Evolutionary relationships and systematics of the alphaviruses.

Abstract:

:Partial E1 envelope glycoprotein gene sequences and complete structural polyprotein sequences were used to compare divergence and construct phylogenetic trees for the genus Alphavirus. Tree topologies indicated that the mosquito-borne alphaviruses could have arisen in either the Old or the New World, with at least two transoceanic introductions to account for their current distribution. The time frame for alphavirus diversification could not be estimated because maximum-likelihood analyses indicated that the nucleotide substitution rate varies considerably across sites within the genome. While most trees showed evolutionary relationships consistent with current antigenic complexes and species, several changes to the current classification are proposed. The recently identified fish alphaviruses salmon pancreas disease virus and sleeping disease virus appear to be variants or subtypes of a new alphavirus species. Southern elephant seal virus is also a new alphavirus distantly related to all of the others analyzed. Tonate virus and Venezuelan equine encephalitis virus strain 78V3531 also appear to be distinct alphavirus species based on genetic, antigenic, and ecological criteria. Trocara virus, isolated from mosquitoes in Brazil and Peru, also represents a new species and probably a new alphavirus complex.

journal_name

J Virol

journal_title

Journal of virology

authors

Powers AM,Brault AC,Shirako Y,Strauss EG,Kang W,Strauss JH,Weaver SC

doi

10.1128/JVI.75.21.10118-10131.2001

subject

Has Abstract

pub_date

2001-11-01 00:00:00

pages

10118-31

issue

21

eissn

0022-538X

issn

1098-5514

journal_volume

75

pub_type

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