Techniques in plant telomere biology.

Abstract:

:The role model systems have played in understanding telomere biology has been enormous, and understanding has rapidly transferred to human telomere research. Most work using model organisms to study telomerase and nontelomerase-based telomere-maintenance systems has centered on yeasts, ciliates, and insects. But it is now timely to put considerably more effort into plant models for a number of reasons: (i) the rice and Arabidopsis genome sequencing projects make data mining possible; (ii) extensive collections of insertion mutants of Arabidopsis thaliana enable phenotypic effects of protein gene knockouts to be analyzed, including for those genes involved in telomere structure, function (including, for example, in meiosis), and maintenance; and (iii) the variability of plant telomeres is considerable and ranges from the telomerase-mediated synthesis of the Arabidopsis-type (TTTAGGG) and vertebrate-type (TTAGGG) repeats to sequences synthesized by telomerase-independent mechanism(s) that are still to be discovered. Here we describe how the understanding of telomere biology has been advanced by methods used to isolate telomeric sequences and prove that the putative sequences isolated are indeed telomeric. We show how assays designed to prove the activity of telomerase [e.g., telomeric repeat amplification protocol (TRAP)] lead not only to an understanding of telomere structure and function, but also to the understanding of cell activity in development and in the cell cycle. We review how assays designed to reveal protein/protein and protein/nucleic acid interactions promote understanding of the structure and activities of plant telomeres. Together, the data are making significant contributions to telomere biology in general and could have medical implications.

journal_name

Biotechniques

journal_title

BioTechniques

authors

Fajkus J,Sýkorová E,Leitch AR

doi

10.2144/05382RV01

subject

Has Abstract

pub_date

2005-02-01 00:00:00

pages

233-43

issue

2

eissn

0736-6205

issn

1940-9818

pii

05382RV01

journal_volume

38

pub_type

杂志文章,评审
  • Rapid genetic screening for hemochromatosis using automated SSCP-based capillary electrophoresis (SSCP-CE).

    abstract::Hereditary hemochromatosis (HHC) represents an autosomal recessive disease in which increased iron absorption causes iron overload and irreversible tissue damage. The recently detected association between two point mutations in the HFE gene on chromosome 6p and HHC has made it possible to screen for the disease before...

    journal_title:BioTechniques

    pub_type:

    doi:10.2144/99266st02

    authors: Bosserhoff AK,Seegers S,Hellerbrand C,Schölmerich J,Büttner R

    更新日期:1999-06-01 00:00:00

  • An assay for small scale screening of candidate β cell proliferative factors using intact islets.

    abstract::Current protocols for screening proliferative factors for β cells ex vivo are time-consuming, require cell lines or dissociated islets, and often entail expensive specialized screening equipment. Here we present an efficient and lower cost alternative that utilizes intact mouse islets for the initial screening of prol...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/000114115

    authors: Mosser RE,Gannon M

    更新日期:2013-12-01 00:00:00

  • Simplified DGS procedure for large-scale genome structural study.

    abstract::Ditag genome scanning (DGS) uses next-generation DNA sequencing to sequence the ends of ditag fragments produced by restriction enzymes. These sequences are compared to known genome sequences to determine their structure. In order to use DGS for large-scale genome structural studies, we have substantially revised the ...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/000113294

    authors: Jung YC,Xu J,Chen J,Kim Y,Winchester D,Wang SM

    更新日期:2009-11-01 00:00:00

  • siRNA cell arrays for high-content screening microscopy.

    abstract::RNA interference (RNAi) is a recent advance that provides the possibility to reduce the expression of specific target genes in cultured mammalian cells with potential applications on a genome-wide scale. However, to achieve this, robust methodologies that allow automated and efficient delivery of small interfering RNA...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/04373RT01

    authors: Erfle H,Simpson JC,Bastiaens PI,Pepperkok R

    更新日期:2004-09-01 00:00:00

  • Antibody-mediated soluble CD14 stabilization prevents agitation-induced increases in presepsin levels in blood component specimens.

    abstract::Presepsin is a 13-kDa N-terminal glycoprotein of CD14. Previously, agitation-induced increases in presepsin levels have been reported; however, the mechanism remains poorly understood. In this study, we aimed to reveal the mechanism of presepsin increase. The agitated plasma or serum was separated using gel exclusion ...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/btn-2020-0136

    authors: Morino G,Takahashi G,Kan S,Inoue Y,Sato K,Shirakawa K

    更新日期:2021-01-29 00:00:00

  • Minimally invasive method for murine brain fixation.

    abstract::Complete brain fixation can be achieved with transthoracic cardiac infusion without thoracotomy. Light and electron microscopy tissue sections reveal preservation of cytoplasmic and nuclear structure at all magnification levels. Punched samples were obtained from the fixed tissue specimens in precisely localized areas...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/000112003

    authors: Eichenbaum KD,Eichenbaum JW,Fadiel A,Miller DC,Demir N,Naftolin F,Stern A,Pevsner PH

    更新日期:2005-10-01 00:00:00

  • Reliable titration of filamentous bacteriophages independent of pIII fusion moiety and genome size by using trypsin to restore wild-type pIII phenotype.

    abstract::Phage display holds a key position in the use of combinatorial library approaches for the purpose of protein engineering and discovery. However, modifying the pIII protein of the phage can severely and negatively influence the infectiousness of the phage particle. This concern is particularly relevant when large pIII ...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/000112724

    authors: Løset GÅ,Kristinsson SG,Sandlie I

    更新日期:2008-04-01 00:00:00

  • DIRECTING DRUG EVOLUTION.

    abstract::Directed evolution is poised to change small molecule discovery and provide greater access to "drug space." Sarah Webb looks into the evolving drug discovery landscape. ...

    journal_title:BioTechniques

    pub_type: 新闻

    doi:10.2144/000114616

    authors: Webb S Ph D

    更新日期:2017-12-01 00:00:00

  • Temperature recording from thermocyclers used for PCR.

    abstract::Using a simple electronic circuit, a thermocouple can be connected to a chart recorder to measure the actual temperature inside a PCR tube. This allows accurate inspection of the thermocycle program and comparison between thermoprofiles from different thermocyclers. We found that the recording of temperature cycling e...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:

    authors: Stamm S,Gillo B,Brosius J

    更新日期:1991-04-01 00:00:00

  • Generation of a phagemid mouse recombinant antibody fragment library by multisite-directed mutagenesis.

    abstract::A nonimmune phagemid recombinant antibody fragment (rFab) library was generated with a nominal diversity of 1.16 x 10(7) using the QuikChange Multi Site-Directed Mutagenesis kit. Two degenerate primers spanning the third complementarity-determining region (CDR) loops of the antibody fragment light and heavy chain were...

    journal_title:BioTechniques

    pub_type:

    doi:10.2144/03354st05

    authors: Kelley LL,Momany C

    更新日期:2003-10-01 00:00:00

  • High-efficiency transfection of suspension cell lines.

    abstract::Transfection of suspension cells has proven to be very difficult using conventional methods. Here, we present a simple and time-saving new transfection protocol wherein cell culture plates coated with chicken egg white are seeded with suspension cells prior to transfection. Our results demonstrate that coupling egg wh...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/000113914

    authors: Basiouni S,Fuhrmann H,Schumann J

    更新日期:2012-08-01 00:00:00

  • Evaluation of DNA degradation and establishment of a degradation analysis model for Lepidoptera specimens.

    abstract::Millions of museum specimens are integral to biodiversity studies; however, DNA degradation may limit the ability to obtain DNA sequences. In this study, a degradation analysis model for Lepidoptera specimens was established. Based on this model, we revealed the characteristics of DNA fragment distribution caused by e...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/btn-2019-0166

    authors: Xu Y,Ren X,Wang H,Wang M,Li G

    更新日期:2020-03-01 00:00:00

  • A simple microfluidic device for live cell imaging of Arabidopsis cotyledons, leaves, and seedlings.

    abstract::One of the challenges of performing live-cell imaging in plants is establishing a system for securing the sample during imaging that allows for the rapid addition of treatments. Here we report how a commercially available device called a HybriWell™ can be repurposed to create an imaging chamber suitable for Arabidopsi...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/btn-2018-0044

    authors: Vang S,Seitz K,Krysan PJ

    更新日期:2018-06-01 00:00:00

  • Efficiency of transduction by recombinant Sindbis replicon virus varies among cell lines, including mosquito cells and rat sensory neurons.

    abstract::Recombinant alphaviruses have been used as vehicles for delivery and expression of heterologous genes in mammalian, avian and insect cell lines. We have used a Sindbis replicon virus (Sinreplac) able to express the E. coli lacZ gene to compare the efficiency of transduction in one insect, six mammalian cell lines and ...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/96213rr02

    authors: Corsini J,Traul DL,Wilcox CL,Gaines P,Carlson JO

    更新日期:1996-09-01 00:00:00

  • Generation and characterization of recombinant vascular targeting agents from hybridoma cell lines.

    abstract::Vascular targeting agents (VTAs) can be produced by linking antibodies or antibody fragments directed against endothelial cell markers to effector moieties. So far, it has been necessary to produce the components of VTAs (antibody, antibody fragment, linker, and effector) separately and, subsequently, to conjugate the...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/01301dd03

    authors: Gottstein C,Wels W,Ober B,Thorpe PE

    更新日期:2001-01-01 00:00:00

  • Double venipuncture is not required for adequate S-100B determination in melanoma patients.

    abstract::S-100B is used in melanoma follow-up. This serum biomarker is also present in adipocytes; therefore, subcutaneous adipocytes trapped in the needle before performing a venipuncture could contaminate the serum. The aim was to study the influence of adipocyte contamination on blood samples used for S-100B analysis, possi...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/btn-2019-0147

    authors: Damude S,Muller Kobold AC,Bastiaannet E,Kruijff S,Hoekstra HJ,Wevers KP

    更新日期:2020-11-01 00:00:00

  • 3' RACE walking along a large cDNA employing tiered suppression PCR.

    abstract::Large genes present particular cloning difficulties, especially when expressed at relatively low levels. We describe a novel method, termed 3' rapid amplification of cDNA ends (RACE) walking, for the rapid determination of unknown 3' flanking sequence of a large cDNA. The technique is a derivative of the anchored PCR ...

    journal_title:BioTechniques

    pub_type:

    doi:10.2144/03344st04

    authors: Park DJ,Pask AJ,Renfree MB,Graves JA

    更新日期:2003-04-01 00:00:00

  • Oligonucleotide microarray analysis of aminoallyl-labeled cDNA targets from linear RNA amplification.

    abstract::Single-stranded long oligonucleotide-based (50- to 70-mer) microarrays offer several advantages over conventional cDNA microarrays. These include the easy preparation of the probes, low cost of array production, and low cross-contamination during probe handling. However, the application of oligonucleotide microarrays ...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/04374ST02

    authors: Kaposi-Novak P,Lee JS,Mikaelyan A,Patel V,Thorgeirsson SS

    更新日期:2004-10-01 00:00:00

  • Use of herpes virus amplicon vectors to study brain disorders.

    abstract::There is an enormous initiative to establish the genetic basis for disorders of brain function. Unfortunately, genetic intervention is not accomplished easily in the nervous system. One strategy is to engineer and deliver to neurons specialized viral vectors that carry a gene (or genes) of interest, thereby exploiting...

    journal_title:BioTechniques

    pub_type: 杂志文章,评审

    doi:10.2144/05393PS01

    authors: Neve RL,Neve KA,Nestler EJ,Carlezon WA Jr

    更新日期:2005-09-01 00:00:00

  • Measurement of isolated myocyte volume using the Coulter models Z2 and ZM/C256: a comparison of instrument function.

    abstract::Changes in cardiac structure that depart from normal have generally been termed "remodeling". Assessment of ventricular remodeling at the cellular level should include measurement of myocyte dimensions. A well-established and reliable method to assess myocyte remodeling uses isolated cells and the Coulter Counter/Chan...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/98253pf02

    authors: Said S,Tamura T,Gerdes AM

    更新日期:1998-09-01 00:00:00

  • Simultaneous use of standard and low-melting agarose for the separation and isolation of DNA by electrophoresis.

    abstract::In this communication we describe the sequential use of standard and low-melting agarose in a single gel slab for the electrophoresis of DNA. This method has the advantages of high resolution and reproducibility characteristic of standard agarose and the ease of manipulation of DNA for direct cloning, sequential diges...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:

    authors: Fotadar U,Shapiro LE,Surks MI

    更新日期:1991-02-01 00:00:00

  • Dispensing of very low volumes of ultra high viscosity alginate gels: a new tool for encapsulation of adherent cells and rapid prototyping of scaffolds and implants.

    abstract::We present a tool for dispensing very low volumes (20 nL or more) of ultra high viscosity (UHV) medical-grade alginate hydrogels. It uses a modified piezo-driven micrometering valve, integrated into a versatile system that allows fast prototyping of encapsulation procedures and scaffold production. Valves show excelle...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/000113014

    authors: Gepp MM,Ehrhart F,Shirley SG,Howitz S,Zimmermann H

    更新日期:2009-01-01 00:00:00

  • Found in translation.

    abstract::In the quest to move more basic research discoveries into the clinic, the medical community is building training programs to help researchers gain "translational" skills. Sarah Webb explores how PhDs are learning to speak the language of the clinic. ...

    journal_title:BioTechniques

    pub_type: 新闻

    doi:10.2144/000114194

    authors: Webb SA

    更新日期:2014-08-01 00:00:00

  • PCR-introduced loop structure as primer in DNA sequencing.

    abstract::The need for a primer hybridization step before sequencing has been eliminated using a stem-loop structure generated by PCR. The loop structure is obtained by careful design of the PCR primer or by cloning the target DNA into a dedicated vector (pRIT 28HP). After solid-phase capture of the PCR product, the loop is for...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/98255rr02

    authors: Ronaghi M,Pettersson B,Uhlén M,Nyrén P

    更新日期:1998-11-01 00:00:00

  • Pilot-scale production of murine monoclonal antibodies in agitated, ceramic-matrix or hollow-fiber cell culture systems.

    abstract::The purpose of this research was to compare three bioreactor systems for the pilot-scale production of monoclonal antibodies (MAbs). We needed to produce gram quantities of murine MAbs against human prostatic acid phosphatase for use in fragmentation, radiolabeling and in vivo radio-imaging studies. The stable hybrido...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:

    authors: Kurkela R,Fraune E,Vihko P

    更新日期:1993-10-01 00:00:00

  • Limitations for purification of murine interleukin-18 when expressed as a fusion protein containing the FLAG peptide.

    abstract::As a strategy to purify recombinant murine Interleukin (IL)-18, we cloned the mature coding region of this protein into the pFLAG-1 expression system. The intent was to use the FLAG peptide "tag" as an amino terminal addition to IL-18 so that purification of this fusion protein (FLAG-IL-18) on anti-FLAG antibody affin...

    journal_title:BioTechniques

    pub_type:

    doi:

    authors: Elhofy A,Bost KL

    更新日期:1998-09-01 00:00:00

  • The era of 'omics unlimited.

    abstract::Determining the primary sequences of informational macromolecules is no longer a limiting factor for our ability to completely understand the biological functioning of cells and organisms. Similarly, our understanding of transcriptional regulation (transcriptomics) has been greatly enhanced by the availability of micr...

    journal_title:BioTechniques

    pub_type: 杂志文章,评审

    doi:10.2144/000113137

    authors: Kandpal R,Saviola B,Felton J

    更新日期:2009-04-01 00:00:00

  • Impact of RNA extraction from limited samples on microarray results.

    abstract::To move microarray technology into the diagnostic realm, the impact of technical parameters, such as sample preparation and RNA extraction, needs to be understood and minimized. We evaluated the impact of two RNA extraction methods, DNase treatment and the amount of hybridized cDNA probe, on the outcome of microarray ...

    journal_title:BioTechniques

    pub_type:

    doi:10.2144/03355st04

    authors: Ojaniemi H,Evengard B,Lee DR,Unger ER,Vernon SD

    更新日期:2003-11-01 00:00:00

  • Fluorescently labeled oligonucleotide extension: a rapid and quantitative protocol for primer extension.

    abstract::Identification of nucleotides used for RNA chain initiation or for contacting DNA binding proteins is basic to our understanding of gene regulation. Normally, a radioactive primer is used to copy RNA or DNA. The polymerase extension stops at free ends of mRNA (as in promoter mapping) or at the position of template cle...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/03351rr01

    authors: Fekete RA,Miller MJ,Chattoraj DK

    更新日期:2003-07-01 00:00:00

  • Generation of high-titer retroviral vectors following receptor-mediated, adenovirus-augmented transfection.

    abstract::A new procedure is described for the generation of high-titer, helper-free retrovirus vectors employing receptor-mediated, adenovirus-augmented transfection into a standard packaging cell line. Viral titers are increased 30-fold to 100-fold in transiently (> 10(5) infectious units per mL) and stable (> 10(7) infectiou...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:

    authors: von Rüden T,Stingl L,Cotten M,Wagner E,Zatloukal K

    更新日期:1995-03-01 00:00:00