Observation of manganese(II)-ligand superhyperfine couplings in complexes with proteins by electron spin-echo spectroscopy.

Abstract:

:Pulsed electron paramagnetic resonance spectroscopy has been used to detect Mn(II)-ligand superhyperfine couplings in complexes with creatine kinase and in the Mn(II) metalloprotein concanavalin A. Electron spin-echo envelopes from Mn(II), bound in these complexes, are modulated by superhyperfine interactions between Mn(II) and nearby, weakly coupled nuclear spins. The characteristic frequencies of the modulations were obtained by Fourier transformation of the three-pulse, spin-echo envelopes. In transition-state analogue complexes of creatine kinase (enzyme-MnIIADP-anion-creatine), superhyperfine interactions from the directly coordinated nitrogen of the thiocyanate ligand give envelope modulations. The source of the modulations was confirmed by measurements with the 14N and 15N forms of thiocyanate. On the other hand, the nitrogen of coordinated nitrate, which is two bonds removed from the paramagnetic center, does not produce detectable modulations. In spectra for Mn(II) concanavalin A, envelope modulations are detected due to the nitrogen of the coordinated histidine residue. Complexes prepared in 2H2O give strong signals due to weakly coupled 2H. For Mn(II)-doped single crystals of sodium pyrophosphate, signals are observed in the frequency domain spectra that are due to coupling from 31P. Phosphorus signals from the ADP ligand in complexes with creatine kinase show approximately the same coupling constant but have a much broader line width.

journal_name

Biochemistry

journal_title

Biochemistry

authors

LoBrutto R,Smithers GW,Reed GH,Orme-Johnson WH,Tan SL,Leigh JS Jr

doi

10.1021/bi00367a046

subject

Has Abstract

pub_date

1986-09-23 00:00:00

pages

5654-60

issue

19

eissn

0006-2960

issn

1520-4995

journal_volume

25

pub_type

杂志文章
  • Oxidation of the Cyanobactin Precursor Peptide Is Independent of the Leader Peptide and Operates in a Defined Order.

    abstract::The five-membered nitrogen plus heteroatom rings known as azolines or in their oxidized form as azoles are very common in natural products and drugs. The oxidation of thiazoline to thiazole in the cyanobactin class of natural products is one of the several important transformations that are known to alter the biologic...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.8b00835

    authors: Gao S,Ge Y,Bent AF,Schwarz-Linek U,Naismith JH

    更新日期:2018-10-16 00:00:00

  • Effect of Cholesterol on the Interaction of Cytochrome P450 Substrate Drug Chlorzoxazone with the Phosphatidylcholine Bilayer.

    abstract::Many drugs are oxidized by membrane protein cytochrome P450 (CYP) enzymes during their metabolism process. CYPs are located mainly in endoplasmic reticulum (ER) membranes. Recent studies have suggested that CYP substrate drugs first bind the lipid bilayers of ER membranes and then the drugs reach the active site of CY...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.6b00286

    authors: Yamada A,Shimizu N,Hikima T,Takata M,Kobayashi T,Takahashi H

    更新日期:2016-07-19 00:00:00

  • Mechanism of transfer of reduced nicotinamide adenine dinucleotide among dehydrogenases. Transfer rates and equilibria with enzyme-enzyme complexes.

    abstract::The direct transfer of NADH between A-B pairs of dehydrogenases and also the dissociation of NADH from individual E-NADH complexes have been investigated by transient stopped-flow kinetic techniques. Such A-B transfers of NADH occur without the intermediate dissociation of coenzyme into the aqueous solvent environment...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00379a006

    authors: Srivastava DK,Bernhard SA

    更新日期:1987-03-10 00:00:00

  • NMR analysis of covalent intermediates in thiamin diphosphate enzymes.

    abstract::Enzymic catalysis proceeds via intermediates formed in the course of substrate conversion. Here, we directly detect key intermediates in thiamin diphosphate (ThDP)-dependent enzymes during catalysis using (1)H NMR spectroscopy. The quantitative analysis of the relative intermediate concentrations allows the determinat...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi034465o

    authors: Tittmann K,Golbik R,Uhlemann K,Khailova L,Schneider G,Patel M,Jordan F,Chipman DM,Duggleby RG,Hübner G

    更新日期:2003-07-08 00:00:00

  • Induction of conductance heterogeneity in gramicidin channels.

    abstract::In previous work from our laboratory, 5-10% of the channels formed by [Val1]gramicidin A have conductances that fall outside the narrow range that conventionally has defined the standard gramicidin channel [e.g., see Russell et al. (1986) Biophys. J. 49, 673]. Reports from other laboratories, however, show that up to ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00442a007

    authors: Sawyer DB,Koeppe RE 2nd,Andersen OS

    更新日期:1989-08-08 00:00:00

  • Structure-function relationship of islet-activating protein, pertussis toxin: biological activities of hybrid toxins reconstituted from native and methylated subunits.

    abstract::Islet-activating protein (IAP), pertussis toxin, is a hexameric protein composed of an A protomer and a B oligomer, the residual pentamer having such a subunit assembly that two different dimers, dimer 1 and dimer 2, are connected with each other by means of the smallest C subunit. Incubation of IAP with formaldehyde ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00354a025

    authors: Nogimori K,Tamura M,Yajima M,Hashimura N,Ishii S,Ui M

    更新日期:1986-03-25 00:00:00

  • Kinetic comparison of bovine blood coagulation factors IXa alpha and IXa beta toward bovine factor X.

    abstract::The Vmax/Km (microM -1 min -1.) for bovine factor X activation by bovine factor IXa alpha, in the presence of sufficient [Ca2+] to saturate the initial reaction rate, was 0.007. When factor IXa beta was substituted for factor IXa alpha in this reaction, the Vmax/Km decreased to 0.001, suggesting that factor IXa alpha ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00286a007

    authors: Link RP,Castellino FJ

    更新日期:1983-08-16 00:00:00

  • Stabilities of nucleotide loops bridging the pyrimidine strands in DNA pyrimidine.purine.pyrimidine triplexes: special stability of the CTTTG loop.

    abstract::Recent studies of DNA hairpin loops have shown considerable dependence of the stability on the sequence of the loop [Senior, M., Jones, R. A., & Breslauer, K. J. (1988a) Proc. Natl. Acad. Sci. U.S.A. 85, 6242-6246; Xodo, L. E., Manzini, G., Quadrifoglio, F., van der Marel, G., & van Boom, J. H. (1989) Biochimie 71, 79...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00181a026

    authors: Wang S,Booher MA,Kool ET

    更新日期:1994-04-19 00:00:00

  • Secondary electron transfer processes in membranes of Heliobacillus mobilis.

    abstract::Picosecond transient absorption difference spectroscopic experiments were performed on membranes of the antenna/reaction center complex of Heliobacillus mobilis to study the electron transfer processes. Particular emphasis was placed on the blue spectral region, where the difference spectra of iron-sulfur centers and ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00039a036

    authors: Lin S,Chiou HC,Blankenship RE

    更新日期:1995-10-03 00:00:00

  • Essential sulfhydryl for reduced nicotinamide adenine dinucleotide binding in D-beta-hydroxybutyrate dehydrogenase.

    abstract::Chemical derivatization studies have been directed at the sulfhydryl group of D-beta-hydroxybutyrate dehydrogenase, a lipid-requiring enzyme. Reaction with N-ethylmaleimide leads to progressive and parallel loss of both enzymic activity and coenzyme binding. Both functions are lost when 1 equiv of sulfhydryl is deriva...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00564a021

    authors: Latruffe N,Brenner SC,Fleischer S

    更新日期:1980-11-11 00:00:00

  • Noncompetitive Allosteric Antagonism of Death Receptor 5 by a Synthetic Affibody Ligand.

    abstract::Fatty acid-induced upregulation of death receptor 5 (DR5) and its cognate ligand, tumor necrosis factor-related apoptosis-inducing ligand (TRAIL), promotes hepatocyte lipoapoptosis, which is a key mechanism in the progression of fatty liver disease. Accordingly, inhibition of DR5 signaling represents an attractive str...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.0c00529

    authors: Vunnam N,Szymonski S,Hirsova P,Gores GJ,Sachs JN,Hackel BJ

    更新日期:2020-10-13 00:00:00

  • Conformational changes in the amino-terminal helix of the G protein alpha(i1) following dissociation from Gbetagamma subunit and activation.

    abstract::G protein alpha subunits mediate activation of signaling pathways through G protein-coupled receptors (GPCR) by virtue of GTP-dependent conformational rearrangements. It is known that regions of disorder in crystal structures can be indicative of conformational flexibility within a molecule, and there are several such...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0255726

    authors: Medkova M,Preininger AM,Yu NJ,Hubbell WL,Hamm HE

    更新日期:2002-08-06 00:00:00

  • Structural determinants of HscA peptide-binding specificity.

    abstract::The Hsp70-class molecular chaperone HscA interacts specifically with a conserved (99)LPPVK(103) motif of the iron-sulfur cluster scaffold protein IscU. We used a cellulose-bound peptide array to perform single-site saturation substitution of peptide residues corresponding to Glu(98)-Ile(104) of IscU to determine posit...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0606187

    authors: Tapley TL,Cupp-Vickery JR,Vickery LE

    更新日期:2006-07-04 00:00:00

  • An engineered disulfide cross-link accelerates the refolding rate of calcium-free subtilisin by 850-fold.

    abstract::The mature form of subtilisin is an unusual example of a monomeric protein with a high kinetic barrier to folding and unfolding. Using site-directed mutagenesis of subtilisin BPN', we are attempting to determine the physical and energetic nature of the kinetic barrier. The high-affinity calcium-binding site A has been...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00090a012

    authors: Strausberg S,Alexander P,Wang L,Gallagher T,Gilliland G,Bryan P

    更新日期:1993-10-05 00:00:00

  • Mechanistic diversity in a metalloenzyme superfamily.

    abstract::It is now appreciated that the relationships of proteins, particularly enzymes, within a protein superfamily can be understood not only in terms of their sequence similarities and three-dimensional structures but also by chemical threads that relate their functional attributes. The mechanistic ties among superfamily m...

    journal_title:Biochemistry

    pub_type: 杂志文章,评审

    doi:10.1021/bi001814v

    authors: Armstrong RN

    更新日期:2000-11-14 00:00:00

  • Fidelity of DNA recognition by the EcoRV restriction/modification system in vivo.

    abstract::The EcoRV restriction/modification system consists of two enzymes that recognize the DNA sequence GATATC. The EcoRV restriction endonuclease cleaves DNA at this site, but the DNA of Escherichia coli carrying the EcoRV system is protected from this reaction by the EcoRV methyltransferase. However, in vitro, the EcoRV n...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00500a003

    authors: Taylor JD,Goodall AJ,Vermote CL,Halford SE

    更新日期:1990-12-04 00:00:00

  • Effects of certain 5'-substituted adenosines on polyamine synthesis: selective inhibitors of spermine synthase.

    abstract::A number of nucleosides related to S-adenosylmethionine were tested for their inhibitory action on three enzymes involved in the biosynthesis of polyamines. The particular objective of the experiments was to determine whether any of the compounds could be used as selective inhibitors of the synthesis of spermine by sp...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00362a016

    authors: Pegg AE,Coward JK,Talekar RR,Secrist JA 3rd

    更新日期:1986-07-15 00:00:00

  • Distinct phosphate backbone contacts revealed by some mutant peptides of zinc finger protein Spl: effect of protein-induced bending on DNA recognition.

    abstract::By using some mutant peptides of transcription factor Spl, phosphate backbone contacts with the DNA binding protein containing three zinc fingers have been investigated by alkylation interference, circular permutation, DNase I footprinting, and methylation protection methods. The ethylation interference analyses of Sp...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi952530r

    authors: Nagaoka M,Sugiura Y

    更新日期:1996-07-02 00:00:00

  • O6-methylguanine in DNA inhibits replication in vitro by human cell extracts.

    abstract::To study the effects of methylation damage on DNA replication in vitro, the plasmid pSVori containing the SV40 origin of replication was reacted with N-methyl-N-nitrosourea and used as a substrate for SV40 T antigen dependent replication by HeLa cell extracts. The plasmid was methylated with a range of N-methyl-N-nitr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00212a035

    authors: Ceccotti S,Dogliotti E,Gannon J,Karran P,Bignami M

    更新日期:1993-12-14 00:00:00

  • FeNO structure in distal pocket mutants of myoglobin based on resonance Raman spectroscopy.

    abstract::FeNO vibrational frequencies were investigated for a series of myoglobin mutants using isotope-edited resonance Raman spectra of (15/14)NO adducts, which reveal the FeNO and NO stretching modes. The latter give rise to doublet bands, as a result of Fermi resonances with coincident porphyrin vibrations; these doublets ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi026395b

    authors: Coyle CM,Vogel KM,Rush TS 3rd,Kozlowski PM,Williams R,Spiro TG,Dou Y,Ikeda-Saito M,Olson JS,Zgierski MZ

    更新日期:2003-05-06 00:00:00

  • Investigating the in Vitro Thermal Stability and Conformational Flexibility of Estrogen Receptors as Potential Key Factors of Their in Vivo Activity.

    abstract::Among hormone-inducible transcription factors, estrogen receptors (ERs) play important roles in tissue growth and differentiation, via either direct or indirect binding, in the nucleus, to specific DNA targets called estrogen responsive elements (EREs), or through nongenomic pathways. In humans, two estrogen receptor ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.5b00026

    authors: Le Grand A,André-Leroux G,Marteil G,Duval H,Sire O,Le Tilly V

    更新日期:2015-06-30 00:00:00

  • Mutations in the B12-binding region of methionine synthase: how the protein controls methylcobalamin reactivity.

    abstract::Vitamin B12-dependent methionine synthase catalyzes the transfer of a methyl group from methyltetrahydrofolate to homocysteine via the enzyme-bound cofactor methylcobalamin. To carry out this reaction, the enzyme must alternately stabilize six-coordinate methylcobalamin and four-coordinate cob(I)alamin oxidation state...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi952389m

    authors: Jarrett JT,Amaratunga M,Drennan CL,Scholten JD,Sands RH,Ludwig ML,Matthews RG

    更新日期:1996-02-20 00:00:00

  • Selective radiolabeling of cell surface proteins to a high specific activity.

    abstract::A procedure was developed for selective radiolabeling of membrane proteins on cells to higher specific activities than possible with available techniques. Cell surface amino groups were derivatized with 125I-(hydroxyphenyl)propionyl groups via 125I-sulfosuccinimidyl (hydroxyphenyl)propionate (125I-sulfo-SHPP). This re...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00377a014

    authors: Thompson JA,Lau AL,Cunningham DD

    更新日期:1987-02-10 00:00:00

  • Formation of a trypsin-borate-4-aminobutanol ternary complex.

    abstract::The formation of ternary complexes involving serine proteases, borate, and an alcohol has important implications for understanding the physiological actions of borate and for the development of tight binding inhibitors for this class of enzymes. Recent studies of a related enzyme, gamma-glutamyl transpeptidase, which ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi025583z

    authors: London RE,Gabel SA

    更新日期:2002-05-14 00:00:00

  • Ultrafast water dynamics at the interface of the polymerase-DNA binding complex.

    abstract::DNA polymerases slide on DNA during replication, and the interface must be mobile for various conformational changes. The role of lubricant interfacial water is not understood. In this report, we systematically characterize the water dynamics at the interface and in the active site of a tight binding polymerase (pol β...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi500810a

    authors: Yang Y,Qin Y,Ding Q,Bakhtina M,Wang L,Tsai MD,Zhong D

    更新日期:2014-08-26 00:00:00

  • Hydrolysis of monodisperse phosphatidylcholines by phospholipase A2 occurs on vessel walls and air bubbles.

    abstract::Hydrolysis of monodisperse short chain phosphatidylcholines, far below their critical micelle concentration, by phospholipase A2 (PLA2) and other interfacial enzymes is characterized. Results show that virtually all the observed hydrolysis by pancreatic and human inflammatory PLA2 occurs on surfaces of the reaction ve...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi990194z

    authors: Yu BZ,Berg OG,Jain MK

    更新日期:1999-08-10 00:00:00

  • Two-dimensional NMR characterization of the deoxymyoglobin heme pocket.

    abstract::Traditionally, assigning the heme protein resonances has relied heavily on the comparison of spectra arising from protein reconstituted with specifically deuterated hemes and the native form. Such an approach can identify tentatively the broad, overlapping signals in the Fe(II) high-spin heme protein spectra. Although...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00202a012

    authors: Busse SC,Jue T

    更新日期:1994-09-13 00:00:00

  • Inhibition of mouse erythroid band 3-mediated chloride transport by site-directed mutagenesis of histidine residues and its reversal by second site mutation of Lys 558, the locus of covalent H2DIDS binding.

    abstract::Substitution by site-directed mutagenesis of any one of the histidine residues H721, H837, and H852 by glutamine, or of H752 by serine, inhibits Cl- flux mediated by band 3 expressed in Xenopus oocytes. Mutation of Lys 558 (K558N), the site of covalent binding of H2DIDS (4,4'-diisothiocyanostilbene-2,2'-disulfonate) i...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00029a006

    authors: Müller-Berger S,Karbach D,König J,Lepke S,Wood PG,Appelhans H,Passow H

    更新日期:1995-07-25 00:00:00

  • High resolution proton nuclear magnetic resonance investigation of the structural and dynamic properties of d(C15A15)-d(T15G15).

    abstract::The high resolution proton nuclear magnetic resonance (NMR) spectra of the synthetic DNA block polymer d(C15A15)-d(T15G15) were studied in order to more completely understand telestability in DNA, and to provide fundamental NMR data on DNA helices and random coils. Spectra were measured in the spectral region from 0 t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00622a031

    authors: Early TA,Kearns DR,Burd JF,Larson JE,Wells RD

    更新日期:1977-02-08 00:00:00

  • Substrate binding and catalytic mechanism in ascorbate peroxidase: evidence for two ascorbate binding sites.

    abstract::The catalytic mechanism of recombinant soybean cytosolic ascorbate peroxidase (rsAPX) and a derivative of rsAPX in which a cysteine residue (Cys32) located close to the substrate (L-ascorbic acid) binding site has been modified to preclude binding of ascorbate [Mandelman, D., Jamal, J., and Poulos, T. L. (1998) Bioche...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0261591

    authors: Lad L,Mewies M,Raven EL

    更新日期:2002-11-19 00:00:00