A Common histone modification code on C4 genes in maize and its conservation in Sorghum and Setaria italica.

Abstract:

:C4 photosynthesis evolved more than 60 times independently in different plant lineages. Each time, multiple genes were recruited into C4 metabolism. The corresponding promoters acquired new regulatory features such as high expression, light induction, or cell type-specific expression in mesophyll or bundle sheath cells. We have previously shown that histone modifications contribute to the regulation of the model C4 phosphoenolpyruvate carboxylase (C4-Pepc) promoter in maize (Zea mays). We here tested the light- and cell type-specific responses of three selected histone acetylations and two histone methylations on five additional C4 genes (C4-Ca, C4-Ppdk, C4-Me, C4-Pepck, and C4-RbcS2) in maize. Histone acetylation and nucleosome occupancy assays indicated extended promoter regions with regulatory upstream regions more than 1,000 bp from the transcription initiation site for most of these genes. Despite any detectable homology of the promoters on the primary sequence level, histone modification patterns were highly coregulated. Specifically, H3K9ac was regulated by illumination, whereas H3K4me3 was regulated in a cell type-specific manner. We further compared histone modifications on the C4-Pepc and C4-Me genes from maize and the homologous genes from sorghum (Sorghum bicolor) and Setaria italica. Whereas sorghum and maize share a common C4 origin, C4 metabolism evolved independently in S. italica. The distribution of histone modifications over the promoters differed between the species, but differential regulation of light-induced histone acetylation and cell type-specific histone methylation were evident in all three species. We propose that a preexisting histone code was recruited into C4 promoter control during the evolution of C4 metabolism.

journal_name

Plant Physiol

journal_title

Plant physiology

authors

Heimann L,Horst I,Perduns R,Dreesen B,Offermann S,Peterhansel C

doi

10.1104/pp.113.216721

subject

Has Abstract

pub_date

2013-05-01 00:00:00

pages

456-69

issue

1

eissn

0032-0889

issn

1532-2548

pii

pp.113.216721

journal_volume

162

pub_type

杂志文章
  • Characterization and Cloning of Grape Circular RNAs Identified the Cold Resistance-Related Vv-circATS1.

    abstract::Circular RNAs (circRNAs) are widely distributed and play essential roles in a series of developmental processes, although none have been identified or characterized in grapevines (Vitis vinifera). In this study, we characterized the function of grape circRNA and uncovered thousands of putative back-splicing sites by g...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.18.01331

    authors: Gao Z,Li J,Luo M,Li H,Chen Q,Wang L,Song S,Zhao L,Xu W,Zhang C,Wang S,Ma C

    更新日期:2019-06-01 00:00:00

  • Phosphorylation of the D1 photosystem II reaction center protein is controlled by an endogenous circadian rhythm.

    abstract::The light dependence of D1 phosphorylation is unique to higher plants, being constitutive in cyanobacteria and algae. In a photoautotrophic higher plant, Spirodela oligorrhiza, grown in greenhouse conditions under natural diurnal cycles of solar irradiation, the ratio of phosphorylated versus total D1 protein (D1-P in...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.013441

    authors: Booij-James IS,Swegle WM,Edelman M,Mattoo AK

    更新日期:2002-12-01 00:00:00

  • Salinity effects on photosynthesis in isolated mesophyll cells of cowpea leaves.

    abstract::Mesophyll cells from leaves of cowpea (Vigna unquiculata [L.] Walp.) plants grown under saline conditions were isolated and used for the determination of photosynthetic CO(2) fixation. Maximal CO(2) fixation rate was obtained when the osmotic potential of both cell isolation and CO(2) fixation assay media were close t...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.91.2.493

    authors: Plaut Z,Grieve CM,Federman E

    更新日期:1989-10-01 00:00:00

  • Molecular identification of an Arabidopsis S-adenosylmethionine transporter. Analysis of organ distribution, bacterial expression, reconstitution into liposomes, and functional characterization.

    abstract::Despite much study of the role of S-adenosylmethionine (SAM) in the methylation of DNA, RNA, and proteins, and as a cofactor for a wide range of biosynthetic processes, little is known concerning the intracellular transport of this essential metabolite. Screening of the Arabidopsis (Arabidopsis thaliana) genome yielde...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.106.086975

    authors: Palmieri L,Arrigoni R,Blanco E,Carrari F,Zanor MI,Studart-Guimaraes C,Fernie AR,Palmieri F

    更新日期:2006-11-01 00:00:00

  • Expression of tobacco carbonic anhydrase in the C4 dicot flaveria bidentis leads to increased leakiness of the bundle sheath and a defective CO2-concentrating mechanism

    abstract::Flaveria bidentis (L.) Kuntze, a C4 dicot, was genetically transformed with a construct encoding the mature form of tobacco (Nicotiana tabacum L.) carbonic anhydrase (CA) under the control of a strong constitutive promoter. Expression of the tobacco CA was detected in transformant whole-leaf and bundle-sheath cell (bs...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.117.3.1071

    authors: Ludwig M,von Caemmerer S,Dean Price G,Badger MR,Furbank RT

    更新日期:1998-07-01 00:00:00

  • Regulation of Carbon Partitioning to Respiration during Dark Ammonium Assimilation by the Green Alga Selenastrum minutum.

    abstract::The assimilation of NH(4) (+) causes a rapid increase in respiration to provided carbon skeletons for amino acid synthesis. In this study we propose a model for the regulation of carbon partitioning from starch to respiration and N assimilation in the green alga Selenastrum minutum. We provide evidence for both a cyto...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.93.1.166

    authors: Turpin DH,Botha FC,Smith RG,Feil R,Horsey AK,Vanlerberghe GC

    更新日期:1990-05-01 00:00:00

  • Characterization of P69E and P69F, two differentially regulated genes encoding new members of the subtilisin-like proteinase family from tomato plants.

    abstract::Subtilisin-like proteins represent an ancient family of serine proteases that are extremely widespread in living organisms. We report here the structure and genomic organization of two new transcriptionally active genes encoding proteins that belong to the P69 family of subtilisin-like proteases from tomato (Lycopersi...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.122.1.67

    authors: Jordá L,Conejero V,Vera P

    更新日期:2000-01-01 00:00:00

  • Endoplasmic reticulum as a site of phenylpropanoid and flavonoid metabolism in hippeastrum.

    abstract::The nature of bound forms of enzymes of phenylpropanoid and flavonoid metabolism have been investigated in Hippeastrum CV Dutch Red Hybrid. Particulate components of petal homogenates were fractionated on sucrose gradients and the EDTA shift method was employed to characterize membranes of the endoplasmic reticulum. I...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.74.4.901

    authors: Wagner GJ,Hrazdina G

    更新日期:1984-04-01 00:00:00

  • Effect of phosphoenolpyruvate and oxaloacetate on ca uptake by isolated mung bean mitochondria.

    abstract::Phosphoenolpyruvate partially inhibits the accumulation of Ca(2+) in isolated mung bean (Phaseolus aureus Roxb.) mitochondria. Succinate-supported Ca(2+) uptake is twice as sensitive to phosphoenolpyruvate inhibition as is NADH- or malate/pyruvate-supported Ca(2+) uptake. Pyruvate, atractylate, and ATP, but not ITP, r...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.59.2.126

    authors: Graesser RJ

    更新日期:1977-02-01 00:00:00

  • Making Epidermal Bladder Cells Bigger: Developmental- and Salinity-Induced Endopolyploidy in a Model Halophyte.

    abstract::Endopolyploidy occurs when DNA replication takes place without subsequent mitotic nuclear division, resulting in cell-specific ploidy levels within tissues. In plants, endopolyploidy plays an important role in sustaining growth and development, but only a few studies have demonstrated a role in abiotic stress response...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.18.00033

    authors: Barkla BJ,Rhodes T,Tran KT,Wijesinghege C,Larkin JC,Dassanayake M

    更新日期:2018-06-01 00:00:00

  • Turnover of Galactans and Other Cell Wall Polysaccharides during Development of Flax Plants.

    abstract::We investigated the synthesis and turnover of cell wall polysaccharides of the flax (Linum usitatissimum L.) plant during development of the phloem fibers. One-month-old flax plants were exposed to a 40-min pulse with 14CO2 followed by 8-h, 24-h, and 1-month periods of chase with ambient CO2, and radioactivity in cell...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.114.2.723

    authors: Gorshkova TA,Chemikosova SB,Lozovaya VV,Carpita NC

    更新日期:1997-06-01 00:00:00

  • Purification and characterization of aspartate aminotransferase isoenzymes from carrot suspension cultures.

    abstract::Three aspartate aminotransferase isoenzymes were identified from extracts of carrot (Daucus carota L.) cell suspension cultures. These isoenzymes were separated by DEAE chromatography and were analyzed on native gradient polyacrylamide gels. The relative molecular weights of the isoenzymes were 111,000 +/- 5000, 105,0...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.92.3.587

    authors: Turano FJ,Wilson BJ,Matthews BF

    更新日期:1990-03-01 00:00:00

  • Adaptation to CO(2) Level and Changes in the Phosphorylation of Thylakoid Proteins during the Cell Cycle of Chlamydomonas reinhardtii.

    abstract::The photosynthetic performance of synchronously grown Chlamydomonas reinhardtii alternated rhythmically during the cell cycle. The activity of the "CO(2) concentrating mechanism" including the ability to accumulate CO(2) internally and the activity of carbonic anhydrase peaked after 6 to 9 hours of light and reached m...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.80.2.604

    authors: Marcus Y,Schuster G,Michaels A,Kaplan A

    更新日期:1986-02-01 00:00:00

  • A Seed Storage Protein with Possible Self-Affinity through Lectin-Like Binding.

    abstract::The primary storage protein of oat (Avena sativa L.) seeds, globulin, was shown to have a specific carbohydrate-binding activity. The globulin was capable of hemagglutinating rabbit red blood cells and this hemagglutination was inhibited by the beta-glucan, laminarin, as well as by carbohydrate which had been cleaved ...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.74.3.675

    authors: Langston-Unkefer PJ,Gade W

    更新日期:1984-03-01 00:00:00

  • Expression of Escherichia coli glycogen synthase in the tubers of transgenic potatoes (Solanum tuberosum) results in a highly branched starch.

    abstract::A chimeric gene containing the patatin promoter and the transit-peptide region of the small-subunit carboxylase gene was utilized to direct expression of Escherichia coli glycogen synthase (glgA) to potato (Solanum tuberosum) tuber amyloplasts. Expression of the glgA gene product in tuber amyloplasts was between 0.007...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.104.4.1159

    authors: Shewmaker CK,Boyer CD,Wiesenborn DP,Thompson DB,Boersig MR,Oakes JV,Stalker DM

    更新日期:1994-04-01 00:00:00

  • Effect of Inhibition of Glycosylation on the Appearance of a 60 kD Membrane Glycopolypeptide in Endomembrane Fractions of Soybean Root.

    abstract::Endomembrane (endoplasmic reticulum, Golgi apparatus, plasma membrane) proteins of soybean (Glycine max) root cells are highly glycosylated. We investigated whether N-linked oligosaccharide moieties are essential for the correct intracellular transport of plant endomembrane glycoproteins. Excised roots were incubated ...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.89.1.299

    authors: Lafayette PR,Travis RL

    更新日期:1989-01-01 00:00:00

  • Photosynthesis: action spectra for leaves in normal and low oxygen.

    abstract::The action spectrum of apparent photosynthesis for attached radish (Raphanus sativus L. var. Early Scarlet Globe) and corn (Zea mays L. var. Pride V.) leaves was measured at 300 mul/l CO(2) and both 21% and 2% O(2). The spectra were measured at light intensities where apparent photosynthesis was proportional to intens...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.44.5.678

    authors: Bulley NR,Nelson CD,Tregunna EB

    更新日期:1969-05-01 00:00:00

  • The Anti-nptII Gene (A Potential Negative Selectable Marker for Plants).

    abstract::An efficient negative selection procedure is crucial to the isolation of rare homologous recombinants in gene targeting. Although gene targeting is a common practice in lower eukaryotes and is becoming routine in mammals, its application to plants has not been achieved. In this report, we have evaluated an antisense c...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.102.1.287

    authors: Xiang C,Guerra DJ

    更新日期:1993-05-01 00:00:00

  • The SPOROCYTELESS/NOZZLE gene is involved in controlling stamen identity in Arabidopsis.

    abstract::The stamen, which consists of an anther and a filament, is the male reproductive organ in a flower. The specification of stamen identity in Arabidopsis (Arabidopsis thaliana) is controlled by a combination of the B genes APETALA3 (AP3) and PISTILLATA, the C gene AGAMOUS (AG), and the E genes SEPALLATA1 (SEP1) to SEP4....

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.109.145896

    authors: Liu X,Huang J,Parameswaran S,Ito T,Seubert B,Auer M,Rymaszewski A,Jia G,Owen HA,Zhao D

    更新日期:2009-11-01 00:00:00

  • Chill-Induced Changes in the Activity and Abundance of the Vacuolar Proton-Pumping Pyrophosphatase from Mung Bean Hypocotyls.

    abstract::Changes in the properties of extractable vacuolar H+-pumping pyrophosphatase (V-PPase) and vacuolar ATPase activities in chilling-sensitive seedlings of mung bean (Vigna radiata) were investigated. Following chilling at 4[deg]C for 48 h, both hydrolytic and proton-pumping activities of the V-PPase increased 1.5- to 2-...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.109.2.659

    authors: Darley CP,Davies JM,Sanders D

    更新日期:1995-10-01 00:00:00

  • Potassium and sodium absorption kinetics in roots of two tomato species : lycopersicon esculentum and lycopersicon cheesmanii.

    abstract::Excised roots of the tomato species, Lycopersicon esculentum Mill. cv Walter (the commercial species) and of Lycopersicon cheesmanii ssp. minor (Hook.) C.H. Mull. (a wild species from the Galapagos Islands), were used in comparative studies of their absorption of K(+) and Na(+). Uptake of (86)Rb-labeled K(+) and (22)N...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.79.4.1064

    authors: Wrona AF,Epstein E

    更新日期:1985-12-01 00:00:00

  • Decoys Untangle Complicated Redundancy and Reveal Targets of Circadian Clock F-Box Proteins.

    abstract::Eukaryotic circadian clocks utilize the ubiquitin proteasome system to precisely degrade clock proteins. In plants, the F-box-type E3 ubiquitin ligases ZEITLUPE (ZTL), FLAVIN-BINDING, KELCH REPEAT, F-BOX1 (FKF1), and LOV KELCH PROTEIN2 (LKP2) regulate clock period and couple the clock to photoperiodic flowering in res...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.18.00331

    authors: Lee CM,Feke A,Li MW,Adamchek C,Webb K,Pruneda-Paz J,Bennett EJ,Kay SA,Gendron JM

    更新日期:2018-07-01 00:00:00

  • Slow Inactivation of Ribulosebisphosphate Carboxylase during Catalysis Is Caused by Accumulation of a Slow, Tight-Binding Inhibitor at the Catalytic Site.

    abstract::The slow inactivation which accompanies catalysis by higher-plant ribulose-P(2) carboxylase-oxygenase (Rubisco) in vitro was only partially reversed when the enzyme was gel filtered to remove small molecules. However, gel filtration or dialysis in the presence of high SO(2-) (4) concentrations induced full recovery. T...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.93.4.1390

    authors: Edmondson DL,Badger MR,Andrews TJ

    更新日期:1990-08-01 00:00:00

  • Characterization of two isoenzymes of lipoxygenase from bush beans.

    abstract::Two isoenzymes of lipoxygenase, a and b, have been obtained from bush beans (Phaseolus vulgaris) as electrophoretically homogeneous proteins. Both proteins have a molecular weight of 100,000, contain 1 atom of iron, and appear to be composed of a single peptide chain. However, these enzymes appear to differ in some ot...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.59.4.695

    authors: Hurt GB,Axelrod B

    更新日期:1977-04-01 00:00:00

  • Banana Ripening: Implications of Changes in Internal Ethylene and CO(2) Concentrations, Pulp Fructose 2,6-Bisphosphate Concentration, and Activity of Some Glycolytic Enzymes.

    abstract::In ripening banana (Musa acuminata L. [AAA group, Cavandish subgroup] cv. Valery) fruit, the steady state concentration of the glycolytic regulator fructose 2,6-bisphosphate (Fru 2,6-P(2)) underwent a transient increase 2 to 3 hours before the respiratory rise, but coincident with the increase in ethylene synthesis. F...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.85.1.277

    authors: Beaudry RM,Paz N,Black CC,Kays SJ

    更新日期:1987-09-01 00:00:00

  • Properties and Ultrastructure of Phycoerythrin From Porphyridium cruentum.

    abstract::Phycoerythrin, a photosynthetic accessory pigment, was isolated from Porphyridium cruentum and examined by electron microscopy and disc gel electrophoresis. The absorption monomer, with maxima at 563, 545, and a shoulder at 500 nm, has a molecular weight of about 300,000. With phosphotungstic acid staining it appears ...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.44.11.1629

    authors: Gantt E

    更新日期:1969-11-01 00:00:00

  • The role of cytosolic potassium and pH in the growth of barley roots

    abstract::In an earlier paper we showed that in fully developed barley (Hordeum vulgare L.) root epidermal cells a decrease in cytosolic K+ was associated with an acidification of the cytosol (D.J. Walker, R. A. Leigh, A.J. Miller [1996] Proc Natl Acad Sci USA 93: 10510-10514). To show that these changes in cytosolic ion concen...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.118.3.957

    authors: Walker DJ,Black CR,Miller AJ

    更新日期:1998-11-01 00:00:00

  • Differential control of ethylene responses by GREEN-RIPE and GREEN-RIPE LIKE1 provides evidence for distinct ethylene signaling modules in tomato.

    abstract::The factors that mediate specific responses to the plant hormone ethylene are not fully defined. In particular, it is not known how signaling at the receptor complex can control distinct subsets of ethylene responses. Mutations at the Green-ripe (Gr) and reversion to ethylene sensitivity1 (rte1) loci, which encode hom...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.112.205476

    authors: Ma Q,Du W,Brandizzi F,Giovannoni JJ,Barry CS

    更新日期:2012-12-01 00:00:00

  • Gibberellins promote trichome formation by Up-regulating GLABROUS1 in arabidopsis

    abstract::Trichome development is dependent on gibberellin (GA) signaling in Arabidopsis thaliana. Using the GA-deficient mutant ga1-3, the GA-response mutant spy-5, and uniconazol (a GA-biosynthesis inhibitor), we show that the GA level response correlates positively with both trichome number and trichome branch number. Two ge...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.117.2.375

    authors: Perazza D,Vachon G,Herzog M

    更新日期:1998-06-01 00:00:00

  • Mode of action of a herbicide : johnsongrass and methanearsonic Acid.

    abstract::Johnsongrass (Sorghum halepense (L.) Pers.) is sensitive to methanearsonate, foliar application resulting in a topkill. Investigation of the pattern of photosynthesis by radioautography revealed an accumulation of malate in methanearsonate-treated leaves. Accumulation of malate was attributed to an inhibition of NADP(...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.71.2.235

    authors: Knowles FC,Benson AA

    更新日期:1983-02-01 00:00:00