Evidence for a methylammonium-binding site on methylamine dehydrogenase of Thiobacillus versutus.

Abstract:

:The nonconvertible substrate analogues di-, tri-, and tetramethylammonium are bound with fairly high affinity to oxidized methylamine dehydrogenase (MADHox) from Thiobacillus versutus and induce the same red-shift in the optical absorbance spectrum of MADHox as do the monovalent cations Cs+, Rb+, and NH4+. Like the monovalent cations, trimethylamine also competitively inhibits the reduction of MADHox by methylamine. Rapid-scan experiments show that within the first few milliseconds of the reaction between MADHox and methylamine a red-shifted intermediate is formed as well. Taken together these experiments demonstrate the existence of a common binding site on MADHox for the substrate CH3NH3+, the substrate analogues (CH3)2NH2+, (CH3)3NH+, and (CH3)4N+, and the monovalent cations Cs+, Rb+, and NH4+. Therefore we conclude that, prior to conversion, methylamine is noncovalently bound to MADHox as a cation. The resonance Raman spectra of MADHox in the absence and presence of Cs+, NH4+, and (CH3)3NH+ are very similar, except for the C=O stretching frequencies of the o-quinone carbonyls of the tryptophyltryptophanquinone (TTQ) active center, which show 5-30 cm-1 downshifts. From these Raman results and the X-ray crystal structure, we conclude that the CH3NH3+ binding site is in close proximity to the O6 carbonyl oxygen of the TTQ.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Gorren AC,Moenne-Loccoz P,Backes G,de Vries S,Sanders-Loehr J,Duine JA

doi

10.1021/bi00040a002

subject

Has Abstract

pub_date

1995-10-10 00:00:00

pages

12926-31

issue

40

eissn

0006-2960

issn

1520-4995

journal_volume

34

pub_type

杂志文章
  • Subunit structure of thrombin-activated porcine factor VIII.

    abstract::Factor VIII (fVIII) is synthesized as a single chain having a domainal sequence A1-A2-B-A3-C1-C2. Analysis of the proteolyic cleavage of fVIII by thrombin by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) identifies three fragments designated fVIIIA1, fVIIIA2, and fVIIIA3-C1-C2 with fragment(s) d...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00428a038

    authors: Lollar P,Parker CG

    更新日期:1989-01-24 00:00:00

  • Electron spin echo envelope modulation study of oxygenated iron-cobalt hybrid hemoglobins reveals molecular features analogous to those of the oxy ferrous protein.

    abstract::Two oxygenated iron-cobalt hybrid hemoglobins (Hbs), (alpha Co-O2 beta Fe-O2)2 and (alpha Fe-O2 beta Co-O2)2, were studied by electron spin echo envelope modulation (ESEEM) spectroscopy in order to measure (i) electron-nuclear hyperfine and nuclear quadrupole coupling to the N epsilon of the proximal histidyl imidazol...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00020a036

    authors: Lee HC,Peisach J,Tsuneshige A,Yonetani T

    更新日期:1995-05-23 00:00:00

  • Sensation and signaling of alpha-ketoglutarate and adenylylate energy charge by the Escherichia coli PII signal transduction protein require cooperation of the three ligand-binding sites within the PII trimer.

    abstract::PII proteins are sensors of alpha-ketoglutarate and adenylylate energy charge that regulate signal transduction proteins, metabolic enzymes, and permeases involved in nitrogen assimilation. Here, purified Escherichia coli PII and two of its receptors, ATase and NRII, were used to study the mechanisms of sensation by P...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9011594

    authors: Jiang P,Ninfa AJ

    更新日期:2009-12-08 00:00:00

  • Mechanistic diversity in a metalloenzyme superfamily.

    abstract::It is now appreciated that the relationships of proteins, particularly enzymes, within a protein superfamily can be understood not only in terms of their sequence similarities and three-dimensional structures but also by chemical threads that relate their functional attributes. The mechanistic ties among superfamily m...

    journal_title:Biochemistry

    pub_type: 杂志文章,评审

    doi:10.1021/bi001814v

    authors: Armstrong RN

    更新日期:2000-11-14 00:00:00

  • Unesterified long chain fatty acids inhibit the binding of single chain urokinase to the urokinase receptor.

    abstract::The interaction of single chain urokinase with its receptor accelerates plasminogen activator activity on cell surfaces and induces intracellular signalling in several cell types. To date, no physiologic inhibitor of this binding has been identified. We report that the binding of scuPA to its cellular receptor is inhi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9514774

    authors: al-Roof Higazi A,Aceto JF,Kniss D,Upson R,Cohen R,Dichek DA,Cines DB

    更新日期:1996-05-28 00:00:00

  • Xenopus laevis hemoglobin and its hybrids with hemoglobin A+.

    abstract::Isolated alpha and beta chains from Xenopus laevis hemoglobin have been purified. The isolation procedure yields native alpha chains whose functional behavior has been characterized and compared with that of human alpha chains. Isolated beta chains in the presence of oxygen are characterized by low stability, and henc...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00395a022

    authors: Condò SG,Giardina B,Bellelli A,Brunori M

    更新日期:1987-10-20 00:00:00

  • Spectral studies on the calcium binding properties of bovine brain S-100b protein.

    abstract::The effect of Ca2+ binding on the circular dichroism (CD) and 270-MHz proton nuclear magnetic resonance (NMR) spectra of brain-specific S-100b calcium binding protein has been examined at two pH values, 8.5 and 7.5. At pH 8.5, S-100b protein binds two Ca2+ per monomer with Kd values of 6 x 10(-5) and 2 x 10(-4) M, whe...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00276a033

    authors: Mani RS,Shelling JG,Sykes BD,Kay CM

    更新日期:1983-03-29 00:00:00

  • Structures and characteristics of novel siderophores from plant deleterious Pseudomonas fluorescens A225 and Pseudomonas putida ATCC 39167.

    abstract::When Pseudomonas putida ATCC 39167 and plant-deleterious Pseudomonas fluorescens A225 were grown in an iron-deficient culture medium, they each produced two different novel yellow-green fluorescent pseudobactins: P39167-I, II and PA225-I, II. Pseudobactin P39167-I has a molecular formula of C46H65O23N13 and is monoani...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi962670g

    authors: Khalil-Rizvi S,Toth SI,van der Helm D,Vidavsky I,Gross ML

    更新日期:1997-04-08 00:00:00

  • Structure of glucagon-like peptide (7-36) amide in a dodecylphosphocholine micelle as determined by 2D NMR.

    abstract::We have used 2D 1H NMR to determine the structure of glucagon-like peptide-1-(7-36) amide bound to a dodecylphosphocholine micelle. In this membranelike environment, the peptide hormone is shown to have a structure similar to that observed for glucagon. It consists of an N-terminal random coil segment (residues 1-7), ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00178a009

    authors: Thornton K,Gorenstein DG

    更新日期:1994-03-29 00:00:00

  • Interactions of wild-type and mutant M protein of vesicular stomatitis virus with viral nucleocapsid and envelope in intact virions. Evidence from [125I]iodonaphthyl azide labeling and specific cross-linking.

    abstract::Four different temperature-sensitive M protein mutants (tsM) of vesicular stomatitis virus (VSV) were characterized with regard to the association of the mutated M protein either with nucleocapsids or with membranes in the intact virions. Virions were labeled with the photoreactive hydrophobic probe [125I]iodonaphthyl...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00527a020

    authors: Mancarella DA,Lenard J

    更新日期:1981-11-24 00:00:00

  • Substrate specificity, metal binding properties, and spectroscopic characterization of the DapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase from Haemophilus influenzae.

    abstract::The catalytic and structural properties of divalent metal ion cofactor binding sites in the dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE) from Haemophilus influenzae were investigated. Co(II)-substituted DapE enzyme was 25% more active than the Zn(II)-loaded form of the enzyme. Interestingly, Mn...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi034845+

    authors: Bienvenue DL,Gilner DM,Davis RS,Bennett B,Holz RC

    更新日期:2003-09-16 00:00:00

  • Structure-activity relationships for the interaction of bovine pancreatic trypsin inhibitor with an intracellular site on a large conductance Ca(2+)-activated K(+) channel.

    abstract::Large conductance Ca(2+)-activated K(+) channels (BK(Ca)) contain an intracellular binding site for bovine pancreatic trypsin inhibitor (BPTI), a well-known inhibitor of various serine proteinase (SerP) enzymes. To investigate the structural basis of this interaction, we examined the activity of 11 BPTI mutants using ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi992140v

    authors: Favre I,Moss GW,Goldenberg DP,Otlewski J,Moczydlowski E

    更新日期:2000-02-29 00:00:00

  • Akt-dependent antiapoptotic action of insulin is sensitive to farnesyltransferase inhibitor.

    abstract::CHO cells expressing the human insulin receptors (IR) were used to evaluate the effect of the potent farnesyltransferase inhibitor, manumycin, on insulin antiapoptotic function. Cell treatment with manumycin blocked insulin's ability to suppress pro-apoptotic caspase-3 activity which led to time-dependent proteolytic ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi000995y

    authors: Park D,Pandey SK,Maksimova E,Kole S,Bernier M

    更新日期:2000-10-17 00:00:00

  • Coupling factor 1 from Escherichia coli lacking subunits delta and epsilon: preparation and specific binding to depleted membranes, mediated by subunits delta or epsilon.

    abstract::A procedure for the preparation of coupling factor 1 (F1) from Escherichia coli lacking subunits delta and epsilon is described. Using chloroform and dimethyl sulfoxide, we can isolate F1 containing only subunits alpha, beta, and gamma [F1(alpha beta gamma)] directly from membrane vesicles in 10-mg quantities. Pure an...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00438a030

    authors: Tuttas-Dörschug R,Hanstein WG

    更新日期:1989-06-13 00:00:00

  • Effect of lipid composition on the calcium/adenosine 5'-triphosphate coupling ratio of the Ca2+-ATPase of sarcoplasmic reticulum.

    abstract::The Ca2+-ATPase of sarcoplasmic reticulum was purified and depleted of proteolipids by solubilization in Triton X-100 and by fractionation on a DE-52 column. The protein reconstituted by deoxycholate-cholate dialysis at low lipid to protein ratios (2-5 mg of lipid/mg of protein), with either dioleoylphosphatidylethano...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00296a021

    authors: Navarro J,Toivio-Kinnucan M,Racker E

    更新日期:1984-01-03 00:00:00

  • Cardiolipin-cholesterol interactions in the liquid-crystalline phase: a steady-state and time-resolved fluorescence anisotropy study with cis- and trans-parinaric acids as probes.

    abstract::The potency of cholesterol to affect the acyl chain order and dynamics of cardiolipin membranes in the liquid-crystalline state was monitored by steady-state and time-resolved fluorescence anisotropy as well as excited-state lifetime measurements with cis- and trans-parinaric acids as probes. Up to a cholesterol mole ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00357a054

    authors: Gallay J,Vincent M

    更新日期:1986-05-06 00:00:00

  • Mammalian folylpoly-gamma-glutamate synthetase. 1. Purification and general properties of the hog liver enzyme.

    abstract::Folylpolyglutamate synthetase was purified 30,000-150,000-fold from hog liver. Purification required the use of protease inhibitors, and the protein was purified to homogeneity in two forms. Both forms of the enzyme were monomers of Mr 62,000 and had similar specific activities. The specific activity of the homogeneou...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00376a024

    authors: Cichowicz DJ,Shane B

    更新日期:1987-01-27 00:00:00

  • DNA deformability as a recognition feature in the reverb response element.

    abstract::Most nuclear receptors recognize the same consensus hexameric sequence, AGGTCA. An important question has been how the various members of this transcription factor family distinguish identity features in these closely related DNA sites. We determined structures from several crystal forms of the RevErb-DNA complex and ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi011086r

    authors: Sierk ML,Zhao Q,Rastinejad F

    更新日期:2001-10-30 00:00:00

  • Tubulin Binding and Polymerization Promoting Properties of Tubulin Polymerization Promoting Proteins Are Evolutionarily Conserved.

    abstract::Tubulin polymerization promoting proteins (TPPPs) constitute a eukaryotic protein family. There are three TPPP paralogs in the human genome, denoted as TPPP1-TPPP3. TPPP1 and TPPP3 are intrinsically unstructured proteins (IUPs) that bind and polymerize tubulin and stabilize microtubules, but TPPP2 does not. Vertebrate...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.6b00902

    authors: Oláh J,Szénási T,Szabó A,Kovács K,Lőw P,Štifanić M,Orosz F

    更新日期:2017-02-21 00:00:00

  • Energy coupling in Escherichia coli DNA gyrase: the relationship between nucleotide binding, strand passage, and DNA supercoiling.

    abstract::Binding of the nonhydrolyzable ATP analogue 5'-adenylyl-beta, gamma-imidodiphosphate (ADPNP) to Escherichia coli DNA gyrase can lead to a limited noncatalytic supercoiling of DNA. Here we examine the efficiency of coupling between ADPNP binding and the change in linking number either of positively or negatively superc...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi952433y

    authors: Bates AD,O'Dea MH,Gellert M

    更新日期:1996-02-06 00:00:00

  • Reactivity of sulfenic acid in human serum albumin.

    abstract::Sulfenic acid is formed upon oxidation of thiols and is a central intermediate in the redox modulation of an increasing number of proteins. Methods for quantifying or even detecting sulfenic acid are scarce. Herein, the reagent 7-chloro-4-nitrobenz-2-oxa-1,3-diazole was determined not to be suitable as a chromophoric ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi701520y

    authors: Turell L,Botti H,Carballal S,Ferrer-Sueta G,Souza JM,Durán R,Freeman BA,Radi R,Alvarez B

    更新日期:2008-01-08 00:00:00

  • Purification and characterization of a cathepsin D protease from bovine chromaffin granules.

    abstract::Purification and potential tachykinin and enkephalin precursor cleaving enzymes from bovine chromaffin granules was undertaken using as substrates the model precursors 35S-(Met)-beta-preprotachykinin [35S-(Met)-beta-PPT] and 35S-(Met)-preproenkephalin [35S-(Met)-PPE]. Purification by concanavalin A-Sepharose, Sephacry...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00132a011

    authors: Krieger TJ,Hook VY

    更新日期:1992-05-05 00:00:00

  • Infrared spectroscopic study of the secondary structure of melittin in water, 2-chloroethanol, and phospholipid bilayer dispersions.

    abstract::The conformations of melittin, an amphipathic polypeptide consisting of 26 amino acid residues, and its hydrophobic (residues 1--19) and hydrophilic (residues 20--26) fragments were examined in various solvent systems, including H2O, 2H2O, 2-chloroethanol, and 1,2-dimyristoylphosphatidylcholine (DMPC) multilayers, by ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00539a006

    authors: Lavialle F,Adams RG,Levin IW

    更新日期:1982-05-11 00:00:00

  • An infrared spectroscopic study of the secondary structure of protein kinase C alpha and its thermal denaturation.

    abstract::The secondary structure of protein kinase C alpha (PKC alpha) has been studied using infrared spectroscopy in the presence of both H(2)O and D(2)O buffers. In the absence of ligands at 20 degrees C, it was shown that beta-sheet is the major component, representing about 44% of the total structure, whereas the alpha-he...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi035128i

    authors: Torrecillas A,Corbalán-García S,Gómez-Fernández JC

    更新日期:2004-03-02 00:00:00

  • Structure and cholesterol dynamics of caveolae/raft and nonraft plasma membrane domains.

    abstract::Despite recognition that the plasma membrane (PM) is comprised of lipid raft domains that are key organizing sites of multiple signaling pathways and other cell functions, limited information is available regarding the structure and function in sterol dynamics of these microdomains. To begin to resolve these issues, M...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0602720

    authors: Gallegos AM,Storey SM,Kier AB,Schroeder F,Ball JM

    更新日期:2006-10-03 00:00:00

  • Sugars Require Rigid Multivalent Displays for Activation of Mouse Sperm Acrosomal Exocytosis.

    abstract::As a prerequisite to mammalian fertilization, the sperm acrosomal vesicle fuses with the plasma membrane and the acrosome contents are exocytosed. Induction occurs through engagement of the sperm receptors by multiple sugar residues. Multivalent polymers displaying mannose, fucose, or GlcNAc are effective synthetic in...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.7b00166

    authors: Huang H,Rodolis MT,Bhatia SR,Sampson NS

    更新日期:2017-06-06 00:00:00

  • Differential interaction of lecithin-retinol acyltransferase with cellular retinol binding proteins.

    abstract::Esterification of retinol (vitamin A alcohol) with long-chain fatty acids by lecithin-retinol acyltransferase (LRAT) is an important step in both the absorption and storage of vitamin A. Retinol in cells is bound by either cellular retinol binding protein (CRBP), present in most tissues including liver, or cellular re...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00144a014

    authors: Herr FM,Ong DE

    更新日期:1992-07-28 00:00:00

  • Acetylation by Eis and Deacetylation by Rv1151c of Mycobacterium tuberculosis HupB: Biochemical and Structural Insight.

    abstract::Bacterial nucleoid-associated proteins (NAPs) are critical to genome integrity and chromosome maintenance. Post-translational modifications of bacterial NAPs appear to function similarly to their better studied mammalian counterparts. The histone-like NAP HupB from Mycobacterium tuberculosis (Mtb) was previously obser...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.7b01089

    authors: Green KD,Biswas T,Pang AH,Willby MJ,Reed MS,Stuchlik O,Pohl J,Posey JE,Tsodikov OV,Garneau-Tsodikova S

    更新日期:2018-02-06 00:00:00

  • A fluorescent pentameric thiophene derivative detects in vitro-formed prefibrillar protein aggregates.

    abstract::Protein aggregation is associated with a wide range of diseases, and molecular probes that are able to detect a diversity of misfolded protein assemblies are of great importance. The identification of prefibrillar states preceding the formation of well-defined amyloid fibrils is of particular interest both because of ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi100922r

    authors: Hammarström P,Simon R,Nyström S,Konradsson P,Aslund A,Nilsson KP

    更新日期:2010-08-17 00:00:00

  • Stacking of bacteriochlorophyll c macrocycles in chlorosome from Chlorobium limicola as revealed by intermolecular 13C magnetic-dipole correlation, X-ray diffraction, and quadrupole coupling in 25Mg NMR.

    abstract::The stacking of the bacteriochlorophyll (BChl) c macrocycles and the role of water in forming an aggregate sheet, in chlorosome, were examined by means of (13)C NMR spectroscopy, the measurement of the X-ray diffraction pattern, and (25)Mg NMR spectroscopy. (1) The stacking of the macrocycles, i.e., weakly overlapped ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi801651w

    authors: Kakitani Y,Koyama Y,Shimoikeda Y,Nakai T,Utsumi H,Shimizu T,Nagae H

    更新日期:2009-01-13 00:00:00