Mechanisms underlying robustness and tunability in a plant immune signaling network.

Abstract:

:The plant immune signaling network needs to be robust against attack from fast-evolving pathogens and tunable to optimize immune responses. We investigated the basis of robustness and tunability in the signaling network controlling pattern-triggered immunity (PTI) in Arabidopsis. A dynamic network model containing four major signaling sectors, the jasmonate, ethylene, phytoalexin-deficient 4, and salicylate sectors, which together govern up to 80% of the PTI levels, was built using data for dynamic sector activities and PTI levels under exhaustive combinatorial sector perturbations. Our regularized multiple regression model had a high level of predictive power and captured known and unexpected signal flows in the network. The sole inhibitory sector in the model, the ethylene sector, contributed centrally to network robustness via its inhibition of the jasmonate sector. The model's multiple input sites linked specific signal input patterns varying in strength and timing to different network response patterns, indicating a mechanism enabling tunability.

journal_name

Cell Host Microbe

journal_title

Cell host & microbe

authors

Kim Y,Tsuda K,Igarashi D,Hillmer RA,Sakakibara H,Myers CL,Katagiri F

doi

10.1016/j.chom.2013.12.002

subject

Has Abstract

pub_date

2014-01-15 00:00:00

pages

84-94

issue

1

eissn

1931-3128

issn

1934-6069

pii

S1931-3128(13)00435-6

journal_volume

15

pub_type

杂志文章
  • Drosophila intestinal response to bacterial infection: activation of host defense and stem cell proliferation.

    abstract::Although Drosophila systemic immunity is extensively studied, little is known about the fly's intestine-specific responses to bacterial infection. Global gene expression analysis of Drosophila intestinal tissue to oral infection with the Gram-negative bacterium Erwinia carotovora revealed that immune responses in the ...

    journal_title:Cell host & microbe

    pub_type: 杂志文章

    doi:10.1016/j.chom.2009.01.003

    authors: Buchon N,Broderick NA,Poidevin M,Pradervand S,Lemaitre B

    更新日期:2009-02-19 00:00:00

  • Uncovering common principles in protein export of malaria parasites.

    abstract::For proliferation, the malaria parasite Plasmodium falciparum needs to modify the infected host cell extensively. To achieve this, the parasite exports proteins containing a Plasmodium export element (PEXEL) into the host cell. Phosphatidylinositol-3-phosphate binding and cleavage of the PEXEL are thought to mediate p...

    journal_title:Cell host & microbe

    pub_type: 杂志文章

    doi:10.1016/j.chom.2012.09.010

    authors: Grüring C,Heiber A,Kruse F,Flemming S,Franci G,Colombo SF,Fasana E,Schoeler H,Borgese N,Stunnenberg HG,Przyborski JM,Gilberger TW,Spielmann T

    更新日期:2012-11-15 00:00:00

  • H10N8 and H6N1 maintain avian receptor binding.

    abstract::Influenza viruses of animals can cross species and infect humans. In this issue of Cell Host & Microbe, Zhang et al. (2015) and Tzarum et al. (2015) describe crystal structures and receptor-binding properties of hemagglutinins of avian-origin H10N8 and H6N1 influenza viruses. Human infections with these viruses are no...

    journal_title:Cell host & microbe

    pub_type: 评论,杂志文章

    doi:10.1016/j.chom.2015.02.020

    authors: Richard M,Fouchier RAM

    更新日期:2015-03-11 00:00:00

  • STEVOR is a Plasmodium falciparum erythrocyte binding protein that mediates merozoite invasion and rosetting.

    abstract::Variant surface antigens play an important role in Plasmodium falciparum malaria pathogenesis and in immune evasion by the parasite. Although most work to date has focused on P. falciparum Erythrocyte Membrane Protein 1 (PfEMP1), two other multigene families encoding STEVOR and RIFIN are expressed in invasive merozoit...

    journal_title:Cell host & microbe

    pub_type: 杂志文章

    doi:10.1016/j.chom.2014.06.004

    authors: Niang M,Bei AK,Madnani KG,Pelly S,Dankwa S,Kanjee U,Gunalan K,Amaladoss A,Yeo KP,Bob NS,Malleret B,Duraisingh MT,Preiser PR

    更新日期:2014-07-09 00:00:00

  • Bone morphogenetic protein 4 signaling regulates epithelial renewal in the urinary tract in response to uropathogenic infection.

    abstract::The transitional epithelium of the bladder normally turns over slowly but upon injury undergoes rapid regeneration fueled by basal uroepithelial stem and/or early progenitor cells (USCs). Little is known about the mechanisms underlying the injury response. We investigate the mechanism of bladder epithelial regeneratio...

    journal_title:Cell host & microbe

    pub_type: 杂志文章

    doi:10.1016/j.chom.2009.04.005

    authors: Mysorekar IU,Isaacson-Schmid M,Walker JN,Mills JC,Hultgren SJ

    更新日期:2009-05-08 00:00:00

  • Early-Life Formation of the Microbial and Immunological Environment of the Human Airways.

    abstract::Crosstalk between immune cells and the microbiota in mucosal tissues can set an individual on a trajectory toward health or disease. Little is known about these early-life events in the human respiratory tract. We examined bacterial colonization and immune system maturation in the lower airways over the first year of ...

    journal_title:Cell host & microbe

    pub_type: 杂志文章

    doi:10.1016/j.chom.2018.10.019

    authors: Pattaroni C,Watzenboeck ML,Schneidegger S,Kieser S,Wong NC,Bernasconi E,Pernot J,Mercier L,Knapp S,Nicod LP,Marsland CP,Roth-Kleiner M,Marsland BJ

    更新日期:2018-12-12 00:00:00

  • The cancer microbiome atlas: a pan-cancer comparative analysis to distinguish tissue-resident microbiota from contaminants.

    abstract::Studying the microbial composition of internal organs and their associations with disease remains challenging due to the difficulty of acquiring clinical biopsies. We designed a statistical model to analyze the prevalence of species across sample types from The Cancer Genome Atlas (TCGA), revealing that species equipr...

    journal_title:Cell host & microbe

    pub_type: 杂志文章

    doi:10.1016/j.chom.2020.12.001

    authors: Dohlman AB,Arguijo Mendoza D,Ding S,Gao M,Dressman H,Iliev ID,Lipkin SM,Shen X

    更新日期:2020-12-21 00:00:00

  • Neutrophils Cause an Intravascular Traffic Jam.

    abstract::Neutrophil swarming is defined by large numbers of cells simultaneously and rapidly migrating to a site of injury or infection. In this issue of Cell Host & Microbe, Lee et al. (2018) demonstrate that intravascular swarming of neutrophils occurs in response to Candida albicans infection and causes vascular occlusion a...

    journal_title:Cell host & microbe

    pub_type: 评论,杂志文章

    doi:10.1016/j.chom.2017.12.011

    authors: Minns MS,Pearlman E

    更新日期:2018-01-10 00:00:00

  • A Large Polysaccharide Produced by Helicobacter hepaticus Induces an Anti-inflammatory Gene Signature in Macrophages.

    abstract::Interactions between the host and its microbiota are of mutual benefit and promote health. Complex molecular pathways underlie this dialog, but the identity of microbe-derived molecules that mediate the mutualistic state remains elusive. Helicobacter hepaticus is a member of the mouse intestinal microbiota that is tol...

    journal_title:Cell host & microbe

    pub_type: 杂志文章

    doi:10.1016/j.chom.2017.11.002

    authors: Danne C,Ryzhakov G,Martínez-López M,Ilott NE,Franchini F,Cuskin F,Lowe EC,Bullers SJ,Arthur JSC,Powrie F

    更新日期:2017-12-13 00:00:00

  • Co-option of Membrane Wounding Enables Virus Penetration into Cells.

    abstract::During cell entry, non-enveloped viruses undergo partial uncoating to expose membrane lytic proteins for gaining access to the cytoplasm. We report that adenovirus uses membrane piercing to induce and hijack cellular wound removal processes that facilitate further membrane disruption and infection. Incoming adenovirus...

    journal_title:Cell host & microbe

    pub_type: 杂志文章

    doi:10.1016/j.chom.2015.06.006

    authors: Luisoni S,Suomalainen M,Boucke K,Tanner LB,Wenk MR,Guan XL,Grzybek M,Coskun Ü,Greber UF

    更新日期:2015-07-08 00:00:00

  • The Trypanosoma cruzi flagellum is discarded via asymmetric cell division following invasion and provides early targets for protective CD8⁺ T cells.

    abstract::During invasion of host cells by Trypanosoma cruzi, the parasite that causes Chagas disease, the elongated, flagellated trypomastigotes remodel into oval amastigotes with no external flagellum. The underlying mechanism of this remodeling and the fate of the flagellum are obscure. We discovered that T. cruzi trypomasti...

    journal_title:Cell host & microbe

    pub_type: 杂志文章

    doi:10.1016/j.chom.2014.09.003

    authors: Kurup SP,Tarleton RL

    更新日期:2014-10-08 00:00:00

  • Polyclonal and specific antibodies mediate protective immunity against enteric helminth infection.

    abstract::Anti-helminth immunity involves CD4+ T cells, yet the precise effector mechanisms responsible for parasite killing or expulsion remain elusive. We now report an essential role for antibodies in mediating immunity against the enteric helminth Heligmosomoides polygyrus (Hp), a natural murine parasite that establishes ch...

    journal_title:Cell host & microbe

    pub_type: 杂志文章

    doi:10.1016/j.chom.2008.08.014

    authors: McCoy KD,Stoel M,Stettler R,Merky P,Fink K,Senn BM,Schaer C,Massacand J,Odermatt B,Oettgen HC,Zinkernagel RM,Bos NA,Hengartner H,Macpherson AJ,Harris NL

    更新日期:2008-10-16 00:00:00

  • The Innate Sense of Bacteriophages.

    abstract::Perturbation of the gut microbiota is associated with inflammatory bowel disease, obesity, and even cancer. In this issue of Cell Host & Microbe, Gogokhia et al. 2019 sought to kill cancer-causing bacteria with bacteriophages. However, the bacteriophages themselves directly stimulated an immune response, which worsene...

    journal_title:Cell host & microbe

    pub_type: 评论,杂志文章

    doi:10.1016/j.chom.2019.01.020

    authors: Bollyky PL,Secor PR

    更新日期:2019-02-13 00:00:00

  • Hedgehog: linking uracil to innate defense.

    abstract::The ability of the gut epithelium to defend against pathogens while tolerating harmless commensal organisms remains an important puzzle. In this issue of Cell Host & Microbe, Lee et al. (2015) reveal how pathogen-secreted uracil acts at two steps to induce ROS via the Hedgehog pathway. ...

    journal_title:Cell host & microbe

    pub_type: 评论,杂志文章

    doi:10.1016/j.chom.2015.01.010

    authors: Bier E,Nizet V

    更新日期:2015-02-11 00:00:00

  • Increased expression of LDL receptor-related protein 1 during human cytomegalovirus infection reduces virion cholesterol and infectivity.

    abstract::In response to virus infection, cells can alter protein expression to modify cellular functions and limit viral replication. To examine host protein expression during infection with human cytomegalovirus (HCMV), an enveloped DNA virus, we performed a semiquantitative, temporal analysis of the cell surface proteome in ...

    journal_title:Cell host & microbe

    pub_type: 杂志文章

    doi:10.1016/j.chom.2012.05.012

    authors: Gudleski-O'Regan N,Greco TM,Cristea IM,Shenk T

    更新日期:2012-07-19 00:00:00

  • Cholesterol Metabolism by Uncultured Human Gut Bacteria Influences Host Cholesterol Level.

    abstract::The human microbiome encodes extensive metabolic capabilities, but our understanding of the mechanisms linking gut microbes to human metabolism remains limited. Here, we focus on the conversion of cholesterol to the poorly absorbed sterol coprostanol by the gut microbiota to develop a framework for the identification ...

    journal_title:Cell host & microbe

    pub_type: 杂志文章

    doi:10.1016/j.chom.2020.05.013

    authors: Kenny DJ,Plichta DR,Shungin D,Koppel N,Hall AB,Fu B,Vasan RS,Shaw SY,Vlamakis H,Balskus EP,Xavier RJ

    更新日期:2020-08-12 00:00:00

  • Infection-Induced Peroxisome Biogenesis Is a Metabolic Strategy for Herpesvirus Replication.

    abstract::Viral proteins have evolved to target cellular organelles and usurp their functions for virus replication. Despite the knowledge of these critical functions for several organelles, little is known about peroxisomes during infection. Peroxisomes are primarily metabolic organelles with important functions in lipid metab...

    journal_title:Cell host & microbe

    pub_type: 杂志文章

    doi:10.1016/j.chom.2018.09.002

    authors: Jean Beltran PM,Cook KC,Hashimoto Y,Galitzine C,Murray LA,Vitek O,Cristea IM

    更新日期:2018-10-10 00:00:00

  • F11L-mediated inhibition of RhoA-mDia signaling stimulates microtubule dynamics during vaccinia virus infection.

    abstract::Microtubules play an important role in the transport of viral pathogens during the establishment of their infection cycles. The microtubule cytoskeleton also facilitates efficient release of newly assembled progeny at later stages of infection. However, the precise effects of viral infection on microtubule dynamics ar...

    journal_title:Cell host & microbe

    pub_type: 杂志文章

    doi:10.1016/j.chom.2007.04.007

    authors: Arakawa Y,Cordeiro JV,Way M

    更新日期:2007-05-17 00:00:00

  • Both Neutralizing and Non-Neutralizing Human H7N9 Influenza Vaccine-Induced Monoclonal Antibodies Confer Protection.

    abstract::Pathogenic H7N9 avian influenza viruses continue to represent a public health concern, and several candidate vaccines are currently being developed. It is vital to assess if protective antibodies are induced following vaccination and to characterize the diversity of epitopes targeted. Here we characterized the binding...

    journal_title:Cell host & microbe

    pub_type: 杂志文章

    doi:10.1016/j.chom.2016.05.014

    authors: Henry Dunand CJ,Leon PE,Huang M,Choi A,Chromikova V,Ho IY,Tan GS,Cruz J,Hirsh A,Zheng NY,Mullarkey CE,Ennis FA,Terajima M,Treanor JJ,Topham DJ,Subbarao K,Palese P,Krammer F,Wilson PC

    更新日期:2016-06-08 00:00:00

  • Microbes and Diet-Induced Obesity: Fast, Cheap, and Out of Control.

    abstract::Here I revisit our early experiments published in Cell Host & Microbe (Turnbaugh et al., 2008) showing that a diet rich in fat and simple sugars alters the gut microbiome in a manner that contributes to host adiposity, and reflect upon the remarkable advances and remaining challenges in this field. ...

    journal_title:Cell host & microbe

    pub_type: 杂志文章

    doi:10.1016/j.chom.2017.02.021

    authors: Turnbaugh PJ

    更新日期:2017-03-08 00:00:00

  • Host restriction factor SAMHD1 limits human T cell leukemia virus type 1 infection of monocytes via STING-mediated apoptosis.

    abstract::Human T cell leukemia virus type 1 (HTLV-1) is the causative agent of adult T cell leukemia and HTLV-1-associated myelopathies. In addition to T cells, HTLV-1 infects cells of the myeloid lineage, which play critical roles in the host innate response to viral infection. Investigating the monocyte depletion observed du...

    journal_title:Cell host & microbe

    pub_type: 杂志文章

    doi:10.1016/j.chom.2013.09.009

    authors: Sze A,Belgnaoui SM,Olagnier D,Lin R,Hiscott J,van Grevenynghe J

    更新日期:2013-10-16 00:00:00

  • The relationship of the oral microbiotia to periodontal health and disease.

    abstract::The oral microbial community represents the best-characterized consortium associated with the human host. There are strong correlations between the qualitative composition of the oral microbiota and clinically healthy or diseased states. However, additional studies are needed to elucidate the mechanisms that define th...

    journal_title:Cell host & microbe

    pub_type: 杂志文章,评审

    doi:10.1016/j.chom.2011.09.008

    authors: Curtis MA,Zenobia C,Darveau RP

    更新日期:2011-10-20 00:00:00

  • Autophagy: Suicide Prevention Hotline for the Gut Epithelium.

    abstract::Autophagy is genetically associated with inflammatory bowel disease (IBD); however, its role remains unclear in disease pathogenesis. Three recent studies reveal a novel cytoprotective role of autophagy during viral, bacterial, and protozoan-triggered IBD (Burger et al., 2018; Matsuzawa-Ishimoto et al., 2017; Pott et ...

    journal_title:Cell host & microbe

    pub_type: 评论,杂志文章

    doi:10.1016/j.chom.2018.01.015

    authors: Grizotte-Lake M,Vaishnava S

    更新日期:2018-02-14 00:00:00

  • HIV Latency: Stochastic across Multiple Scales.

    abstract::Proviral latency is a major barrier to a cure for HIV. In this issue of Cell Host & Microbe, Hataye et al. (2019) show that reactivation of HIV latency is a non-deterministic, highly stochastic (i.e., noisy) process and propose that stochastic transitions to exponential viral expansion require a critical threshold of ...

    journal_title:Cell host & microbe

    pub_type: 评论,杂志文章

    doi:10.1016/j.chom.2019.11.010

    authors: Hansen MMK,Martin B,Weinberger LS

    更新日期:2019-12-11 00:00:00

  • A Bacterial Pathogen Targets a Host Rab-Family GTPase Defense Pathway with a GAP.

    abstract::Cell-autonomous defense mechanisms are potent strategies that protect individual cells against intracellular pathogens. The Rab-family GTPase Rab32 was previously shown to restrict the intracellular human pathogen Salmonella Typhi, but its potential broader role in antimicrobial defense remains unknown. We show that R...

    journal_title:Cell host & microbe

    pub_type: 杂志文章

    doi:10.1016/j.chom.2016.01.004

    authors: Spanò S,Gao X,Hannemann S,Lara-Tejero M,Galán JE

    更新日期:2016-02-10 00:00:00

  • Adaptive Strategies of the Candidate Probiotic E. coli Nissle in the Mammalian Gut.

    abstract::Probiotics are living microorganisms that are increasingly used as gastrointestinal therapeutics by virtue of their innate or engineered genetic function. Unlike abiotic therapeutics, probiotics can replicate in their intended site, subjecting their genomes and therapeutic properties to natural selection. We exposed t...

    journal_title:Cell host & microbe

    pub_type: 杂志文章

    doi:10.1016/j.chom.2019.02.005

    authors: Crook N,Ferreiro A,Gasparrini AJ,Pesesky MW,Gibson MK,Wang B,Sun X,Condiotte Z,Dobrowolski S,Peterson D,Dantas G

    更新日期:2019-04-10 00:00:00

  • Activation of plant nod-like receptors: how indirect can it be?

    abstract::Pioneering plant research has shown that many Nod-like receptors (NLRs) detect pathogens indirectly via recognizing modifications of other host proteins. In this issue, two groups show that the RPM1 NLR is activated by phosphorylation of the host protein RIN4, probably resulting from activation of a host kinase by pat...

    journal_title:Cell host & microbe

    pub_type: 评论,杂志文章

    doi:10.1016/j.chom.2011.02.002

    authors: Innes RW

    更新日期:2011-02-17 00:00:00

  • Gut Bacteria-Not for the Faint of Heart.

    abstract::The role of gut bacteria in complications of heart inflammation has previously not been fully understood. Gil-Cruz et al. (2019) demonstrate a commensal Bacteroides species that triggers a cross-immune response against a bacterial protein and heart epitope, causing cardiomyopathy. This study links commensal bacteria w...

    journal_title:Cell host & microbe

    pub_type: 评论,杂志文章

    doi:10.1016/j.chom.2019.12.011

    authors: Mandelbaum N,Gefen T,Geva-Zatorsky N

    更新日期:2020-01-08 00:00:00

  • Shigella phagocytic vacuolar membrane remnants participate in the cellular response to pathogen invasion and are regulated by autophagy.

    abstract::Intracellular pathogens like Shigella flexneri enter host cells by phagocytosis. Once inside, the pathogen breaks the vacuolar membrane for cytosolic access. The fate and function of the vacuolar membrane remnants are not clear. Examining Shigella-infected nonmyeloid cells, we observed that proteins associated with va...

    journal_title:Cell host & microbe

    pub_type: 杂志文章

    doi:10.1016/j.chom.2009.07.005

    authors: Dupont N,Lacas-Gervais S,Bertout J,Paz I,Freche B,Van Nhieu GT,van der Goot FG,Sansonetti PJ,Lafont F

    更新日期:2009-08-20 00:00:00

  • Inducible Germline IgMs Bridge Trypanosome Lytic Factor Assembly and Parasite Recognition.

    abstract::Trypanosomiasis is a devastating neglected tropical disease affecting livestock and humans. Humans are susceptible to two Trypanosoma brucei subspecies but protected from other trypanosomes by circulating high-density lipoprotein (HDL) complexes called trypanosome lytic factors (TLFs) 1 and 2. TLFs contain apolipoprot...

    journal_title:Cell host & microbe

    pub_type: 杂志文章

    doi:10.1016/j.chom.2020.04.012

    authors: Verdi J,Zipkin R,Hillman E,Gertsch RA,Pangburn SJ,Thomson R,Papavasiliou N,Sternberg J,Raper J

    更新日期:2020-07-08 00:00:00