Long-distance base pairing in flock house virus RNA1 regulates subgenomic RNA3 synthesis and RNA2 replication.

Abstract:

:Replication of flock house virus (FHV) RNA1 and production of subgenomic RNA3 in the yeast Saccharomyces cerevisiae provide a useful tool for the dissection of FHV molecular biology and host-encoded functions involved in RNA replication. The replication template activity of RNA1 can be separated from its coding potential by supplying the RNA1-encoded replication factor protein A in trans. We constructed a trans-replication system in yeast to examine cis-acting elements in RNA1 that control RNA3 production, as well as RNA1 and RNA2 replication. Two cis elements controlling RNA3 production were found. A proximal subgenomic control element was located just upstream of the RNA3 start site (nucleotides [nt] 2282 to 2777). A short distal element also controlling RNA3 production (distal subgenomic control element) was identified 1.5 kb upstream, at nt 1229 to 1239. Base pairing between these distal and proximal elements was shown to be essential for RNA3 production by covariation analysis and in vivo selection of RNA3-expressing replicons from plasmid libraries containing random sequences in the distal element. Two distinct RNA1 replication elements (RE) were mapped within the 3' quarter of RNA1: the intRE (nt 2322 to 2501) and the 3'RE (nt 2735 to 3011). The 3'RE significantly overlaps the RNA3 region in RNA1, and this information was applied to produce improved RNA3-based vectors for foreign-gene expression. In addition, replication of an RNA2 derivative was dependent on RNA1 templates capable of forming the long-distance interaction that controls RNA3 production.

journal_name

J Virol

journal_title

Journal of virology

authors

Lindenbach BD,Sgro JY,Ahlquist P

doi

10.1128/jvi.76.8.3905-3919.2002

subject

Has Abstract

pub_date

2002-04-01 00:00:00

pages

3905-19

issue

8

eissn

0022-538X

issn

1098-5514

journal_volume

76

pub_type

杂志文章
  • Genetic differences between blood- and brain-derived viral sequences from human immunodeficiency virus type 1-infected patients: evidence of conserved elements in the V3 region of the envelope protein of brain-derived sequences.

    abstract::Human immunodeficiency virus type 1 (HIV-1) sequences were generated from blood and from brain tissue obtained by stereotactic biopsy from six patients undergoing a diagnostic neurosurgical procedure. Proviral DNA was directly amplified by nested PCR, and 8 to 36 clones from each sample were sequenced. Phylogenetic an...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.68.11.7467-7481.1994

    authors: Korber BT,Kunstman KJ,Patterson BK,Furtado M,McEvilly MM,Levy R,Wolinsky SM

    更新日期:1994-11-01 00:00:00

  • Identification of sequences important in the nucleolar localization of human immunodeficiency virus Rev: relevance of nucleolar localization to function.

    abstract::The human immunodeficiency virus rev gene product regulates the expression of viral structural genes. It was recently shown that Rev regulates the export of viral structural mRNAs from the nucleus to the cytoplasm. Analysis of Rev subcellular localization reveals marked accumulation in the nucleolus, suggesting a role...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.64.2.881-885.1990

    authors: Cochrane AW,Perkins A,Rosen CA

    更新日期:1990-02-01 00:00:00

  • L protein requirement for in vitro RNA synthesis by vesicular stomatitis virus.

    abstract::The endogenous transcriptase present in purified vesicular stomatitis (VS) virions was solubilized with a Triton X-100 high-salt solution. The polymerase activity was purified on glycerol gradients and by phosphocellulose column chromatography; the viral proteins present in the active enzyme fractions were identified ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.12.6.1325-1335.1973

    authors: Emerson SU,Wagner RR

    更新日期:1973-12-01 00:00:00

  • Differential response of type C and intracisternal type A particle markers in cells treated with iododeoxyuridine and dexamethasone.

    abstract::Mouse neuroblastoma cells containing intracisternal type A particles were treated with iododeoxyuridine and dexamethasone to induce the release of type C oncornavirus particles. For 5 days after treatment, antigenic markers and DNA polymerase activities specific to particles of each of the two types were assayed in th...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.19.2.709-716.1976

    authors: Kuff EL,Lueders KK,Orenstein JM,Wilson SH

    更新日期:1976-08-01 00:00:00

  • Human immunodeficiency virus type 1 Vpr arrests the cell cycle in G2 by inhibiting the activation of p34cdc2-cyclin B.

    abstract::Human immunodeficiency virus type 1 (HIV-1) vpr inhibits the replication of tumor cell lines and peripheral blood mononuclear cells. Here it is demonstrated that expression of vpr, either in the context of a provirus or from an independent genetic element, induces a discrete cell cycle arrest, with cells containing 4N...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.69.11.6859-6864.1995

    authors: Re F,Braaten D,Franke EK,Luban J

    更新日期:1995-11-01 00:00:00

  • Sterol regulatory element-binding protein 2 couples HIV-1 transcription to cholesterol homeostasis and T cell activation.

    abstract::Cholesterol plays an essential role in the life cycle of several enveloped viruses. Many of these viruses manipulate host cholesterol metabolism to facilitate their replication. HIV-1 infection of CD4(+) T cells activates the sterol regulatory element-binding protein 2 (SREBP2) transcriptional program, which includes ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00337-11

    authors: Taylor HE,Linde ME,Khatua AK,Popik W,Hildreth JE

    更新日期:2011-08-01 00:00:00

  • Nonpathogenesis of simian immunodeficiency virus infection is associated with reduced inflammation and recruitment of plasmacytoid dendritic cells to lymph nodes, not to lack of an interferon type I response, during the acute phase.

    abstract::Divergent Toll-like receptor 7 (TLR7) and TLR9 signaling has been proposed to distinguish pathogenic from nonpathogenic simian immunodeficiency virus infection in primate models. We demonstrate here that increased expression of type I interferon in pathogenic rhesus macaques compared to nonpathogenic African green mon...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01496-09

    authors: Campillo-Gimenez L,Laforge M,Fay M,Brussel A,Cumont MC,Monceaux V,Diop O,Lévy Y,Hurtrel B,Zaunders J,Corbeil J,Elbim C,Estaquier J

    更新日期:2010-02-01 00:00:00

  • Unseasonal transmission of H3N2 influenza A virus during the swine-origin H1N1 pandemic.

    abstract::The initial wave of swine-origin influenza A virus (pandemic H1N1/09) in the United States during the spring and summer of 2009 also resulted in an increased vigilance and sampling of seasonal influenza viruses (H1N1 and H3N2), even though they are normally characterized by very low incidence outside of the winter mon...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00018-10

    authors: Ghedin E,Wentworth DE,Halpin RA,Lin X,Bera J,DePasse J,Fitch A,Griesemer S,Hine E,Katzel DA,Overton L,Proudfoot K,Sitz J,Szczypinski B,StGeorge K,Spiro DJ,Holmes EC

    更新日期:2010-06-01 00:00:00

  • Molecular cloning of a family of retroviral sequences found in chimpanzee but not human DNA.

    abstract::A number of retrovirus-like sequences have been cloned from chimpanzee DNA which constitute the chimpanzee homologs of the endogenous colobus type C virus CPC-1. One of the clones contains a nearly complete viral genome, but others have sustained deletions of 1 to 2 kilobases in the polymerase gene. The pattern of rel...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.43.3.914-924.1982

    authors: Bonner TI,Birkenmeier EH,Gonda MA,Mark GE,Searfoss GH,Todaro GJ

    更新日期:1982-09-01 00:00:00

  • Kinetics of recombinant adeno-associated virus-mediated gene transfer.

    abstract::Recombinant adeno-associated virus (rAAV) vectors have been shown to be useful for efficient gene delivery to a variety of dividing and nondividing cells. Mechanisms responsible for the long-term, persistent expression of the rAAV transgene are not well understood. In this study we investigated the kinetics of rAAV-me...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.74.8.3555-3565.2000

    authors: Malik AK,Monahan PE,Allen DL,Chen BG,Samulski RJ,Kurachi K

    更新日期:2000-04-01 00:00:00

  • Epstein-Barr virus nuclear antigen 2 activates transcription of the terminal protein gene.

    abstract::Transcription of the terminal protein (TP) gene of Epstein-Barr virus (EBV) in Burkitt's lymphoma cells, in EBV-negative Burkitt's lymphoma cells converted with transformation-defective (P3HR1) and transformation-competent (B95-8, AG876) EBV strains, and in EBV-immortalized cell lines was studied. A TP1 cDNA probe spa...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.65.1.415-423.1991

    authors: Zimber-Strobl U,Suentzenich KO,Laux G,Eick D,Cordier M,Calender A,Billaud M,Lenoir GM,Bornkamm GW

    更新日期:1991-01-01 00:00:00

  • Exploring the Balance between DNA Pressure and Capsid Stability in Herpesviruses and Phages.

    abstract:UNLABELLED:We have recently shown in both herpesviruses and phages that packaged viral DNA creates a pressure of tens of atmospheres pushing against the interior capsid wall. For the first time, using differential scanning microcalorimetry, we directly measured the energy powering the release of pressurized DNA from th...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01172-15

    authors: Bauer DW,Li D,Huffman J,Homa FL,Wilson K,Leavitt JC,Casjens SR,Baines J,Evilevitch A

    更新日期:2015-09-01 00:00:00

  • Mapping of B-cell epitopes on the polypeptide chain of the Epstein-Barr virus major envelope glycoprotein and candidate vaccine molecule gp340.

    abstract::The Epstein-Barr virus (EBV) major envelope glycoprotein gp340 is the subject of current efforts to develop an EBV subunit vaccine. The importance of gp340-specific humoral immunity has been highlighted by studies of natural infection in humans and gp340 immunization of experimental animals. The former studies have de...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.66.2.1246-1251.1992

    authors: Pither RJ,Zhang CX,Shiels C,Tarlton J,Finerty S,Morgan AJ

    更新日期:1992-02-01 00:00:00

  • Mechanism of reduced T-cell effector functions and class-switched antibody responses to herpes simplex virus type 2 in the absence of B7 costimulation.

    abstract::T-cell costimulation molecules B7-1 and B7-2 play an important role in activation of T cells to cytolytic effector function and production of cytokines. Interaction with B7 also causes T cells to upregulate surface molecules, such as CD40L, that effectively stimulate antibody responses in conjunction with cytokines. W...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.77.4.2426-2435.2003

    authors: Thebeau LG,Morrison LA

    更新日期:2003-02-01 00:00:00

  • Clade-specific differences between human immunodeficiency virus type 1 clades B and C: diversity and correlations in C3-V4 regions of gp120.

    abstract::Current knowledge of human immunodeficiency virus type 1 envelope (Env) glycoprotein structure and function is based on studies of clade B viruses. We present evidence of sequence and structural differences in viral glycoprotein gp120 between clades B and C. In clade C, the C3 region alpha2-helix exhibits high sequenc...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01954-06

    authors: Gnanakaran S,Lang D,Daniels M,Bhattacharya T,Derdeyn CA,Korber B

    更新日期:2007-05-01 00:00:00

  • Evidence for pH-dependent protease activity in the adeno-associated virus capsid.

    abstract::Incubation of highly purified adeno-associated virus (AAV) capsids in vitro at pH 5.5 induced significant autocleavage of capsid proteins at several amino acid positions. No autocleavage was seen at pH 7.5. Examination of other AAV serotypes showed at least two different pH-induced cleavage patterns, suggesting that d...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01717-12

    authors: Salganik M,Venkatakrishnan B,Bennett A,Lins B,Yarbrough J,Muzyczka N,Agbandje-McKenna M,McKenna R

    更新日期:2012-11-01 00:00:00

  • Blockade of PD-1 and LAG-3 Immune Checkpoints Combined with Vaccination Restores the Function of Antiviral Tissue-Resident CD8+ TRM Cells and Reduces Ocular Herpes Simplex Infection and Disease in HLA Transgenic Rabbits.

    abstract::Chronic viruses such as herpes simplex virus 1 (HSV-1) evade the hosts' immune system by inducing the exhaustion of antiviral T cells. In the present study, we found that exhausted HSV-specific CD8+ T cells, with elevated expression of programmed death ligand-1 (PD-1) and lymphocyte activation gene-3 (LAG-3) receptors...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00827-19

    authors: Roy S,Coulon PG,Prakash S,Srivastava R,Geertsema R,Dhanushkodi N,Lam C,Nguyen V,Gorospe E,Nguyen AM,Salazar S,Alomari NI,Warsi WR,BenMohamed L

    更新日期:2019-08-28 00:00:00

  • Conserved epitopes on the hemagglutinin-neuraminidase proteins of human and bovine parainfluenza type 3 viruses: nucleotide sequence analysis of variants selected with monoclonal antibodies.

    abstract::We have previously identified 11 epitopes located in two topologically nonoverlapping antigenic sites (A and B) and a third bridging site (C) on the human type 3 parainfluenza virus (PIV3) hemagglutinin-neuraminidase (HN) glycoprotein by using monoclonal antibodies (MAbs) which inhibit hemagglutination and virus infec...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.60.1.90-96.1986

    authors: Coelingh KJ,Winter CC,Murphy BR,Rice JM,Kimball PC,Olmsted RA,Collins PL

    更新日期:1986-10-01 00:00:00

  • Unusual Sp1-GC box interaction in a parvovirus promoter.

    abstract::The P4 promoter of the parvovirus minute virus of mice contains a single degenerate GC box sequence which binds the transcription factor Sp1 with high affinity. The two promoters of murine Sp1 were affinity purified, and their interactions with the P4 promoter were examined. Several unusual features were observed. Met...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.65.12.6661-6670.1991

    authors: Pitluk ZW,Ward DC

    更新日期:1991-12-01 00:00:00

  • Viral DNA-Dependent Induction of Innate Immune Response to Hepatitis B Virus in Immortalized Mouse Hepatocytes.

    abstract:UNLABELLED:Hepatitis B virus (HBV) infects hundreds of millions of people worldwide and causes acute and chronic hepatitis, cirrhosis, and hepatocellular carcinoma. HBV is an enveloped virus with a relaxed circular (RC) DNA genome. In the nuclei of infected human hepatocytes, conversion of RC DNA from the incoming viri...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01263-15

    authors: Cui X,Clark DN,Liu K,Xu XD,Guo JT,Hu J

    更新日期:2015-10-21 00:00:00

  • Human T-cell leukemia virus type 2 Rex protein increases stability and promotes nuclear to cytoplasmic transport of gag/pol and env RNAs.

    abstract::The human T-cell leukemia virus (HTLV) Rex protein is essential for efficient expression of the viral structural and enzymatic gene products. In this study, we assessed the role of the HTLV-2 rex gene in viral RNA expression and Gag protein production. Following transfection of human JM4 T cells with wild-type and rex...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.73.10.8112-8119.1999

    authors: Kusuhara K,Anderson M,Pettiford SM,Green PL

    更新日期:1999-10-01 00:00:00

  • Adeno-associated virus type 2-mediated gene transfer: role of cellular FKBP52 protein in transgene expression.

    abstract::Although adeno-associated virus type 2 (AAV) has gained attention as a potentially useful vector for human gene therapy, the transduction efficiencies of AAV vectors vary greatly in different cells and tissues in vitro and in vivo. We have documented that a cellular tyrosine phosphoprotein, designated the single-stran...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.75.19.8968-8976.2001

    authors: Qing K,Hansen J,Weigel-Kelley KA,Tan M,Zhou S,Srivastava A

    更新日期:2001-10-01 00:00:00

  • Differential effects on cell fusion activity of mutations in herpes simplex virus 1 glycoprotein B (gB) dependent on whether a gD receptor or a gB receptor is overexpressed.

    abstract::Glycoprotein B (gB) of herpes simplex virus (HSV) is one of four glycoproteins essential for viral entry and cell fusion. Recently, paired immunoglobulin-like type 2 receptor (PILRalpha) was identified as a receptor for HSV type 1 (HSV-1) gB. Both PILRalpha and a gD receptor were shown to participate in HSV-1 entry in...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00087-09

    authors: Fan Q,Lin E,Satoh T,Arase H,Spear PG

    更新日期:2009-08-01 00:00:00

  • Naturally occurring TAP-dependent specific T-cell tolerance for a variant of an immunodominant retroviral cytotoxic T-lymphocyte epitope.

    abstract::Upon immunization and restimulation with tumors induced by the endogenous AKR/Gross murine leukemia virus (MuLV), C57BL/6 mice generate vigorous H-2K(b)-restricted cytotoxic T-lymphocyte (CTL) responses to a determinant (KSPWFTTL) derived from the p15E transmembrane portion of the viral envelope glycoprotein. By contr...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.74.8.3924-3928.2000

    authors: Kim V,Yewdell JW,Green WR

    更新日期:2000-04-01 00:00:00

  • A Single Mutation at Position 190 in Hemagglutinin Enhances Binding Affinity for Human Type Sialic Acid Receptor and Replication of H9N2 Avian Influenza Virus in Mice.

    abstract::H9N2 avian influenza virus (AIV) has an extended host range, but the molecular basis underlying H9N2 AIV transmission to mammals remains unclear. We isolated more than 900 H9N2 AIVs in our 3-year surveillance in live bird markets in China from 2009 to 2012. Thirty-seven representative isolates were selected for furthe...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01141-16

    authors: Teng Q,Xu D,Shen W,Liu Q,Rong G,Li X,Yan L,Yang J,Chen H,Yu H,Ma W,Li Z

    更新日期:2016-10-14 00:00:00

  • Integrins alpha2beta1 and alpha4beta1 can mediate SA11 rotavirus attachment and entry into cells.

    abstract::Most mammalian rotaviruses contain tripeptide amino acid sequences in outer capsid proteins VP4 and VP7 which have been shown to act as ligands for integrins alpha2beta1 and alpha4beta1. Peptides containing these sequences and monoclonal antibodies directed to these integrins block rotavirus infection of cells. Here w...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.74.1.228-236.2000

    authors: Hewish MJ,Takada Y,Coulson BS

    更新日期:2000-01-01 00:00:00

  • Cloning and characterization of herpes simplex virus type 1 oriL: comparison of replication and protein-DNA complex formation by oriL and oriS.

    abstract::The herpes simplex virus type 1 genome contains three origins of DNA replication: two copies of oriS and one copy of oriL. Although oriS has been characterized extensively, characterization of oriL has been severely limited by the inability to amplify oriL sequences in an undeleted form in Escherichia coli. We report ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.69.3.1377-1388.1995

    authors: Hardwicke MA,Schaffer PA

    更新日期:1995-03-01 00:00:00

  • Adenovirus vector expressing functional herpes simplex virus ICP0.

    abstract::ICP0, one of the five immediate-early (IE) gene products of herpes simplex virus (HSV), is a potent activator of transcription. To assess the biological activities of ICP0 and to explore its mechanisms of action, two helper-independent recombinant adenoviruses were constructed. In each recombinant, the E1 region was s...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.62.12.4544-4553.1988

    authors: Zhu XX,Young CS,Silverstein S

    更新日期:1988-12-01 00:00:00

  • Specific interactions of HeLa cell proteins with proposed translation domains of the poliovirus 5' noncoding region.

    abstract::To determine which sequences or structures in the poliovirus 5' noncoding region (5'NCR) are involved in binding proteins used for internal ribosome binding and protein synthesis initiation, translation competition assays were performed in rabbit reticulocyte lysates in the presence and absence of HeLa cell extract. T...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.66.5.3101-3109.1992

    authors: Gebhard JR,Ehrenfeld E

    更新日期:1992-05-01 00:00:00

  • Strain specificity and binding affinity requirements of neutralizing monoclonal antibodies to the C4 domain of gp120 from human immunodeficiency virus type 1.

    abstract::The binding properties of seven CD4-blocking monoclonal antibodies raised against recombinant gp120 of human immunodeficiency virus type 1 strain MN (HIV-1MN) and two CD4-blocking monoclonal antibodies to recombinant envelope glycoproteins gp120 and gp160 of substrain IIIB of HIVLAI were analyzed. With a panel of reco...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.67.10.6179-6191.1993

    authors: Nakamura GR,Byrn R,Wilkes DM,Fox JA,Hobbs MR,Hastings R,Wessling HC,Norcross MA,Fendly BM,Berman PW

    更新日期:1993-10-01 00:00:00