Microevolution of Dengue viruses circulating among primary school children in Kamphaeng Phet, Thailand.

Abstract:

:To determine the extent and structure of genetic variation in dengue viruses (DENV) on a restricted spatial and temporal scale, we sequenced the E (envelope) genes of DENV-1, -2, and -3 isolates collected in 2001 from children enrolled in a prospective school-based study in Kamphaeng Phet, Thailand, and diagnosed with dengue disease. Our analysis revealed substantial viral genetic variation in both time and space, with multiple viral lineages circulating within individual schools, suggesting the frequent gene flow of DENV into this microenvironment. More-detailed analyses of DENV-2 samples revealed strong clustering of viral isolates within individual schools and evidence of more-frequent viral gene flow among schools closely related in space. Conversely, we observed little evolutionary change in those viral isolates sampled over multiple time points within individual schools, indicating a low rate of mutation fixation. These results suggest that frequent viral migration into Kamphaeng Phet, coupled with population (school) subdivision, shapes the genetic diversity of DENV on a local scale, more so than in situ evolution within school catchment areas.

journal_name

J Virol

journal_title

Journal of virology

authors

Jarman RG,Holmes EC,Rodpradit P,Klungthong C,Gibbons RV,Nisalak A,Rothman AL,Libraty DH,Ennis FA,Mammen MP Jr,Endy TP

doi

10.1128/JVI.02728-07

subject

Has Abstract

pub_date

2008-06-01 00:00:00

pages

5494-500

issue

11

eissn

0022-538X

issn

1098-5514

pii

JVI.02728-07

journal_volume

82

pub_type

杂志文章
  • Altered gag polyprotein cleavage specificity of feline immunodeficiency virus/human immunodeficiency virus mutant proteases as demonstrated in a cell-based expression system.

    abstract::We have used feline immunodeficiency virus (FIV) protease (PR) as a mutational system to study the molecular basis of substrate-inhibitor specificity for lentivirus PRs, with a focus on human immunodeficiency virus type 1 (HIV-1) PR. Our previous mutagenesis studies demonstrated that discrete substitutions in the acti...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00374-06

    authors: Lin YC,Brik A,de Parseval A,Tam K,Torbett BE,Wong CH,Elder JH

    更新日期:2006-08-01 00:00:00

  • Regulation of antinucleoprotein IgG by systemic vaccination and its effect on influenza virus clearance.

    abstract::Seasonal influenza epidemics recur due to antigenic drift of envelope glycoprotein antigens and immune evasion of circulating viruses. Additionally, antigenic shift can lead to influenza pandemics. Thus, a universal vaccine that protects against multiple influenza virus strains could alleviate the continuing impact of...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00150-11

    authors: Lamere MW,Moquin A,Lee FE,Misra RS,Blair PJ,Haynes L,Randall TD,Lund FE,Kaminski DA

    更新日期:2011-05-01 00:00:00

  • Association of plasma viral RNA load with prognosis in cats naturally infected with feline immunodeficiency virus.

    abstract::We measured the quantity of plasma feline immunodeficiency virus (FIV) RNA using a real-time sequence detecting system. Plasma viral RNA load was shown to correlate with the clinical stage, survival time, and disease progression in naturally FIV-infected cats. The present study indicates that the plasma viral RNA load...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.76.19.10079-10083.2002

    authors: Goto Y,Nishimura Y,Baba K,Mizuno T,Endo Y,Masuda K,Ohno K,Tsujimoto H

    更新日期:2002-10-01 00:00:00

  • Regulation of herpes simplex virus-specific cell-mediated immunity by a specific suppressor factor.

    abstract::Our study was designed to investigate the nature of an antigen-specific suppressor factor generated by antigen-stimulated herpes simplex virus (HSV)-immune splenocytes. Factor SF-200, a 90,000- to 100,000-dalton fraction obtained after Sephacryl gel filtration, suppressed the generation of HSV-specific cytotoxic T-lym...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.58.2.331-338.1986

    authors: Horohov DW,Wyckoff JH 3rd,Moore RN,Rouse BT

    更新日期:1986-05-01 00:00:00

  • Recombination between endogenous and exogenous RNA tumor virus genes as analyzed by nucleic acid hybridization.

    abstract::Certain chicken cells that do not spontaneously release virus particles have been shown to produce a subgroup E avian RNA tumor virus, Rous-associated virus 60 (RAV-60), after infection with viruses of other subgroups. The nucleic acids of RAV-60 were analyzed for sequence homologies with the viral nucleic acids conta...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.15.6.1367-1377.1975

    authors: Hayward WS,Hanafusa H

    更新日期:1975-06-01 00:00:00

  • Pulmonary C Fibers Modulate MMP-12 Production via PAR2 and Are Involved in the Long-Term Airway Inflammation and Airway Hyperresponsiveness Induced by Respiratory Syncytial Virus Infection.

    abstract:UNLABELLED:Children with acute respiratory syncytial virus (RSV) infection often develop sequelae of persistent airway inflammation and wheezing. Pulmonary C fibers (PCFs) are involved in the generation of airway inflammation and resistance; however, their role in persistent airway diseases after RSV is unexplored. Her...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.02534-15

    authors: Zang N,Zhuang J,Deng Y,Yang Z,Ye Z,Xie X,Ren L,Fu Z,Luo Z,Xu F,Liu E

    更新日期:2015-12-16 00:00:00

  • Cullin4A and cullin4B are interchangeable for HIV Vpr and Vpx action through the CRL4 ubiquitin ligase complex.

    abstract:UNLABELLED:Human immunodeficiency virus (HIV) seizes control of cellular cullin-RING E3 ubiquitin ligases (CRLs) to promote viral replication. HIV-1 Vpr and HIV-2/simian immunodeficiency virus (SIV) Vpr and Vpx engage the cullin4 (CUL4)-containing ubiquitin ligase complex (CRL4) to cause polyubiquitination and proteaso...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00241-14

    authors: Sharifi HJ,Furuya AK,Jellinger RM,Nekorchuk MD,de Noronha CM

    更新日期:2014-06-01 00:00:00

  • The measles virus hemagglutinin stalk: structures and functions of the central fusion activation and membrane-proximal segments.

    abstract:UNLABELLED:The measles virus (MeV) membrane fusion apparatus consists of a fusion protein trimer and an attachment protein tetramer. To trigger membrane fusion, the heads of the MeV attachment protein, hemagglutinin (H), bind cellular receptors while the 96-residue-long H stalk transmits the triggering signal. Structur...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.02846-13

    authors: Navaratnarajah CK,Kumar S,Generous A,Apte-Sengupta S,Mateo M,Cattaneo R

    更新日期:2014-06-01 00:00:00

  • Role of the karyopherin pathway in human immunodeficiency virus type 1 nuclear import.

    abstract::The interaction of the human immunodeficiency virus type 1 (HIV-1) nucleoprotein complex with the cell nuclear import machinery is necessary for viral replication in macrophages and for the establishment of infection in quiescent T lymphocytes. The karyophilic properties of two viral proteins, matrix (MA) and Vpr, are...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.70.2.1027-1032.1996

    authors: Gallay P,Stitt V,Mundy C,Oettinger M,Trono D

    更新日期:1996-02-01 00:00:00

  • Interleukin-1 Receptor-Associated Kinase (IRAK) Signaling in Kaposi Sarcoma-Associated Herpesvirus-Induced Primary Effusion Lymphoma.

    abstract::Kaposi sarcoma-associated herpesvirus (KSHV) is necessary but not sufficient for primary effusion lymphoma (PEL) development. Alterations in cellular signaling pathways are also a characteristic of PEL. Other B cell lymphomas have acquired an oncogenic mutation in the myeloid differentiation primary response 88 (MYD88...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.02123-19

    authors: Seltzer J,Moorad R,Schifano JM,Landis JT,Dittmer DP

    更新日期:2020-05-04 00:00:00

  • Synthesis of viral ribonucleic acid during restricted adenovirus infection.

    abstract::The mechanism by which simian virus 40 converts the abortive adenovirus type 7 infection of monkey cells into an efficient lytic infection has been investigated. Analysis of ribonucleic acid (RNA) synthesis during unenhanced and enhanced infection of monkey cells has shown that adenovirus RNA synthesized in the aborti...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.10.2.220-227.1972

    authors: Fox RI,Baum SG

    更新日期:1972-08-01 00:00:00

  • DNA polymerase associated with human hepatitis B antigen.

    abstract::DNA polymerase activity was detected in each of eight preparations of concentrated human hepatitis B antigen (HBAg) rich in Dane particles prepared by high-speed centrifugation of antigen-positive human plasma and in none of seven control preparations prepared in the same way from HBAg-negative plasma. The incorporati...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.12.5.995-1005.1973

    authors: Kaplan PM,Greenman RL,Gerin JL,Purcell RH,Robinson WS

    更新日期:1973-11-01 00:00:00

  • Characterization of an extremely basic protein derived from granulosis virus nucleocapsids.

    abstract::Nucleocapsids were isolated from purified enveloped nucleocapsids of Plodia interpunctella granulosis virus by treatment with Nonidet P-40. When analyzed on sodium dodecyl sulfate-polyacrylamide gels, the nucleocapsids consisted of eight polypeptides. One of these, a major component with a molecular weight of 12,500 (...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.33.2.866-876.1980

    authors: Tweeten KA,Bulla LA,Consigli RA

    更新日期:1980-02-01 00:00:00

  • Selection of reversions and suppressors of a mutation in the CBF binding site of a lymphomagenic retrovirus.

    abstract::The retrovirus SL3 induces T-cell lymphomas in mice. The transcriptional enhancer in the long terminal repeat (LTR) of SL3 contains two 72-bp repeats. Each repeat contains a binding site for the transcription factor CBF (also called AML1). The CBF binding sites are called core elements. SAA is a mutant that is identic...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.73.9.7599-7606.1999

    authors: Martiney MJ,Rulli K,Beaty R,Levy LS,Lenz J

    更新日期:1999-09-01 00:00:00

  • Flow field-flow fractionation: new method for separating, purifying, and characterizing the diffusivity of viruses.

    abstract::The nature and theory of flow field-flow fractionation is described, and its potential applicability to virus-like particles is discussed. Different virus types are shown to be retained at different levels. Retention can be controlled by variation of the experimental parameters, in good agreement with theory. However,...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.21.1.131-138.1977

    authors: Giddings JC,Yang FJ,Myers MN

    更新日期:1977-01-01 00:00:00

  • Immunogenicity of influenza virus vaccine is increased by anti-gal-mediated targeting to antigen-presenting cells.

    abstract::This study describes a method for increasing the immunogenicity of influenza virus vaccines by exploiting the natural anti-Gal antibody to effectively target vaccines to antigen-presenting cells (APC). This method is based on enzymatic engineering of carbohydrate chains on virus envelope hemagglutinin to carry the alp...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00647-07

    authors: Abdel-Motal UM,Guay HM,Wigglesworth K,Welsh RM,Galili U

    更新日期:2007-09-01 00:00:00

  • Analysis of equine humoral immune responses to the transmembrane envelope glycoprotein (gp45) of equine infectious anemia virus.

    abstract::Defined segments of the transmembrane envelope glycoprotein (gp45) of equine infectious anemia virus were expressed as TrpLE fusion proteins and examined for their reactivity in Western immunoblots against a diverse panel of equine immune sera. The most immunogenic region of gp45 was localized to its amino terminus, p...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.65.2.1013-1018.1991

    authors: Chong YH,Ball JM,Issel CJ,Montelaro RC,Rushlow KE

    更新日期:1991-02-01 00:00:00

  • Phosphorylation of the human T-cell leukemia virus type 1 transactivator tax on adjacent serine residues is critical for tax activation.

    abstract::The Tax transactivator protein of human T-cell leukemia virus type 1 (HTLV-1) plays a central role in the activation of viral gene expression. In addition, Tax is capable of activating the expression of specific cellular genes and is involved in the transformation of T-lymphocytes resulting in the development of adult...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.73.1.738-745.1999

    authors: Bex F,Murphy K,Wattiez R,Burny A,Gaynor RB

    更新日期:1999-01-01 00:00:00

  • Covariation of major and minor viral capsid proteins in norovirus genogroup II genotype 4 strains.

    abstract::We report sequence hypervariability in the viral protein 1 (VP1) interaction domain of VP2 in the norovirus (NoV) genogroup II genotype 4 (GII.4) lineage on 3 levels: (i) the global evolution of pandemic/epidemic strains from the mid-1970s through post-2006, (ii) the local emergence of an epidemic strain, and (iii) an...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00228-11

    authors: Chan MC,Lee N,Ho WS,Law CO,Lau TC,Tsui SK,Sung JJ

    更新日期:2012-01-01 00:00:00

  • Functional contribution of cysteine residues to the human immunodeficiency virus type 1 envelope.

    abstract::Although the envelope gene of human immunodeficiency virus type 1 shows considerable strain variability, cysteine residues of the envelope protein are strongly conserved, suggesting that they are important to the envelope structure. We constructed and analyzed mutants of a biologically active molecular clone of human ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.64.5.2250-2259.1990

    authors: Tschachler E,Buchow H,Gallo RC,Reitz MS Jr

    更新日期:1990-05-01 00:00:00

  • Glycoprotein B cleavage is important for murid herpesvirus 4 to infect myeloid cells.

    abstract::Glycoprotein B (gB) is a conserved herpesvirus virion component implicated in membrane fusion. As with many-but not all-herpesviruses, the gB of murid herpesvirus 4 (MuHV-4) is cleaved into disulfide-linked subunits, apparently by furin. Preventing gB cleavage for some herpesviruses causes minor infection deficits in ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00709-13

    authors: Glauser DL,Milho R,Frederico B,May JS,Kratz AS,Gillet L,Stevenson PG

    更新日期:2013-10-01 00:00:00

  • A one-plasmid system to generate influenza virus in cultured chicken cells for potential use in influenza vaccine.

    abstract::Influenza virus has a set of ribonucleoproteins (RNPs) consisting of viral RNAs, influenza virus polymerase subunits, and nucleoprotein. Intracellular reconstitution of the whole set of RNPs via plasmid transfection results in the generation of influenza virus. By the use of reverse genetics and dual promoters, we con...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00781-09

    authors: Zhang X,Kong W,Ashraf S,Curtiss R 3rd

    更新日期:2009-09-01 00:00:00

  • Antibody prophylaxis and therapy against West Nile virus infection in wild-type and immunodeficient mice.

    abstract::West Nile virus (WNV) is a mosquito-borne Flavivirus that causes encephalitis in a subset of susceptible humans. Current treatment for WNV infections is supportive, and no specific therapy or vaccine is available. In this study, we directly tested the prophylactic and therapeutic efficacy of polyclonal antibodies agai...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.77.24.12941-12949.2003

    authors: Engle MJ,Diamond MS

    更新日期:2003-12-01 00:00:00

  • AR1 is an integral part of the adenovirus type 2 E1A-CR3 transactivation domain.

    abstract::We have previously shown that the nonconserved carboxy-terminal exon of the adenovirus type 2 E1A-289R protein contains two interchangeable sequence elements, auxiliary region (AR) 1 and AR2, that are required for efficient CR3-mediated transcriptional activation of the viral E4 promoter (M. Bondesson, C. Svensson, S....

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.72.7.5978-5983.1998

    authors: Ström AC,Ohlsson P,Akusjärvi G

    更新日期:1998-07-01 00:00:00

  • New temperate bacteriophage for Bacillus subtilis, rho 11.

    abstract::A new temperate bacteriophage, rho11, isolated by J. Hoch, has been characterized. This new phage is very similar to the temperate phage phi3T in size (380 nm), host range, homoimmunity, DNA buoyant density (1.694 g/ml), antigenicity, and molecular weight (around 6.0 X 10(7)) as determined in gels. Like phi3T, rho11 c...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.20.2.509-519.1976

    authors: Dean DH,Orrego JC,Hutchison KW,Halvorson HO

    更新日期:1976-11-01 00:00:00

  • DNA palindromes with a modest arm length of greater, similar 20 base pairs are a significant target for recombinant adeno-associated virus vector integration in the liver, muscles, and heart in mice.

    abstract::Our previous study has shown that recombinant adeno-associated virus (rAAV) vector integrates preferentially in genes, near transcription start sites and CpG islands in mouse liver (H. Nakai, X. Wu, S. Fuess, T. A. Storm, D. Munroe, E. Montini, S. M. Burgess, M. Grompe, and M. A. Kay, J. Virol. 79:3606-3614, 2005). Ho...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00963-07

    authors: Inagaki K,Lewis SM,Wu X,Ma C,Munroe DJ,Fuess S,Storm TA,Kay MA,Nakai H

    更新日期:2007-10-01 00:00:00

  • Molecular weight of DNA from actinophage MSP2.

    abstract::Actinophage MSP2 is infectious for Streptomyces venezuelae S13. Based upon electron microscopy of coliphage T4 mixed with MSP2, MSP2 had a head about 48 +/- 2 nm wide and 87 +/- 5 nm long. DNA from polyoma virus and from coliphages T4 and T7 served as reference markers in estimating the molecular weight of MSP2 DNA fr...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.16.3.736-740.1975

    authors: Lancaster WD,Jones LA

    更新日期:1975-09-01 00:00:00

  • Inhibition of Japanese encephalitis virus infection by nitric oxide: antiviral effect of nitric oxide on RNA virus replication.

    abstract::The antiviral effects of nitric oxide (NO) on Japanese encephalitis virus (JEV), a member of the family Flaviviridae, were investigated in this study. In vitro, inhibition of replication of JEV in gamma interferon-activated RAW 264.7 murine macrophages was correlated to cellular NO production. When cocultured with inf...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.71.7.5227-5235.1997

    authors: Lin YL,Huang YL,Ma SH,Yeh CT,Chiou SY,Chen LK,Liao CL

    更新日期:1997-07-01 00:00:00

  • Hantaan virus infection of human endothelial cells.

    abstract::The primary pathophysiologic finding of the viral disease known as Korean hemorrhagic fever, the etiological agent of which is Hantaan virus (HTV), is vascular instability. To investigate whether HTV was able to infect cells derived from human vascular tissue and alter their behavior, we infected in vitro primary adul...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.66.10.5929-5936.1992

    authors: Pensiero MN,Sharefkin JB,Dieffenbach CW,Hay J

    更新日期:1992-10-01 00:00:00

  • Identification of the site of Epstein-Barr virus persistence in vivo as a resting B cell.

    abstract::Epstein-Barr (EBV) is a powerful immortalizing virus for human B lymphocytes in vitro and is associated with several human neoplasias in vivo. Previously, we have shown that the majority of EBV-infected cells in the peripheral blood of healthy, persistently infected individuals do not express the activated phenotype, ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.71.7.4882-4891.1997

    authors: Miyashita EM,Yang B,Babcock GJ,Thorley-Lawson DA

    更新日期:1997-07-01 00:00:00