Unseasonal transmission of H3N2 influenza A virus during the swine-origin H1N1 pandemic.

Abstract:

:The initial wave of swine-origin influenza A virus (pandemic H1N1/09) in the United States during the spring and summer of 2009 also resulted in an increased vigilance and sampling of seasonal influenza viruses (H1N1 and H3N2), even though they are normally characterized by very low incidence outside of the winter months. To explore the nature of virus evolution during this influenza "off-season," we conducted a phylogenetic analysis of H1N1 and H3N2 sequences sampled during April to June 2009 in New York State. Our analysis revealed that multiple lineages of both viruses were introduced and cocirculated during this time, as is typical of influenza virus during the winter. Strikingly, however, we also found strong evidence for the presence of a large transmission chain of H3N2 viruses centered on the south-east of New York State and which continued until at least 1 June 2009. These results suggest that the unseasonal transmission of influenza A viruses may be more widespread than is usually supposed.

journal_name

J Virol

journal_title

Journal of virology

authors

Ghedin E,Wentworth DE,Halpin RA,Lin X,Bera J,DePasse J,Fitch A,Griesemer S,Hine E,Katzel DA,Overton L,Proudfoot K,Sitz J,Szczypinski B,StGeorge K,Spiro DJ,Holmes EC

doi

10.1128/JVI.00018-10

subject

Has Abstract

pub_date

2010-06-01 00:00:00

pages

5715-8

issue

11

eissn

0022-538X

issn

1098-5514

pii

JVI.00018-10

journal_volume

84

pub_type

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