Induction of conductance heterogeneity in gramicidin channels.

Abstract:

:In previous work from our laboratory, 5-10% of the channels formed by [Val1]gramicidin A have conductances that fall outside the narrow range that conventionally has defined the standard gramicidin channel [e.g., see Russell et al. (1986) Biophys. J. 49, 673]. Reports from other laboratories, however, show that up to 50% of [Val1]gramicidin channels have conductances that fall outside the range for standard channels [e.g., see Prasad et al. (1986) Biochemistry 25, 456]. This laboratory-to-laboratory variation in the distribution of gramicidin single-channel conductances suggests that the conductance variants are induced by some environmental factor(s) [Busath et al. (1987) Biophys. J. 51, 79]. In order to test whether extrinsic agents can induce such conductance heterogeneity, we examined the effects of nonionic or zwitterionic detergents upon gramicidin channel behavior. In phospholipid bilayers, detergent addition induces many changes in gramicidin channel behavior: all detergents tested increase the channel appearance rate and average duration; most detergents decrease the conductance of the standard channel; and all but one of the detergents increase the conductance heterogeneity. These results show that the conductance heterogeneity can result from environmental perturbations, thus providing a possible explanation for the laboratory-to-laboratory variation in the heterogeneity of gramicidin channels. In addition, the differential detergent effects suggest possible mechanisms by which detergents can induce the conformational perturbations that result in gramicidin single-channel conductance variations.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Sawyer DB,Koeppe RE 2nd,Andersen OS

doi

10.1021/bi00442a007

subject

Has Abstract

pub_date

1989-08-08 00:00:00

pages

6571-83

issue

16

eissn

0006-2960

issn

1520-4995

journal_volume

28

pub_type

杂志文章
  • Secondary electron transfer processes in membranes of Heliobacillus mobilis.

    abstract::Picosecond transient absorption difference spectroscopic experiments were performed on membranes of the antenna/reaction center complex of Heliobacillus mobilis to study the electron transfer processes. Particular emphasis was placed on the blue spectral region, where the difference spectra of iron-sulfur centers and ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00039a036

    authors: Lin S,Chiou HC,Blankenship RE

    更新日期:1995-10-03 00:00:00

  • Regulatory Implications of Structural Changes in Tyr201 of the Oxygen Sensor Protein FixL.

    abstract::FixL is a heme-based oxygen-sensing histidine kinase that induces the expression of nitrogen fixation genes under hypoxic conditions. Oxygen dissociation from heme iron in the sensor domain of FixL initiates protein conformational changes that are transmitted to the histidine kinase domain, activating autophosphorylat...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.6b00405

    authors: Yamawaki T,Ishikawa H,Mizuno M,Nakamura H,Shiro Y,Mizutani Y

    更新日期:2016-07-26 00:00:00

  • Mechanism of protein salting in and salting out by divalent cation salts: balance between hydration and salt binding.

    abstract::The preferential interactions of proteins with solvent components were studied in concentrated aqueous solutions of the sulfate, acetate, and chloride salts of Mg2+, Ba2+, Ca2+, Mn2+ and Ni2+ [except for CaSO4, BaSO4, Mn-(OAc)2, and Ni(OAc)2], and results were compared with those of the Na+ salts. It was found that, f...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00320a004

    authors: Arakawa T,Timasheff SN

    更新日期:1984-12-04 00:00:00

  • Measurement of spontaneous transfer and transbilayer movement of BODIPY-labeled lipids in lipid vesicles.

    abstract::An assay was developed to study the spontaneous transfer and transbilayer movement (flip-flop) of lipid analogs labeled with the fluorescent fatty acid, 5-(5,7-dimethyl BODIPY)-1-pentanoic acid (C5-DMB-) in large unilamellar lipid vesicles comprised of 1-palmitoyl-2-oleoyl phosphatidylcholine (POPC). The assay is base...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi970145r

    authors: Bai J,Pagano RE

    更新日期:1997-07-22 00:00:00

  • Thermodynamic cycle analysis and inhibitor design against beta-lactamase.

    abstract::Beta-lactamases are the most widespread resistance mechanism to beta-lactam antibiotics, such as the penicillins and cephalosporins. Transition-state analogues that bind to the enzymes with nanomolar affinities have been introduced in an effort to reverse the resistance conferred by these enzymes. To understand the or...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi035054a

    authors: Roth TA,Minasov G,Morandi S,Prati F,Shoichet BK

    更新日期:2003-12-16 00:00:00

  • Mechanism of yeast cytochrome b2 action. I. Thermodynamics and relaxation kinetics of the interaction between cytochrome b2 and oxalate.

    abstract::Oxalate is the strongest known inhibitor of yeast cytochrome b2 activity. We have used spectrophotometric titration, temperature-jump relaxation, and calorimetry in an investigation of the interaction between enzyme and inhibitor. The titration data are consistent with noncooperative binding to one site per subunit. T...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00647a002

    authors: Thusius D,Blazy B,Baudras A

    更新日期:1976-01-27 00:00:00

  • 3-Methyladenine and 7-methylguanine exhibit no preferential removal from the transcribed strand of the dihydrofolate reductase gene in Chinese hamster ovary B11 cells.

    abstract::The removal of cylclobutane pyrimidine dimers from cellular DNA occurs preferentially in actively transcribed genes of cells subjected to ultraviolet radiation. In contrast, reports concerning the transcription-dependent repair of N-methylpurines formed in cellular DNA following exposure to methylating agents are quit...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00005a037

    authors: Wang W,Sitaram A,Scicchitano DA

    更新日期:1995-02-07 00:00:00

  • Structural analysis of ribosomal protein L7/L12 by the heterobifunctional cross-linker 4-(6-formyl-3-azidophenoxy)butyrimidate.

    abstract::The structure of the dimeric form of the protein L7/L12 from ribosomes from Escherichia coli was studied by using the heterobifunctional cross-linker 4-(6-formyl-3-azidophenoxy)butyrimidate. The imidate group of the cross-linker reacts very specifically with Lys-51 of L7/L12. Subsequent cross-linking of this modified ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00507a057

    authors: Maassen JA,Schop EN,Möller W

    更新日期:1981-02-17 00:00:00

  • Structural characterization of azurin from Pseudomonas aeruginosa and some of its methionine-121 mutants.

    abstract::Azurin from Pseudomonas aeruginosa and two mutants where the methionine ligand has been mutated have been studied in order to directly investigate the functional and structural significance of this ligand in the blue copper proteins. Reduction potentials, X-ray absorption fine structure (XAFS), electron paramagnetic r...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00059a013

    authors: Murphy LM,Strange RW,Karlsson BG,Lundberg LG,Pascher T,Reinhammar B,Hasnain SS

    更新日期:1993-03-02 00:00:00

  • Comparison of two metal-dependent pyruvate aldolases related by convergent evolution: substrate specificity, kinetic mechanism, and substrate channeling.

    abstract::HpaI and BphI are two pyruvate class II aldolases found in aromatic meta-cleavage degradation pathways that catalyze similar reactions but are not related in sequence. Steady-state kinetic analysis of the aldol addition reactions and product inhibition assays showed that HpaI exhibits a rapid equilibrium random order ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi100251u

    authors: Wang W,Baker P,Seah SY

    更新日期:2010-05-04 00:00:00

  • Structural and functional analysis of the homing endonuclease PI-sceI by limited proteolytic cleavage and molecular cloning of partial digestion products.

    abstract::PI-SceI is a member of an unusual class of rare cutting homing endonucleases produced by an autocatalytic protein splicing from a precursor. To analyze the structural and functional domain organization of the endonuclease PI-SceI and to examine whether the DNA binding activity can be structurally separated from the ca...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi980013d

    authors: Pingoud V,Grindl W,Wende W,Thole H,Pingoud A

    更新日期:1998-06-02 00:00:00

  • Comparative Analysis of CPI-Motif Regulation of Biochemical Functions of Actin Capping Protein.

    abstract::The heterodimeric actin capping protein (CP) is regulated by a set of proteins that contain CP-interacting (CPI) motifs. Outside of the CPI motif, the sequences of these proteins are unrelated and distinct. The CPI motif and surrounding sequences are conserved within a given protein family, when compared to those of o...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.0c00092

    authors: McConnell P,Mekel M,Kozlov AG,Mooren OL,Lohman TM,Cooper JA

    更新日期:2020-03-24 00:00:00

  • Nuclear magnetic resonance studies of carbonic anhydrase catalyzed reversible hydration of acetaldehyde by the saturation transfer method.

    abstract::The catalysis of the chemical exchange between acetaldehyde and its hydrate by bovine carbonic anhydrase B was investigated by the NMR line broadening and saturation transfer techniques. While both chemical exchange and binding to the enzyme had an effect on the line broadening of acetaldehyde and its hydrate, the sat...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00550a021

    authors: Cheshnovsky D,Navon G

    更新日期:1980-04-29 00:00:00

  • Quinolinate phosphoribosyltransferase: kinetic mechanism for a type II PRTase.

    abstract::Quinolinate phosphoribosyltransferase (QAPRTase, EC 2.4.2.19) catalyzes the formation of nicotinate mononucleotide, carbon dioxide, and pyrophosphate from 5-phosphoribosyl 1-pyrophosphate (PRPP) and quinolinic acid (QA, pyridine 2,3-dicarboxylic acid). The enzyme is the only type II PRTase whose X-ray structure is kno...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi012148g

    authors: Cao H,Pietrak BL,Grubmeyer C

    更新日期:2002-03-12 00:00:00

  • Potassium flux through gramicidin ion channels is augmented in vesicles comprised of plasmenylcholine: correlations between gramicidin conformation and function in chemically distinct host bilayer matrices.

    abstract::The functional role of distinct phospholipid subclasses and molecular species in modulating gramicidin-mediated K+ flux was characterized through quantification of changes in the fluorescence intensity of ion specific fluorescent probes encapsulated inside vesicles comprised of individual molecular species of plasmeny...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00022a008

    authors: Chen X,Gross RW

    更新日期:1995-06-06 00:00:00

  • Forming the phosphate layer in reconstituted horse spleen ferritin and the role of phosphate in promoting core surface redox reactions.

    abstract::Apo horse spleen ferritin (apo HoSF) was reconstituted to various core sizes (100-3500 Fe3+/HoSF) by depositing Fe(OH)3 within the hollow HoSF interior by air oxidation of Fe2+. Fe2+ and phosphate (Pi) were then added anaerobically at a 1:4 ratio, and both Fe2+ and Pi were incorporated into the HoSF cores. The resulti...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi982727u

    authors: Johnson JL,Cannon M,Watt RK,Frankel RB,Watt GD

    更新日期:1999-05-18 00:00:00

  • Fine mapping of DNA single-stranded regions using base-specific chemical probes: study of an open complex formed between RNA polymerase and the lac UV5 promoter.

    abstract::We have used diethyl pyrocarbonate (DEP), which carbethoxylates adenine bases, and dimethyl sulfate (DMS), which methylates guanine residues and single-stranded cytosines, to probe bases in open complexes between RNA polymerase and the lac UV5 promoter in vitro. We compared the kinetics of reactivity between bases in ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00436a040

    authors: Buckle M,Buc H

    更新日期:1989-05-16 00:00:00

  • Biochemical and Structural Analysis of FomD That Catalyzes the Hydrolysis of Cytidylyl ( S)-2-Hydroxypropylphosphonate in Fosfomycin Biosynthesis.

    abstract::In fosfomycin biosynthesis, the hydrolysis of cytidylyl ( S)-2-hydroxypropylphosphonate [( S)-HPP-CMP] to afford ( S)-HPP is the only uncharacterized step. Because FomD is an uncharacterized protein with a DUF402 domain that is encoded in the fosfomycin biosynthetic gene cluster, FomD was hypothesized to be responsibl...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.8b00690

    authors: Sato S,Miyanaga A,Kim SY,Kuzuyama T,Kudo F,Eguchi T

    更新日期:2018-08-14 00:00:00

  • Thermodynamics of the dimer-decamer transition of reduced human and plant 2-cys peroxiredoxin.

    abstract::Isothermal titration calorimetry (ITC) is a powerful technique for investigating self-association processes of protein complexes and was expected to reveal quantitative data on peroxiredoxin oligomerization by directly measuring the thermodynamic parameters of dimer-dimer interaction. Recombinant classical 2-cysteine ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi8002956

    authors: Barranco-Medina S,Kakorin S,Lázaro JJ,Dietz KJ

    更新日期:2008-07-08 00:00:00

  • Investigation of the mechanism of iron release from the C-lobe of human serum transferrin: mutational analysis of the role of a pH sensitive triad.

    abstract::The transferrins (TFs) are a family of proteins that are widely distributed in vertebrates, where they serve a major role in iron binding and transport. Most TFs are composed of two homologous lobes, the N- and C-lobes, each able to bind a single iron atom. Human serum transferrin (hTF) binds iron in the blood and del...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi027071q

    authors: Halbrooks PJ,He QY,Briggs SK,Everse SJ,Smith VC,MacGillivray RT,Mason AB

    更新日期:2003-04-08 00:00:00

  • Insertion and orientation of a synthetic peptide representing the C-terminus of the A1 domain of Shiga toxin into phospholipid membranes.

    abstract::Shiga toxin is a bacterial protein composed of one A and five B subunits. Its A chain possesses a protease sensitive loop (Cys-242-Cys-261) that is cleaved to produce an enzymatically active A1 domain and an A2 fragment associated with its B subunit pentamer. The proposed mode of action of the toxin is linked to its r...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi960177z

    authors: Saleh MT,Ferguson J,Boggs JM,Gariépy J

    更新日期:1996-07-23 00:00:00

  • Interfacial properties of the polyheme cytochrome c3 superfamily from Desulfovibrio.

    abstract::In order to compare the interfacial behavior of the polyheme cytochromes c which belong to the cytochrome c3 superfamily, the monomolecular film technique was used to determine whether and how these metalloproteins interact with (phospho)lipids). Measurements of the variations of surface pressure and surface potential...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00036a005

    authors: Florens L,Ivanova M,Dolla A,Czjzek M,Haser R,Verger R,Bruschi M

    更新日期:1995-09-12 00:00:00

  • Comparative structural study of the N-linked oligosaccharides of human normal and pathological immunoglobulin G.

    abstract::The structures of oligosaccharides of normal and pathological immunoglobulin G (IgG) are reported. Asparagine-linked neutral oligosaccharides were released by N-oligosaccharide glycopeptidase (almond) digestion. The reducing ends of the oligosaccharide chains thus obtained were aminated with a fluorescent reagent, 2-a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00378a023

    authors: Takahashi N,Ishii I,Ishihara H,Mori M,Tejima S,Jefferis R,Endo S,Arata Y

    更新日期:1987-02-24 00:00:00

  • Conformational distributions of a four-way DNA junction revealed by time-resolved fluorescence resonance energy transfer.

    abstract::Conformational distributions of a four-way DNA junction have been examined by time-resolved fluorescence resonance energy transfer (FRET). A series of dye-labeled junctions were synthesized with donor (fluorescein) and acceptor (tetramethylrhodamine) dyes conjugated to the 5' termini of the duplex arms in all six pair...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00213a014

    authors: Eis PS,Millar DP

    更新日期:1993-12-21 00:00:00

  • Four-fold channels are involved in iron diffusion into the inner cavity of plant ferritin.

    abstract::From an evolutionary point of view, plant and animal ferritins arose from a common ancestor, but plant ferritin exhibits different features as compared with the animal analogue. One major difference is that the 4-fold channels naturally occurring in plant ferritin are hydrophilic, whereas the 4-fold channels in animal...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi500066m

    authors: Lv C,Zhang S,Zang J,Zhao G,Xu C

    更新日期:2014-04-15 00:00:00

  • Role of the PufX protein in photosynthetic growth of Rhodobacter sphaeroides. 2. PufX is required for efficient ubiquinone/ubiquinol exchange between the reaction center QB site and the cytochrome bc1 complex.

    abstract::The PufX membrane protein is essential for photosynthetic growth of Rhodobacter sphaeroides because it is required for multiple-turnover electron transfer under anaerobic conditions [see accompanying article; Barz, W. P., Francia, F., Venturoli, G., Melandri, B. A., Verméglio, A., & Oesterhelt, D. (1995) Biochemistry ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00046a033

    authors: Barz WP,Verméglio A,Francia F,Venturoli G,Melandri BA,Oesterhelt D

    更新日期:1995-11-21 00:00:00

  • Translesional synthesis past acetylaminofluorene-derived DNA adducts catalyzed by human DNA polymerase kappa and Escherichia coli DNA polymerase IV.

    abstract::Human DNA polymerase kappa (pol kappa) has a sequence significantly homologous with that of Escherichia coli DNA polymerase IV (pol IV). We used a truncated form of human pol kappa (pol kappaDeltaC) and full-length pol IV to explore the miscoding properties of these enzymes. Oligodeoxynucleotides, modified site-specif...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi010702g

    authors: Suzuki N,Ohashi E,Hayashi K,Ohmori H,Grollman AP,Shibutani S

    更新日期:2001-12-18 00:00:00

  • Conformational states of the bacteriophage P22 capsid subunit in relation to self-assembly.

    abstract::The formation of closed icosahedral capsids from a single species of coat protein subunit requires that the subunits assume different conformations at different lattice positions. In the double-stranded DNA bacteriophage P22, formation of correctly dimensioned capsids is mediated by interaction between coat protein su...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00475a030

    authors: Prevelige PE Jr,Thomas D,King J,Towse SA,Thomas GJ Jr

    更新日期:1990-06-12 00:00:00

  • Domain characteristics of the carboxyl-terminal fragment 206-316 of thermolysin: immunochemical studies.

    abstract::The extent of nativeness of the stable conformation of the thermolysin fragment containing the carboxyl-terminal third of the protein (from residues 206 to 316, denoted fragment FII) was examined by its immunogenic and antigenic characteristics. Antisera elicited in rabbits by either intact thermolysin or fragment FII...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00538a007

    authors: Vita C,Fontana A,Chaiken IM

    更新日期:1982-04-27 00:00:00

  • Conformational drift and cryoinactivation of lactate dehydrogenase.

    abstract::Solutions of porcine lactate dehydrogenase of micromolar concentration kept at 4 degrees C for several days lose the greater part of their enzymic activity but recover it when returned to room temperature. The rate of spoiling decreases and the rate of recovery increases with the concentration of the solutions. The de...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00360a024

    authors: King L,Weber G

    更新日期:1986-06-17 00:00:00