Thermodynamic basis of the enhanced specificity of structured DNA probes.

abstract：:The fossil record of land plants is an obvious source of information on the dynamics of mass extinctions in the geological past. In conjunction with the end-Permian ecological crisis, approximately 250 million years ago, palynological data from East Greenland reveal some unanticipated patterns. We document the signifi...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Looy CV,Twitchett RJ,Dilcher DL,Van Konijnenburg-Van Cittert JH,Visscher H

更新日期：2001-07-03 00:00:00

abstract：:The emerging method of femtosecond crystallography (FX) may extend the diffraction resolution accessible from small radiation-sensitive crystals and provides a means to determine catalytically accurate structures of acutely radiation-sensitive metalloenzymes. Automated goniometer-based instrumentation developed for us...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Cohen AE,Soltis SM,González A,Aguila L,Alonso-Mori R,Barnes CO,Baxter EL,Brehmer W,Brewster AS,Brunger AT,Calero G,Chang JF,Chollet M,Ehrensberger P,Eriksson TL,Feng Y,Hattne J,Hedman B,Hollenbeck M,Holton JM,Keab

更新日期：2014-12-02 00:00:00

abstract：:Leucine-rich repeat kinase 2 (LRRK2) has been associated with a variety of human diseases, including Parkinson's disease and Crohn's disease, whereas LRRK2 deficiency leads to accumulation of abnormal lysosomes in aged animals. However, the cellular roles and mechanisms of LRRK2-mediated lysosomal regulation have rema...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Eguchi T,Kuwahara T,Sakurai M,Komori T,Fujimoto T,Ito G,Yoshimura SI,Harada A,Fukuda M,Koike M,Iwatsubo T

更新日期：2018-09-25 00:00:00

abstract：:It is generally believed that serial passage at high multiplicity of infection (moi) is required for the generation of defective interfering (DI) particles. High levels of DI RNAs are found associated with persistent infections initiated with laboratory cultures of cucumber necrosis virus (CNV). Two synthetic CNV tran...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Rochon DM

更新日期：1991-12-15 00:00:00

abstract：:A new type of self-assembling peptide (sapeptide) scaffolds that serve as substrates for neurite outgrowth and synapse formation is described. These peptide-based scaffolds are amenable to molecular design by using chemical or biotechnological syntheses. They can be tailored to a variety of applications. The sapeptide...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Holmes TC,de Lacalle S,Su X,Liu G,Rich A,Zhang S

更新日期：2000-06-06 00:00:00

abstract：:Representations of scientific knowledge must reflect the dynamic nature of knowledge construction and the evolving networks of relations between scientific concepts. In this article, we describe initial work toward dynamic, visual methods and tools that support the construction, communication, revision, and applicatio...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： MacEachren AM,Gahegan M,Pike W

更新日期：2004-04-06 00:00:00

abstract：:An approach combining signal detection theory and precise 3D reconstructions from serial section electron microscopy (3DEM) was used to investigate synaptic plasticity and information storage capacity at medial perforant path synapses in adult hippocampal dentate gyrus in vivo. Induction of long-term potentiation (LTP...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Bromer C,Bartol TM,Bowden JB,Hubbard DD,Hanka DC,Gonzalez PV,Kuwajima M,Mendenhall JM,Parker PH,Abraham WC,Sejnowski TJ,Harris KM

更新日期：2018-03-06 00:00:00

abstract：:Atomic level characterization of proteins and other macromolecules in the living cell is challenging. Recent advances in NMR instrumentation and methods, however, have enabled in-cell studies with prospects for multidimensional spectral characterization of individual macromolecular components. We present NMR data on t...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Augustus AM,Reardon PN,Spicer LD

更新日期：2009-03-31 00:00:00

abstract：:A dynamical theory for the evolution of the genetic code is presented, which accounts for its universality and optimality. The central concept is that a variety of collective, but non-Darwinian, mechanisms likely to be present in early communal life generically lead to refinement and selection of innovation-sharing pr...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Vetsigian K,Woese C,Goldenfeld N

更新日期：2006-07-11 00:00:00

abstract：:Confronted with an object of perception, an individual will spontaneously try to identify unambiguously and consistently all its parts; except in rare instances of "illusory phenomena," he will immediately succeed. This elementary fact is formalized in a law of visual perception. It is used to define sets of stable st...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Shiman LG

更新日期：1978-04-01 00:00:00

abstract：:Modern practice for training classification deepnets involves a terminal phase of training (TPT), which begins at the epoch where training error first vanishes. During TPT, the training error stays effectively zero, while training loss is pushed toward zero. Direct measurements of TPT, for three prototypical deepnet a...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Papyan V,Han XY,Donoho DL

更新日期：2020-10-06 00:00:00

abstract：:Presynaptic and postsynaptic differentiation occurs at axodendritic contacts between CNS neurons. Synaptic adhesion mediated by synaptic cell adhesion molecule (SynCAM) and beta-neurexins/neuroligins triggers presynaptic differentiation. The signals that trigger postsynaptic differentiation are, however, unknown. Here...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Nam CI,Chen L

更新日期：2005-04-26 00:00:00

abstract：:Regulated changes in gene expression underlie many biological processes, but globally profiling cell-to-cell variations in transcriptional regulation is problematic when measuring single cells. Transcriptome-wide identification of regulatory heterogeneities can be robustly achieved by randomly collecting small numbers...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Bajikar SS,Fuchs C,Roller A,Theis FJ,Janes KA

更新日期：2014-02-04 00:00:00

abstract：:Cigarette smoking causes emphysema, a fatal disease involving extensive structural and functional damage of the lung. Using a guinea pig model and human lung cells, we show that oxidant(s) present in tobacco smoke not only cause direct oxidative damage of lung proteins, contributing to the major share of lung injury, ...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Gupta I,Ganguly S,Rozanas CR,Stuehr DJ,Panda K

更新日期：2016-07-19 00:00:00

abstract：:Neurons vary in their capacity to produce, store, and release neuropeptides packaged in dense-core vesicles (DCVs). Specifically, neurons used for cotransmission have terminals that contain few DCVs and many small synaptic vesicles, whereas neuroendocrine neuron terminals contain many DCVs. Although the mechanistic ba...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Bulgari D,Zhou C,Hewes RS,Deitcher DL,Levitan ES

更新日期：2014-03-04 00:00:00

abstract：:The effect of metabolic depletion on the maturation-associated loss of membrane functions has been studied by using sheep reticulocytes incubated in vitro at 37 degrees C for periods up to 41 hr. ATP was either maintained with glucose, adenosine plus inosine, or depleted with 2-deoxyglucose plus arsenate. Two membrane...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Weigensberg AM,Blostein R

更新日期：1983-08-01 00:00:00

abstract：:IL-17-producing CD27(-) γδ cells (γδ(27-) cells) are widely viewed as innate immune cells that make critical contributions to host protection and autoimmunity. However, factors that promote them over IFN-γ-producing γδ(27+) cells are poorly elucidated. Moreover, although human IL-17-producing γδ cells are commonly imp...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Michel ML,Pang DJ,Haque SF,Potocnik AJ,Pennington DJ,Hayday AC

更新日期：2012-10-23 00:00:00

abstract：:The catalytic cysteine of the typical 2-Cys Prx subfamily of peroxiredoxins is occasionally hyperoxidized to cysteine sulfinic acid during the peroxidase catalytic cycle. Sulfinic Prx (Prx-SO2H) is reduced back to the active form of the enzyme by sulfiredoxin. The abundance of Prx-SO2H was recently shown to oscillate ...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Cho CS,Yoon HJ,Kim JY,Woo HA,Rhee SG

更新日期：2014-08-19 00:00:00

abstract：:A reaction cycle for electron-transportdriven proton pumps is proposed. It includes two distinct conformational states of the pump protein in which the primary electron acceptor has different reduction potentials. This has as an unavoidable consequence that the steady-state rate equation for the catalytic reaction dri...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Brzezinski P,Malmström BG

更新日期：1986-06-01 00:00:00

abstract：:Several domains of the human immunodeficiency virus type 1 (HIV-1) envelope glycoprotein have been identified that are involved in HIV-1-mediated membrane fusion. One domain that is involved in membrane fusion is the hydrophobic amino terminus of the HIV-1 transmembrane glycoprotein gp41. Here we show that a polar sub...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Freed EO,Delwart EL,Buchschacher GL Jr,Panganiban AT

更新日期：1992-01-01 00:00:00

abstract：:It is possible, by using Fourier-transform infrared (FTIR) difference spectroscopy, to detect the conformational changes occurring in both the protein and the chromophore of bacteriorhodopsin during the photocycle. In contrast to Raman spectroscopy, a laser is unnecessary and hence the problem of a perturbing probe be...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Rothschild KJ,Marrero H

更新日期：1982-07-01 00:00:00

abstract：:Turkey erythrocyte membranes showed specific binding of [(3)H]epinephrine. The concentration of hormone required for half-maximal binding (30 muM) was the same as that required for half-maximal activation of the adenylate cyclase located in the same membrane preparation. The binding reaction at 37 degrees C reached co...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Schramm M,Feinstein H,Naim E,Lang E,Lasser M

更新日期：1972-02-01 00:00:00

abstract：:The Rhizobium common nod gene products NodABC are involved in the synthesis of the core lipochitooligosaccharide (Nod factor) structure, whereas the products of the host-specific nod genes are necessary for diverse structural modifications, which vary in different Rhizobium species. The sulfate group attached to the R...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Schultze M,Staehelin C,Röhrig H,John M,Schmidt J,Kondorosi E,Schell J,Kondorosi A

更新日期：1995-03-28 00:00:00

abstract：:The development of new antimicrobial drugs is a priority to combat the increasing spread of multidrug-resistant bacteria. This development is especially problematic in gram-negative bacteria due to the outer membrane (OM) permeability barrier and multidrug efflux pumps. Therefore, we screened for compounds that target...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Hart EM,Mitchell AM,Konovalova A,Grabowicz M,Sheng J,Han X,Rodriguez-Rivera FP,Schwaid AG,Malinverni JC,Balibar CJ,Bodea S,Si Q,Wang H,Homsher MF,Painter RE,Ogawa AK,Sutterlin H,Roemer T,Black TA,Rothman DM,Walker

更新日期：2019-10-22 00:00:00

abstract：:Many nearshore fish and invertebrate populations are overexploited even when apparently coherent management structures are in place. One potential cause of mismanagement may be a poor understanding and accounting of stochasticity, particularly for stock recruitment. Many of the fishes and invertebrates that comprise n...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Siegel DA,Mitarai S,Costello CJ,Gaines SD,Kendall BE,Warner RR,Winters KB

更新日期：2008-07-01 00:00:00

abstract：:We demonstrate that individual cells infected with and expressing a recombinant retrovirus carrying the Escherichia coli beta-galactosidase gene (lacZ) can be viably stained, analyzed, sorted, and cloned by fluorescence-activated cell sorting based on the levels of lacZ expressed. To accomplish this we have devised a ...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Nolan GP,Fiering S,Nicolas JF,Herzenberg LA

更新日期：1988-04-01 00:00:00

abstract：:Because of the insolubility and polymeric properties of amyloid fibrils, techniques used conventionally to analyze protein structure and dynamics have often been hampered. Ultrasonication can induce the monomeric solution of amyloidogenic proteins to form amyloid fibrils. However, ultrasonication can break down prefor...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Chatani E,Lee YH,Yagi H,Yoshimura Y,Naiki H,Goto Y

更新日期：2009-07-07 00:00:00

abstract：:Fusions of the lac operon to genes induced by treatment with sublethal levels of alkylating agents have been selected from random insertions of the Mu-dl(ApRlac) phage by screening for induction of beta-galactosidase activity in the presence of methyl methanesulfonate. Genetic analysis reveals that these fusions resul...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Volkert MR,Nguyen DC

更新日期：1984-07-01 00:00:00

abstract：:We examined the origins and functional evolution of the Shaker and KCNQ families of voltage-gated K(+) channels to better understand how neuronal excitability evolved. In bilaterians, the Shaker family consists of four functionally distinct gene families (Shaker, Shab, Shal, and Shaw) that share a subunit structure co...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Li X,Liu H,Chu Luo J,Rhodes SA,Trigg LM,van Rossum DB,Anishkin A,Diatta FH,Sassic JK,Simmons DK,Kamel B,Medina M,Martindale MQ,Jegla T

更新日期：2015-03-03 00:00:00

abstract：:A labile selenium donor compound monoselenophosphate is synthesized from selenide and ATP by selenophosphate synthetase (SPS). In the present study, Sps1 and Sps2 were cloned from a cDNA library prepared from human lung adenocarcinoma cells (NCIH441). The human lung Sps1 has been cloned as an ORF of 1,179 bp, identica...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Tamura T,Yamamoto S,Takahata M,Sakaguchi H,Tanaka H,Stadtman TC,Inagaki K

更新日期：2004-11-16 00:00:00