Functional roles of the invariant aspartic acid 55, tyrosine 306, and aspartic acid 309 in glucoamylase from Aspergillus awamori studied by mutagenesis.

Abstract:

:Three mutants, Asp55-Gly, Tyr306-->Phe, and Asp309-->Asn, of Aspergillus awamori glucoamylase (identical to Aspergillus niger glucoamylase) were constructed to elucidate the roles of two conserved regions within fungal glucoamylases. Kinetic studies indicate that both of these regions are closely associated with activity. The Asp55-->Gly mutation decreases the kcat approximately 200 times toward maltose and isomaltose, while KM values remain similar to the wild-type. This localizes Asp55 to subsite 1 of glucoamylase where it affects catalytic activity, but not ground-state binding. The pKa value of the catalytic general acid, Glu179, is 1 pH unit lower in that mutant compared to wild-type enzyme, confirming the proximity of Asp55 to the site of catalysis. Tyr306-->Phe is highly active, but affects binding in subsite 2. It moreover shows enhanced binding in the fourth subsite, suggesting that the conserved region around residue 306 interacts with Trp120, a critical residue that directs conformational changes stabilizing the transition-state structure. Finally, the Asp309-->Asn mutation decreases the kcat for isomaltose hydrolysis around 200-fold, but only 30-fold for maltose. This specific effect on the hydrolysis of the alpha-1,6-linked substrate locates Asp309 to subsite 2. Substitution of Asp309 influences affinities of distant subsites, especially subsite 4, similar to mutations of other carboxylic acid residues situated near subsites 1 and 2.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Sierks MR,Svensson B

doi

10.1021/bi00055a017

subject

Has Abstract

pub_date

1993-02-02 00:00:00

pages

1113-7

issue

4

eissn

0006-2960

issn

1520-4995

journal_volume

32

pub_type

杂志文章
  • Identification of the catalytic nucleophile of tRNA (m5U54)methyltransferase.

    abstract::A covalent complex between tRNA (m5U54)methyltransferase, 5-fluorouridine tRNA(Phe), and S-adenosyl-L-[methyl-3H]methionine was formed in vitro and purified. Previously, it was shown that in this complex the 6-position of fluorouridine-54 is covalently linked to a catalytic nucleophile and the 5-position is bound to t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00104a022

    authors: Kealey JT,Santi DV

    更新日期:1991-10-08 00:00:00

  • Structural studies on phophatidylcholine-cholesterol mixed vesicles.

    abstract::The homogeneous, single-walled phosphatidylcholine-cholesterol mixed vesicles were prepared by ultrasonic irradiation of egg phosphatidylcholine in the presence of various amounts of cholesterol in solution at 4 degrees under a nitrogen atmosphere followed by molecular sieve chromatography on a Sepharose 4B column. Ph...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00686a012

    authors: Newman GC,Huang C

    更新日期:1975-07-29 00:00:00

  • Molybdate-stabilized glucocorticoid receptor: evidence for a receptor heteromer.

    abstract::The composition of the molybdate-stabilized glucocorticoid receptor (GR) complex has been investigated with a monoclonal antibody against the steroid-binding Mr 94 000 (94K) GR protein. It was concluded that one antibody molecule binds one 94K GR molecule. This finding constituted the basis for calculating the number ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00344a041

    authors: Okret S,Wikström AC,Gustafsson JA

    更新日期:1985-11-05 00:00:00

  • Cofactor and substrate binding to vanadium chloroperoxidase determined by UV-VIS spectroscopy and evidence for high affinity for pervanadate.

    abstract::The vanadate cofactor in vanadium chloroperoxidase has been studied using UV-VIS absorption spectroscopy. A band is present in the near-UV that is red-shifted as compared to free vanadate and shifts in both position and intensity upon change in pH. Mutation of vanadate binding residues has a clear effect on the spectr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9921790

    authors: Renirie R,Hemrika W,Piersma SR,Wever R

    更新日期:2000-02-08 00:00:00

  • Urea Mimics Nucleobases by Preserving the Helical Integrity of B-DNA Duplexes via Hydrogen Bonding and Stacking Interactions.

    abstract::Urea lesions are formed in DNA because of free radical damage of the thymine base, and their occurrence in DNA blocks DNA polymerases, which has deleterious consequences. Recently, it has been shown that urea is capable of forming hydrogen bonding and stacking interactions with nucleobases, which are responsible for t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.6b00309

    authors: Suresh G,Padhi S,Patil I,Priyakumar UD

    更新日期:2016-10-11 00:00:00

  • Three small ribooligonucleotides with specific arginine sites.

    abstract::Arginine-binding RNA motifs are important to protein-RNA interaction and perhaps also for Archean biochemistry. Selection-amplification was used to isolate three RNAs that are eluted by free arginine from an L-arginine affinity column (Kd approximately 0.2-0.4 mM). The binding sites contain specific internal and bulge...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00072a002

    authors: Connell GJ,Illangesekare M,Yarus M

    更新日期:1993-06-01 00:00:00

  • Circular dichroism and UV resonance raman study of the impact of alcohols on the Gibbs free energy landscape of an alpha-helical peptide.

    abstract::We used CD and UV resonance Raman spectroscopy to study the impact of alcohols on the conformational equilibria and relative Gibbs free energy landscapes along the Ramachandran Psi-coordinate of a mainly poly-Ala peptide, AP with an AAAAA(AAARA)(3)A sequence. 2,2,2-Trifluoroethanol (TFE) most stabilizes the alpha-heli...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi100176a

    authors: Xiong K,Asher SA

    更新日期:2010-04-20 00:00:00

  • Preferential assembly of the tropomyosin heterodimer: equilibrium studies.

    abstract::Thermal unfolding/refolding studies of the three tropomyosin dimers, alpha alpha, alpha beta, and beta beta, from chicken gizzard muscle were performed to explain the preferential assembly of alpha- and beta-tropomyosin subunits into heterodimers, alpha beta [Lehrer, S. S., & Qian, Y. (1989) J. Biol. Chem. 265, 1134]....

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00237a007

    authors: Lehrer SS,Stafford WF 3rd

    更新日期:1991-06-11 00:00:00

  • Mechanistic and stereochemical studies of glycine oxidase from Bacillus subtilis strain R5.

    abstract::Glycine oxidase gene from a strain of Bacillus subtilis was cloned and expressed in Escherichia coli. The purified enzyme was found, by mass spectrometry, to have a protein M(r) of 40763 (value of 40761.6 predicted from DNA sequence) and a FAD prosthetic group M(r) of 785.1 (theoretical value of 785.5). Glycine oxidas...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi100553n

    authors: Jamil F,Gardner QA,Bashir Q,Rashid N,Akhtar M

    更新日期:2010-08-31 00:00:00

  • Unique Alzheimer's disease paired helical filament specific epitopes involve double phosphorylation at specific sites.

    abstract::Alzheimer's disease (AD) paired helical filaments (PHFs), building blocks of neurofibrillary tangles (NFTs) are composed of hyperphosphorylated forms of the microtubule-associated protein tau (i.e., PHF-tau). Currently, much effort is devoted to the development of diagnostic antibodies specific for PHF-tau since eleva...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi970380+

    authors: Hoffmann R,Lee VM,Leight S,Varga I,Otvos L Jr

    更新日期:1997-07-01 00:00:00

  • Three-dimensional solution structure and 13C nuclear magnetic resonance assignments of the colicin E9 immunity protein Im9.

    abstract::The 86-amino acid colicin E9 immunity protein (Im9), which inhibits the DNase activity of colicin E9, has been overexpressed in Escherichia coli and isotopically enriched with 15N and 13C. Using the 3D CBCANH and CBCA(CO)NH experiments, we have almost completely assigned the backbone 13C resonances and extended previo...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi960401k

    authors: Osborne MJ,Breeze AL,Lian LY,Reilly A,James R,Kleanthous C,Moore GR

    更新日期:1996-07-23 00:00:00

  • Thrombospondin-1 and angiotensin II inhibit soluble guanylyl cyclase through an increase in intracellular calcium concentration.

    abstract::Nitric oxide (NO) regulates cardiovascular hemostasis by binding to soluble guanylyl cyclase (sGC), leading to cGMP production, reduced cytosolic calcium concentration ([Ca(2+)](i)), and vasorelaxation. Thrombospondin-1 (TSP-1), a secreted matricellular protein, was recently discovered to inhibit NO signaling and sGC ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi201060c

    authors: Ramanathan S,Mazzalupo S,Boitano S,Montfort WR

    更新日期:2011-09-13 00:00:00

  • Conserved phosphoprotein interaction motif is functionally interchangeable between ataxin-7 and arrestins.

    abstract::Olivopontocerebellar atrophy with retinal degeneration is a hereditary neurodegenerative disorder that belongs to the subtype II of the autosomal dominant cerebellar ataxias and is characterized by early-onset cerebellar and macular degeneration preceded by diagnostically useful tritan colorblindness. The gene mutated...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi992694y

    authors: Mushegian AR,Vishnivetskiy SA,Gurevich VV

    更新日期:2000-06-13 00:00:00

  • Electron spin echo modulation and nuclear relaxation studies of staphylococcal nuclease and its metal-coordinating mutants.

    abstract::Electron spin echo envelope modulation (ESEEM) spectroscopy has been applied to the determination of the number of water molecules coordinated to the metal in the binary complex of staphylococcal nuclease with Mn2+, to the ternary enzyme-Mn2+-3',5'-pdTp complex, and to ternary complexes of a number of mutant enzymes i...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00421a010

    authors: Serpersu EH,McCracken J,Peisach J,Mildvan AS

    更新日期:1988-10-18 00:00:00

  • Three-dimensional structure of p-cresol methylhydroxylase (flavocytochrome c) from Pseudomonas putida at 3.0-A resolution.

    abstract::p-Cresol methylhydroxylase (PCMH) isolated from Pseudomonas putida is an alpha 2 beta 2 tetramer of approximate subunit Mr 49,000 and 9,000. It is a flavocytochrome c containing covalently bound FAD in the larger subunit and covalently bound heme in the smaller. Crystals in space group P2(1)2(1)2(1) with unit-cell par...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00215a034

    authors: Mathews FS,Chen ZW,Bellamy HD,McIntire WS

    更新日期:1991-01-08 00:00:00

  • Purification and properties of squirrel monkey (Saimiri sciureus) corticosteroid binding globulin.

    abstract::Corticosteroid binding globulin (CBG), a serum glycoprotein which binds glucocorticoids and progestins with high affinity, is widely distributed throughout the animal world. Although its charge and size characteristics have largely been conserved across species, we found the behavior of CBG in squirrel monkey (Saimiri...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00407a046

    authors: Kuhn RW,VestWeber C,Siiteri PK

    更新日期:1988-04-05 00:00:00

  • Volumetrically Derived Thermodynamic Profile of Interactions of Urea with a Native Protein.

    abstract::We report the first experimental characterization of the full thermodynamic profile for binding of urea to a native protein. We measured the volumetric parameters of lysozyme at pH 7.0 as a function of urea within a temperature range of 18-45 °C. At neutral pH, lysozyme retains its native conformation between 0 and 8 ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.6b00805

    authors: Son I,Chalikian TV

    更新日期:2016-11-29 00:00:00

  • Transmembrane calcium movements mediated by ionomycin and phosphatidate in liposomes with Fura 2 entrapped.

    abstract::A novel liposomal method permits studies of Ca movements across the bilayers of multilamellar vesicles (MLV) which had entrapped the Ca-dependent, fluorescent indicator dye Fura 2. Ionomycin-mediated Ca translocation across MLV of phosphatidylcholine (PC)/dicetyl phosphate (DCP), 9:1, obeyed simple first-order kinetic...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00415a040

    authors: Blau L,Weissmann G

    更新日期:1988-07-26 00:00:00

  • Effects of site-directed mutations on heme reduction in Escherichia coli nitrate reductase A by menaquinol: a stopped-flow study.

    abstract::We have studied the effects of site-directed mutations in Escherichia coli nitrate reductase A (NarGHI) on heme reduction by a menaquinol analogue (menadiol) using the stopped-flow method. For NarGHI(H66Y) and NarGHI(H187Y), both lacking heme b(L) but having heme b(H), the heme reduction by menadiol is abolished. For ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0350856

    authors: Zhao Z,Rothery RA,Weiner JH

    更新日期:2003-12-09 00:00:00

  • Sugars Require Rigid Multivalent Displays for Activation of Mouse Sperm Acrosomal Exocytosis.

    abstract::As a prerequisite to mammalian fertilization, the sperm acrosomal vesicle fuses with the plasma membrane and the acrosome contents are exocytosed. Induction occurs through engagement of the sperm receptors by multiple sugar residues. Multivalent polymers displaying mannose, fucose, or GlcNAc are effective synthetic in...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.7b00166

    authors: Huang H,Rodolis MT,Bhatia SR,Sampson NS

    更新日期:2017-06-06 00:00:00

  • Exploring the cellulose/xylan specificity of the beta-1,4-glycanase cex from Cellulomonas fimi through crystallography and mutation.

    abstract::The retaining beta-1,4-glycanase Cex from Cellulomonas fimi, a family 10 glycosyl hydrolase, hydrolyzes xylan 40-fold more efficiently than cellulose. To gain insight into the nature of its preference for xylan, we determined the crystal structure of the Cex catalytic domain (Cex-cd) trapped as its covalent 2-deoxy-2-...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9729211

    authors: Notenboom V,Birsan C,Warren RA,Withers SG,Rose DR

    更新日期:1998-04-07 00:00:00

  • CofE catalyzes the addition of two glutamates to F420-0 in F420 coenzyme biosynthesis in Methanococcus jannaschii.

    abstract::The protein product of the Methanococcus jannaschii MJ0768 gene has been expressed in Escherichia coli, purified to homogeneity, and shown to catalyze the GTP-dependent addition of two l-glutamates to the l-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F(420)-0) to form F(420)-0-glutamyl-glutama...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi034779b

    authors: Li H,Graupner M,Xu H,White RH

    更新日期:2003-08-19 00:00:00

  • HO. and DNase I probing of E sigma 70 RNA polymerase--lambda PR promoter open complexes: Mg2+ binding and its structural consequences at the transcription start site.

    abstract::Chemical and enzymatic probing (footprinting) of the reactivity of the promoter DNA backbone is applied to characterize two binary open complexes RPo1 (-Mg2+) and RPo2 (+Mg2+), formed by Escherichia coli RNA polymerase (E sigma 70) at the lambda PR promoter. We report that HO. detects major differences in backbone rea...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00048a004

    authors: Craig ML,Suh WC,Record MT Jr

    更新日期:1995-12-05 00:00:00

  • Portability of epimerization domain and role of peptidyl carrier protein on epimerization activity in nonribosomal peptide synthetases.

    abstract::Incorporation of nonproteinogenic amino acids in small polypeptides synthesized by nonribosomal peptide synthetases (NRPS) significantly contributes to their biological activity. In these peptides, conversion of L-amino acids to the corresponding D-isomer is catalyzed by specialized NRPS modules that utilize an epimer...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi011595t

    authors: Linne U,Doekel S,Marahiel MA

    更新日期:2001-12-25 00:00:00

  • Effect of pH on the active site of an Arg121Cys mutant of the metallo-beta-lactamase from Bacillus cereus: implications for the enzyme mechanism.

    abstract::The zinc-dependent metallo-beta-lactamases are a group of bacterial enzymes that pose a threat to the future efficacy of present-day antibiotics. Their mechanism is poorly understood, and there are no clinically useful inhibitors. While most members of the group contain two tightly bound zinc ions in their active site...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi047709t

    authors: Davies AM,Rasia RM,Vila AJ,Sutton BJ,Fabiane SM

    更新日期:2005-03-29 00:00:00

  • Oxidative inactivation of a charge transfer complex in the medium-chain acyl-CoA dehydrogenase.

    abstract::The intense charge transfer complex between the enolate of 3-thia-octanoyl-CoA and the oxidized flavin of the medium-chain acyl-CoA dehydrogenase is discharged by the ferricenium ion with irreversible inactivation of the enzyme. Charge transfer complex formation is a necessary, but insufficient, condition for oxidativ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00050a025

    authors: Schaller RA,Thorpe C

    更新日期:1995-12-19 00:00:00

  • Fluorescence-detected circular dichroism of ethidium in vivo and bound to deoxyribonucleic acid in vitro.

    abstract::Fluorescence-detected circular dichroism (FDCD) spectra are reported for ethidium in Escherichia coli cells and bound to E. coli DNA in vitro. FDCD bands are observed at 325 and 385 nm. These bands change amplitude as the ethidium to DNA ratio changes. Spectra are similar for in vivo and in vitro measurements. However...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00333a001

    authors: Lamos ML,Turner DH

    更新日期:1985-06-04 00:00:00

  • Carboxylases in de novo purine biosynthesis. Characterization of the Gallus gallus bifunctional enzyme.

    abstract::Two successive steps in de novo purine biosynthesis are catalyzed by the enzymes 5-aminoimidazole ribonucleotide (AIR) carboxylase and 4-[(N-succinylamino)carbonyl]-5-aminoimidazole ribonucleotide (SAICAR) synthetase. Amino acid sequence alignments of the proteins from various sources suggested that several unusual di...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00205a030

    authors: Firestine SM,Davisson VJ

    更新日期:1994-10-04 00:00:00

  • Transcriptional regulation of the nuclear gene encoding the alpha-subunit of the mammalian mitochondrial F1F0 ATP synthase complex: role for the orphan nuclear receptor, COUP-TFII/ARP-1.

    abstract::Our laboratory has been studying the transcriptional regulation of the nuclear gene (ATPA) that encodes the alpha-subunit of the mammalian mitochondrial F1F0 ATP synthase complex. We have previously determined that the regulatory factor, upstream stimulatory factor 2 (USF2), can stimulate transcription of the ATPA gen...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0268347

    authors: Jordan EM,Worley T,Breen GA

    更新日期:2003-03-11 00:00:00

  • Structures of the cuprous-thiolate clusters of the Mac1 and Ace1 transcriptional activators.

    abstract::X-ray absorption spectroscopy on the minimal copper-regulatory domains of the two copper-regulated transcription factors (Ace1 and Mac1) in Saccharomyces cerevisiae revealed the presence of a remarkably similar polycopper cluster in both proteins. The Cu-regulatory switch motif of Mac1 consisting of the C-terminal fir...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0160664

    authors: Brown KR,Keller GL,Pickering IJ,Harris HH,George GN,Winge DR

    更新日期:2002-05-21 00:00:00