DNA palindromes with a modest arm length of greater, similar 20 base pairs are a significant target for recombinant adeno-associated virus vector integration in the liver, muscles, and heart in mice.

Abstract:

:Our previous study has shown that recombinant adeno-associated virus (rAAV) vector integrates preferentially in genes, near transcription start sites and CpG islands in mouse liver (H. Nakai, X. Wu, S. Fuess, T. A. Storm, D. Munroe, E. Montini, S. M. Burgess, M. Grompe, and M. A. Kay, J. Virol. 79:3606-3614, 2005). However, the previous method relied on in vivo selection of rAAV integrants and could be employed for the liver but not for other tissues. Here, we describe a novel method for high-throughput rAAV integration site analysis that does not rely on marker gene expression, selection, or cell division, and therefore it can identify rAAV integration sites in nondividing cells without cell manipulations. Using this new method, we identified and characterized a total of 997 rAAV integration sites in mouse liver, skeletal muscle, and heart, transduced with rAAV2 or rAAV8 vector. The results support our previous observations, but notably they have revealed that DNA palindromes with an arm length of greater, similar 20 bp (total length, greater, similar 40 bp) are a significant target for rAAV integration. Up to approximately 30% of total integration events occurred in the vicinity of DNA palindromes with an arm length of greater, similar 20 bp. Considering that DNA palindromes may constitute fragile genomic sites, our results support the notion that rAAV integrates at chromosomal sites susceptible to breakage or preexisting breakage sites. The use of rAAV to label fragile genomic sites may provide an important new tool for probing the intrinsic source of ongoing genomic instability in various tissues in animals, studying DNA palindrome metabolism in vivo, and understanding their possible contributions to carcinogenesis and aging.

journal_name

J Virol

journal_title

Journal of virology

authors

Inagaki K,Lewis SM,Wu X,Ma C,Munroe DJ,Fuess S,Storm TA,Kay MA,Nakai H

doi

10.1128/JVI.00963-07

subject

Has Abstract

pub_date

2007-10-01 00:00:00

pages

11290-303

issue

20

eissn

0022-538X

issn

1098-5514

pii

JVI.00963-07

journal_volume

81

pub_type

杂志文章
  • Abundant early expression of gpUL4 from a human cytomegalovirus mutant lacking a repressive upstream open reading frame.

    abstract::The human cytomegalovirus UL4 gene encodes a 48-kDa glycoprotein, expression of which is repressed at the translational level by a short upstream open reading frame (uORF2) within the UL4 transcript leader. Mutation of the uORF2 initiation codon in the viral genome eliminates ribosomal stalling at the uORF2 terminatio...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.75.15.7188-7192.2001

    authors: Alderete JP,Child SJ,Geballe AP

    更新日期:2001-08-01 00:00:00

  • Cellular localization and antigenic characterization of crimean-congo hemorrhagic fever virus glycoproteins.

    abstract::Crimean-Congo hemorrhagic fever virus (CCHFV), a member of the genus Nairovirus of the family Bunyaviridae, causes severe disease with high rates of mortality in humans. The CCHFV M RNA segment encodes the virus glycoproteins G(N) and G(C). To understand the processing and intracellular localization of the CCHFV glyco...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.79.10.6152-6161.2005

    authors: Bertolotti-Ciarlet A,Smith J,Strecker K,Paragas J,Altamura LA,McFalls JM,Frias-Stäheli N,García-Sastre A,Schmaljohn CS,Doms RW

    更新日期:2005-05-01 00:00:00

  • XbaI, PstI, and BglII restriction enzyme maps of the two orientations of the varicella-zoster virus genome.

    abstract::Cleavage of varicella-zoster virus DNA with the restriction endonucleases PstI, XbaI, and BglII resulted in 18, 22, and 20 fragments, respectively. Based on the molecular weights and molarities of these fragments, a molecular weight of 84 x 10(6) could be calculated for the varicella-zoster virus genome. In both the X...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.39.2.390-400.1981

    authors: Dumas AM,Geelen JL,Weststrate MW,Wertheim P,van der Noordaa J

    更新日期:1981-08-01 00:00:00

  • The region approximately between amino acids 81 and 137 of proteinase K-resistant PrPSc is critical for the infectivity of the Chandler prion strain.

    abstract::Although the major component of the prion is believed to be the oligomer of PrP(Sc), little information is available concerning regions on the PrP(Sc) molecule that affect prion infectivity. During the analysis of PrP(Sc) molecules from various prion strains, we found that PrP(Sc) of the Chandler strain showed a uniqu...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01740-08

    authors: Shindoh R,Kim CL,Song CH,Hasebe R,Horiuchi M

    更新日期:2009-04-01 00:00:00

  • Nectin-4-dependent measles virus spread to the cynomolgus monkey tracheal epithelium: role of infected immune cells infiltrating the lamina propria.

    abstract::After the contagion measles virus (MV) crosses the respiratory epithelium within myeloid cells that express the primary receptor signaling lymphocytic activation molecule (SLAM), it replicates briskly in SLAM-expressing cells in lymphatic organs. Later, the infection spreads to epithelia expressing nectin-4, an adhere...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.03037-12

    authors: Frenzke M,Sawatsky B,Wong XX,Delpeut S,Mateo M,Cattaneo R,von Messling V

    更新日期:2013-03-01 00:00:00

  • Oligomerization and activity of the helicase domain of the tobacco mosaic virus 126- and 183-kilodalton replicase proteins.

    abstract::A protein-protein interaction within the helicase domain of the Tobacco mosaic virus (TMV) 126- and 183-kDa replicase proteins was previously implicated in virus replication (S. Goregaoker, D. Lewandowski, and J. Culver, Virology 282:320-328, 2001). To further characterize the interaction, polypeptides covering the in...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.77.6.3549-3556.2003

    authors: Goregaoker SP,Culver JN

    更新日期:2003-03-01 00:00:00

  • Persistence and fitness of multidrug-resistant human immunodeficiency virus type 1 acquired in primary infection.

    abstract::This study examines the persistence and fitness of multidrug-resistant (MDR) viruses acquired during primary human immunodeficiency virus infection (PHI). In four individuals, MDR infections persisted over the entire study period, ranging from 36 weeks to 5 years, in the absence of antiretroviral therapy. In stark con...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.76.4.1753-1761.2002

    authors: Brenner BG,Routy JP,Petrella M,Moisi D,Oliveira M,Detorio M,Spira B,Essabag V,Conway B,Lalonde R,Sekaly RP,Wainberg MA

    更新日期:2002-02-01 00:00:00

  • 3Cpro of foot-and-mouth disease virus antagonizes the interferon signaling pathway by blocking STAT1/STAT2 nuclear translocation.

    abstract:UNLABELLED:Foot-and-mouth disease virus (FMDV) causes a highly contagious, debilitating disease in cloven-hoofed animals with devastating economic consequences. To survive in the host, FMDV has evolved to antagonize the host type I interferon (IFN) response. Previous studies have reported that the leader proteinase (L(...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.03668-13

    authors: Du Y,Bi J,Liu J,Liu X,Wu X,Jiang P,Yoo D,Zhang Y,Wu J,Wan R,Zhao X,Guo L,Sun W,Cong X,Chen L,Wang J

    更新日期:2014-05-01 00:00:00

  • Differences in sialic acid-galactose linkages in the chicken egg amnion and allantois influence human influenza virus receptor specificity and variant selection.

    abstract::Human influenza viruses are more efficiently isolated by inoculating patient samples into the amniotic rather than the allantoic cavity of embryonated chicken eggs. This type of cultivation selects virus variants with mutations around the hemagglutinin (HA) receptor binding site. To understand the molecular basis of t...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.71.4.3357-3362.1997

    authors: Ito T,Suzuki Y,Takada A,Kawamoto A,Otsuki K,Masuda H,Yamada M,Suzuki T,Kida H,Kawaoka Y

    更新日期:1997-04-01 00:00:00

  • Genetic and biochemical analysis of transformation-competent, replication-defective simian virus 40 large T antigen mutants.

    abstract::To study the role of the biochemical and physiological activities of simian virus 40 (SV40) large T antigen in the lytic and transformation processes, we have analyzed DNA replication-defective, transformation-competent T-antigen mutants. Here we describe two such mutants, C8/SV40 and T22/SV40, and also summarize the ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.53.1.120-127.1985

    authors: Manos MM,Gluzman Y

    更新日期:1985-01-01 00:00:00

  • Functional analysis of cis- and trans-acting replication factors of porcine circovirus type 1.

    abstract::The replication proteins Rep and Rep' of porcine circovirus type 1 (PCV1) are both capable of introducing and resealing strand discontinuities at the viral origin of DNA replication in vitro underlying genome amplification by rolling-circle replication. The PCV1 origin of replication encompasses the minimal binding si...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.02420-06

    authors: Steinfeldt T,Finsterbusch T,Mankertz A

    更新日期:2007-06-01 00:00:00

  • A Temperature-Dependent Translation Defect Caused by Internal Ribosome Entry Site Mutation Attenuates Foot-and-Mouth Disease Virus: Implications for Rational Vaccine Design.

    abstract::Foot-and-mouth disease (FMD), which is caused by FMD virus (FMDV), remains a major plague among cloven-hoofed animals worldwide, and its outbreak often has disastrous socioeconomic consequences. A live-attenuated FMDV vaccine will greatly facilitate the global control and eradication of FMD, but a safe and effective a...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00990-20

    authors: Yang D,Sun C,Gao R,Wang H,Liu W,Yu K,Zhou G,Zhao B,Yu L

    更新日期:2020-07-30 00:00:00

  • A Ca2+/calmodulin-dependent protein kinase, CaM kinase-Gr, expressed after transformation of primary human B lymphocytes by Epstein-Barr virus (EBV) is induced by the EBV oncogene LMP1.

    abstract::CaM kinase-Gr is a multifunctional Ca2+/calmodulin-dependent protein kinase which is enriched in neurons and T lymphocytes. The kinase is absent from primary human B lymphocytes but is expressed in Epstein-Barr virus (EBV)-transformed B-lymphoblastoid cell lines, suggesting that expression of the kinase can be upregul...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.68.3.1697-1705.1994

    authors: Mosialos G,Hanissian SH,Jawahar S,Vara L,Kieff E,Chatila TA

    更新日期:1994-03-01 00:00:00

  • Integrated adenovirus type 12 DNA in the transformed hamster cell line T637: sequence arrangements at the termini of viral DNA and mode of amplification.

    abstract::Approximately 20 to 22 copies of adenovirus type 12 (Ad12) DNA per cell were integrated into the genome of the cell line T637. Only a few of these copies seemed to remain intact and colinear with virion DNA. All other persisting viral genomes exhibited deletions or inversions or both in the right-hand part of Ad12 DNA...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.42.1.317-321.1982

    authors: Eick D,Doerfler W

    更新日期:1982-04-01 00:00:00

  • Early syncytium formation by bovine leukemia virus.

    abstract::Bovine leukemia virus (BLV) from either persistently infected bat cells or fetal lamb kidney cells induced rapid syncytium formation in F81 indicator cells. Distinct syncytia were seen within 2 h after inoculation of cells with highly concentrated (500-fold) cell-free BLV preparations and within 4 to 8 h when unconcen...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.38.3.1055-1063.1981

    authors: Graves DC,Jones LV

    更新日期:1981-06-01 00:00:00

  • rRNA cleavage as an index of ppp(A2'p)nA activity in interferon-treated encephalomyocarditis virus-infected cells.

    abstract::In cell-free systems, 2-5A [ppp(A2'p)nA, n = 2 to greater than or equal to 4] activates a latent endoribonuclease, the 2-5A-dependent RNase, which cleaves rRNA in intact ribosomes into discrete and characteristic products (D. H. Wreschner et al., Nucleic Acids Res. 9:1571-1581, 1981). Here we present Northern blots wh...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.46.3.1051-1055.1983

    authors: Silverman RH,Skehel JJ,James TC,Wreschner DH,Kerr IM

    更新日期:1983-06-01 00:00:00

  • Identification of Epstein-Barr virus (EBV) nuclear antigen 2 (EBNA2) target proteins by proteome analysis: activation of EBNA2 in conditionally immortalized B cells reflects early events after infection of primary B cells by EBV.

    abstract::The Epstein-Barr virus (EBV) is a ubiquitous B-lymphotropic herpesvirus associated with several malignant tumors, e.g., Burkitt's lymphoma and Hodgkin's disease, and is able to efficiently immortalize primary B lymphocytes in vitro. The growth program of infected B cells is initiated and maintained by the viral transc...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.78.8.3941-3952.2004

    authors: Schlee M,Krug T,Gires O,Zeidler R,Hammerschmidt W,Mailhammer R,Laux G,Sauer G,Lovric J,Bornkamm GW

    更新日期:2004-04-01 00:00:00

  • Inhibition of host translation in encephalomyocarditis virus-infected L cells: a novel mechanism.

    abstract::Encephalomyocarditis virus induced a rapid shutoff of host translation in mouse L cells shortly after infection and before viral proteins were made in detectable amounts. This kinetic pattern is similar to that seen in poliovirus-infected HeLa cells. However, the mechanisms of host shutoff are different in these two c...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.43.1.250-261.1982

    authors: Jen G,Thach RE

    更新日期:1982-07-01 00:00:00

  • Core binding factor beta plays a critical role by facilitating the assembly of the Vif-cullin 5 E3 ubiquitin ligase.

    abstract:UNLABELLED:The HIV-1 virion infectivity factor (Vif) targets the cellular cytidine deaminases APOBEC3G (A3G) and APOBEC3F (A3F) for degradation via the host ubiquitin-proteasome pathway. Vif recruits a cellular E3 ubiquitin ligase to polyubiquitinate A3G/F. The activity of Vif critically depends on the cellular core bi...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.03824-13

    authors: Fribourgh JL,Nguyen HC,Wolfe LS,Dewitt DC,Zhang W,Yu XF,Rhoades E,Xiong Y

    更新日期:2014-03-01 00:00:00

  • B- and T-lymphocyte responses to an immunodominant epitope of human immunodeficiency virus.

    abstract::Using synthetic peptides, we characterized the B-lymphocyte (antibody) and T-lymphocyte (proliferation) responses to an immunodominant epitope of human immunodeficiency virus type 1 (HIV-1) located near the amino-terminal end of the transmembrane glycoprotein (env amino acids 598 to 609). Both immunoglobulin M (IgM) a...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.62.8.2531-2536.1988

    authors: Schrier RD,Gnann JW Jr,Langlois AJ,Shriver K,Nelson JA,Oldstone MB

    更新日期:1988-08-01 00:00:00

  • Complete genome sequence of a Newcastle disease virus strain isolated from broiler breeder flocks in China.

    abstract::In 2010 and 2011, several devastating Newcastle disease (ND) outbreaks occurred in China, affecting broilers, layers, and breeders. The CK-JSX1-201005 virus was isolated from broiler breeder flocks vaccinated with the classical ND virus (NDV) vaccine program, but laying rate decreased from 80% to 30 to 40% in the clin...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.02314-12

    authors: Chen F,Liu J,Liu D,Yan Z,Ji J,Qin J,Li H,Ma J,Bi Y,Xie Q

    更新日期:2012-11-01 00:00:00

  • Differential requirement for cell fusion and virion formation in the pathogenesis of varicella-zoster virus infection in skin and T cells.

    abstract::The protein product of varicella-zoster virus (VZV) ORF47 is a serine/threonine protein kinase and tegument component. Evaluation of two recombinants of the Oka strain, rOka47DeltaC, with a C-terminal truncation of ORF47, and rOka47D-N, with a point mutation in the conserved kinase motif, showed that ORF47 kinase func...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.78.23.13293-13305.2004

    authors: Besser J,Ikoma M,Fabel K,Sommer MH,Zerboni L,Grose C,Arvin AM

    更新日期:2004-12-01 00:00:00

  • Unique features of hepatitis C virus capsid formation revealed by de novo cell-free assembly.

    abstract::The assembly of hepatitis C virus (HCV) is poorly understood, largely due to the lack of mammalian cell culture systems that are easily manipulated and produce high titers of virus. This problem is highlighted by the inability of the recently established HCV replicon systems to support HCV capsid assembly despite high...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.78.17.9257-9269.2004

    authors: Klein KC,Polyak SJ,Lingappa JR

    更新日期:2004-09-01 00:00:00

  • Effect of internal viral sequences on the utility of retroviral vectors.

    abstract::Expression of the human ADA cDNA encoded by the Moloney murine leukemia virus spliced RNA form is enhanced by intron-contained sequences. The presence of sequences corresponding to the viral gag gene in a Moloney murine leukemia virus-based vector results in the generation of 10- to 40-fold higher titers of virus. ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.61.5.1647-1650.1987

    authors: Armentano D,Yu SF,Kantoff PW,von Ruden T,Anderson WF,Gilboa E

    更新日期:1987-05-01 00:00:00

  • Assembly and processing of avian retroviral gag polyproteins containing linked protease dimers.

    abstract::Assembly and maturation of retroviral particles requires the aggregation and controlled proteolytic cleavage of polyprotein core precursors by a precursor-encoded protease (PR). Active, mature retroviral PR is a dimer, and the accumulation of precursors at sites of assembly may facilitate subunit interaction and subse...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.65.11.6165-6172.1991

    authors: Burstein H,Bizub D,Skalka AM

    更新日期:1991-11-01 00:00:00

  • Pseudorabies virus avirulent strains fail to express a major glycoprotein.

    abstract::The unique short (Us) region of the pseudorabies virus (PRV) genome, which displays high transcriptional activity during the late phase of infection and has been found to code for glycoproteins, is partially deleted in the genomes of three vaccine strains (A57, Norden, and NIA-4). This deletion is located in the SalI ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.56.1.307-311.1985

    authors: Mettenleiter TC,Lukàcs N,Rziha HJ

    更新日期:1985-10-01 00:00:00

  • Temporal Characterization of Marburg Virus Angola Infection following Aerosol Challenge in Rhesus Macaques.

    abstract:UNLABELLED:Marburg virus (MARV) infection is a lethal hemorrhagic fever for which no licensed vaccines or therapeutics are available. Development of appropriate medical countermeasures requires a thorough understanding of the interaction between the host and the pathogen and the resulting disease course. In this study,...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01147-15

    authors: Lin KL,Twenhafel NA,Connor JH,Cashman KA,Shamblin JD,Donnelly GC,Esham HL,Wlazlowski CB,Johnson JC,Honko AN,Botto MA,Yen J,Hensley LE,Goff AJ

    更新日期:2015-10-01 00:00:00

  • In vivo assay of p53 function in homologous recombination between simian virus 40 chromosomes.

    abstract::To investigate a possible role of p53 in DNA exchange mechanisms, we have developed a model system which allows us to quantify homologous recombination rates in eukaryotic cells. We generated two types of simian virus 40 (SV40) whose genomes were mutated in such a way that upon double infection of monkey cells, virus ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.70.2.737-744.1996

    authors: Wiesmüller L,Cammenga J,Deppert WW

    更新日期:1996-02-01 00:00:00

  • Chromosomal localization of the Moloney sarcoma virus mouse cellular (c-mos) sequence.

    abstract::The Moloney sarcoma virus-specific onc gene, referred to as v-mos, was used as probe to hybridize to restricted DNAs from various mouse-Chinese hamster hybrid cell lines. These hybrid cells contain, in addition to all of the Chinese hamster chromosomes, various numbers (less than a full complement) of mouse chromosome...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.44.2.752-754.1982

    authors: Swan D,Oskarsson M,Keithley D,Ruddle FH,D'Eustachio P,Vande Woude GF

    更新日期:1982-11-01 00:00:00

  • Distribution of Hepatitis B Virus Nuclear DNA.

    abstract::Chronic hepatitis B affects over 300 million people who are at risk of developing liver cancer. The basis for the persistence of hepatitis B virus (HBV) in hepatocytes, even in the presence of available antiviral therapies, lies in the accumulation of covalently closed circular DNA (cccDNA) in nuclei of infected cells...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01391-17

    authors: Li M,Sohn JA,Seeger C

    更新日期:2017-12-14 00:00:00