Clade-specific differences between human immunodeficiency virus type 1 clades B and C: diversity and correlations in C3-V4 regions of gp120.

Abstract:

:Current knowledge of human immunodeficiency virus type 1 envelope (Env) glycoprotein structure and function is based on studies of clade B viruses. We present evidence of sequence and structural differences in viral glycoprotein gp120 between clades B and C. In clade C, the C3 region alpha2-helix exhibits high sequence entropy at the polar face but maintains its amphipathicity, whereas in clade B it accommodates hydrophobic residues. The V4 hypervariable domain in clade C is shorter than that in clade B. Generally, shorter V4 loops are incompatible with a glycine occurring in the alpha2-helix in clade C, an intriguing association that could be exploited to inform Env immunogen design.

journal_name

J Virol

journal_title

Journal of virology

authors

Gnanakaran S,Lang D,Daniels M,Bhattacharya T,Derdeyn CA,Korber B

doi

10.1128/JVI.01954-06

subject

Has Abstract

pub_date

2007-05-01 00:00:00

pages

4886-91

issue

9

eissn

0022-538X

issn

1098-5514

pii

JVI.01954-06

journal_volume

81

pub_type

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