00

  • Sea-level and deep-sea-temperature variability over the past 5.3 million years.

    abstract::Ice volume (and hence sea level) and deep-sea temperature are key measures of global climate change. Sea level has been documented using several independent methods over the past 0.5 million years (Myr). Older periods, however, lack such independent validation; all existing records are related to deep-sea oxygen isoto...

    journal_title:Nature

    pub_type: 历史文章,杂志文章

    doi:10.1038/nature13230

    authors: Rohling EJ,Foster GL,Grant KM,Marino G,Roberts AP,Tamisiea ME,Williams F

    更新日期:2014-04-24 00:00:00

  • Differences in the kinetics of rod and cone synaptic transmission.

    abstract::Photoreceptors of the vertebrate retina hyperpolarize in response to light. The hyperpolarization elicited by a brief flash is approximately ten times slower in rods than in cones of the same retina. We have examined the amplification and temporal properties of synaptic transfer of rod and cone signals to a common pos...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/296862a0

    authors: Schnapf JL,Copenhagen DR

    更新日期:1982-04-29 00:00:00

  • Self-assembly of spider silk proteins is controlled by a pH-sensitive relay.

    abstract::Nature's high-performance polymer, spider silk, consists of specific proteins, spidroins, with repetitive segments flanked by conserved non-repetitive domains. Spidroins are stored as a highly concentrated fluid dope. On silk formation, intermolecular interactions between repeat regions are established that provide st...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature08962

    authors: Askarieh G,Hedhammar M,Nordling K,Saenz A,Casals C,Rising A,Johansson J,Knight SD

    更新日期:2010-05-13 00:00:00

  • Policies designed for drugs won't work for AI.

    abstract:: ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/d41586-019-00737-2

    authors: Smallman M

    更新日期:2019-03-01 00:00:00

  • Gravitationally redshifted absorption lines in the X-ray burst spectra of a neutron star.

    abstract::The fundamental properties of neutron stars provide a direct test of the equation of state of cold nuclear matter, a relationship between pressure and density that is determined by the physics of the strong interactions between the particles that constitute the star. The most straightforward method of determining thes...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature01159

    authors: Cottam J,Paerels F,Mendez M

    更新日期:2002-11-07 00:00:00

  • High-speed countercurrent chromatography.

    abstract::Support-free high-speed countercurrent liquid chromatography provides a rich domain of applications, some beyond reach of conventional liquid chromatography. ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/326419a0

    authors: Ito Y

    更新日期:1987-03-26 00:00:00

  • Tobacco smoking and somatic mutations in human bronchial epithelium.

    abstract::Tobacco smoking causes lung cancer1-3, a process that is driven by more than 60 carcinogens in cigarette smoke that directly damage and mutate DNA4,5. The profound effects of tobacco on the genome of lung cancer cells are well-documented6-10, but equivalent data for normal bronchial cells are lacking. Here we sequence...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/s41586-020-1961-1

    authors: Yoshida K,Gowers KHC,Lee-Six H,Chandrasekharan DP,Coorens T,Maughan EF,Beal K,Menzies A,Millar FR,Anderson E,Clarke SE,Pennycuick A,Thakrar RM,Butler CR,Kakiuchi N,Hirano T,Hynds RE,Stratton MR,Martincorena I,Janes

    更新日期:2020-02-01 00:00:00

  • Evolution of RNA editing in kinetoplastid protozoa.

    abstract::The editing of RNA in trypanosomatid mitochondria involves the insertion and occasional deletion of uridine residues within coding regions of maxicircle messenger RNA transcripts. The extent to which the transcripts of homologous genes undergo editing differs in different species. In some, entire genes are edited (pan...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/368345a0

    authors: Maslov DA,Avila HA,Lake JA,Simpson L

    更新日期:1994-03-24 00:00:00

  • Defective T-cell receptor signalling and positive selection of Vav-deficient CD4+ CD8+ thymocytes.

    abstract::During lymphocyte development, cellular proliferation and positive and negative selection events ensure the production of T and B lymphocytes bearing highly diverse, but self-tolerant, repertoires of antigen receptors. These processes are initiated when engagement of growth-factor receptors, or the T and B lymphocyte ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/374474a0

    authors: Fischer KD,Zmuldzinas A,Gardner S,Barbacid M,Bernstein A,Guidos C

    更新日期:1995-03-30 00:00:00

  • Attentional requirements in a 'preattentive' feature search task.

    abstract::It is commonly assumed that certain features are so elementary to the visual system that they require no attentional resources to be perceived. Such 'preattentive' features are traditionally identified by visual search performance, in which the reaction time for detecting a feature difference against a set of distract...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/42940

    authors: Joseph JS,Chun MM,Nakayama K

    更新日期:1997-06-19 00:00:00

  • HMGB proteins function as universal sentinels for nucleic-acid-mediated innate immune responses.

    abstract::The activation of innate immune responses by nucleic acids is crucial to protective and pathological immunities and is mediated by the transmembrane Toll-like receptors (TLRs) and cytosolic receptors. However, it remains unknown whether a mechanism exists that integrates these nucleic-acid-sensing systems. Here we sho...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature08512

    authors: Yanai H,Ban T,Wang Z,Choi MK,Kawamura T,Negishi H,Nakasato M,Lu Y,Hangai S,Koshiba R,Savitsky D,Ronfani L,Akira S,Bianchi ME,Honda K,Tamura T,Kodama T,Taniguchi T

    更新日期:2009-11-05 00:00:00

  • Migratory neural crest-like cells form body pigmentation in a urochordate embryo.

    abstract::The neural crest, a source of many different cell types in vertebrate embryos, has not been identified in other chordates. Current opinion therefore holds that neural crest cells were a vertebrate innovation. Here we describe a migratory cell population resembling neural crest cells in the ascidian urochordate Ecteina...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature02975

    authors: Jeffery WR,Strickler AG,Yamamoto Y

    更新日期:2004-10-07 00:00:00

  • Optical addressing of an individual erbium ion in silicon.

    abstract::The detection of electron spins associated with single defects in solids is a critical operation for a range of quantum information and measurement applications under development. So far, it has been accomplished for only two defect centres in crystalline solids: phosphorus dopants in silicon, for which electrical rea...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature12081

    authors: Yin C,Rancic M,de Boo GG,Stavrias N,McCallum JC,Sellars MJ,Rogge S

    更新日期:2013-05-02 00:00:00

  • Rapid gating and anion permeability of an intracellular aquaporin.

    abstract::Aquaporin (AQP) water-channel proteins are freely permeated by water but not by ions or charged solutes. Although mammalian aquaporins were believed to be located in plasma membranes, rat AQP6 is restricted to intracellular vesicles in renal epithelia. Here we show that AQP6 is functionally distinct from other known a...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/46045

    authors: Yasui M,Hazama A,Kwon TH,Nielsen S,Guggino WB,Agre P

    更新日期:1999-11-11 00:00:00

  • Microtubule-motor activity of a yeast centromere-binding protein complex.

    abstract::During cell division, sister chromosomes segregate from each other on a microtubule-based structure called the mitotic spindle. Proteins bind to the centromere, a region of chromosomal DNA, to form the kinetochore, which mediates chromosome attachment to the mitotic spindle microtubules. In the budding yeast Saccharom...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/359533a0

    authors: Hyman AA,Middleton K,Centola M,Mitchison TJ,Carbon J

    更新日期:1992-10-08 00:00:00

  • Microbiome: A bag of surprises.

    abstract:: ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/551S40a

    authors: Ainsworth C

    更新日期:2017-11-08 00:00:00

  • Corrigendum: Reductions in global biodiversity loss predicted from conservation spending.

    abstract::This corrects the article DOI: 10.1038/nature24295. ...

    journal_title:Nature

    pub_type: 杂志文章,已发布勘误

    doi:10.1038/nature25017

    authors: Waldron A,Miller DC,Redding D,Mooers A,Kuhn TS,Nibbelink N,Roberts JT,Tobias JA,Gittleman JL

    更新日期:2018-01-25 00:00:00

  • Specific inhibition of herpesvirus ribonucleotide reductase by a nonapeptide derived from the carboxy terminus of subunit 2.

    abstract::Ribonucleotide reductase, an essential enzyme for the synthesis of deoxyribonucleotides, is formed by the association of two nonidentical subunits in almost all prokaryotic and eukaryotic cells. The same model probably holds for the herpes simplex virus (HSV)-encoded ribonucleotide reductase; two polypeptides of relat...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/321441a0

    authors: Cohen EA,Gaudreau P,Brazeau P,Langelier Y

    更新日期:1986-05-22 00:00:00

  • The Xenopus localized messenger RNA An3 may encode an ATP-dependent RNA helicase.

    abstract::The maternal messenger RNA An3 was originally identified localized to the animal hemisphere of Xenopus laevis oocytes, eggs and early embryos. Xenopus embryos depend on mRNA and protein present in the egg before fertilization (maternal molecules) to provide the information needed for early development. Localization of...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/349717a0

    authors: Gururajan R,Perry-O'Keefe H,Melton DA,Weeks DL

    更新日期:1991-02-21 00:00:00

  • Solution structure of the DNA-binding domain of Cd2-GAL4 from S. cerevisiae.

    abstract::The GAL4 protein activates transcription of the genes required for galactose utilization in Saccharomyces cerevisiae. The protein, consisting of 881 amino acids, is dimeric when bound to one of the approximately twofold symmetrical DNA sites present in the galactose upstream activating sequence (UASG). Here we use two...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/356450a0

    authors: Baleja JD,Marmorstein R,Harrison SC,Wagner G

    更新日期:1992-04-02 00:00:00

  • Frequency of word-use predicts rates of lexical evolution throughout Indo-European history.

    abstract::Greek speakers say "omicronupsilonrho", Germans "schwanz" and the French "queue" to describe what English speakers call a 'tail', but all of these languages use a related form of 'two' to describe the number after one. Among more than 100 Indo-European languages and dialects, the words for some meanings (such as 'tail...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature06176

    authors: Pagel M,Atkinson QD,Meade A

    更新日期:2007-10-11 00:00:00

  • Publisher Correction: Genomic insights into the 2016-2017 cholera epidemic in Yemen.

    abstract::In the HTML version of this Letter, the affiliations for authors Andrew S. Azman, Dhirendra Kumar and Thandavarayan Ramamurthy were inverted (the PDF and print versions of the Letter were correct); the affiliations have been corrected online. ...

    journal_title:Nature

    pub_type: 杂志文章,已发布勘误

    doi:10.1038/s41586-019-0966-0

    authors: Weill FX,Domman D,Njamkepo E,Almesbahi AA,Naji M,Nasher SS,Rakesh A,Assiri AM,Sharma NC,Kariuki S,Pourshafie MR,Rauzier J,Abubakar A,Carter JY,Wamala JF,Seguin C,Bouchier C,Malliavin T,Bakhshi B,Abulmaali HHN,Kuma

    更新日期:2019-02-01 00:00:00

  • Molybdenum chloride catalysts for Z-selective olefin metathesis reactions.

    abstract::The development of catalyst-controlled stereoselective olefin metathesis processes has been a pivotal recent advance in chemistry. The incorporation of appropriate ligands within complexes based on molybdenum, tungsten and ruthenium has led to reactivity and selectivity levels that were previously inaccessible. Here w...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature21043

    authors: Koh MJ,Nguyen TT,Lam JK,Torker S,Hyvl J,Schrock RR,Hoveyda AH

    更新日期:2017-02-02 00:00:00

  • Trophic cascades across ecosystems.

    abstract::Predation can be intense, creating strong direct and indirect effects throughout food webs. In addition, ecologists increasingly recognize that fluxes of organisms across ecosystem boundaries can have major consequences for community dynamics. Species with complex life histories often shift habitats during their life ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature03962

    authors: Knight TM,McCoy MW,Chase JM,McCoy KA,Holt RD

    更新日期:2005-10-06 00:00:00

  • New evidence on deinonychosaurian dinosaurs from the Late Cretaceous of Patagonia.

    abstract::Most of what is known about the evolution of deinonychosaurs (that is, the group of theropods most closely related to birds) is based on discoveries from North America and Asia. Except for Unenlagia comahuensis and some fragmentary remains from northern Africa, no other evidence was available on deinonychosaurian dive...

    journal_title:Nature

    pub_type: 历史文章,杂志文章

    doi:10.1038/nature03285

    authors: Novas FE,Pol D

    更新日期:2005-02-24 00:00:00