Data-driven modeling of synaptic transmission and integration.

Abstract:

:In this chapter, we describe how to create mathematical models of synaptic transmission and integration. We start with a brief synopsis of the experimental evidence underlying our current understanding of synaptic transmission. We then describe synaptic transmission at a particular glutamatergic synapse in the mammalian cerebellum, the mossy fiber to granule cell synapse, since data from this well-characterized synapse can provide a benchmark comparison for how well synaptic properties are captured by different mathematical models. This chapter is structured by first presenting the simplest mathematical description of an average synaptic conductance waveform and then introducing methods for incorporating more complex synaptic properties such as nonlinear voltage dependence of ionotropic receptors, short-term plasticity, and stochastic fluctuations. We restrict our focus to excitatory synaptic transmission, but most of the modeling approaches discussed here can be equally applied to inhibitory synapses. Our data-driven approach will be of interest to those wishing to model synaptic transmission and network behavior in health and disease.

authors

Rothman JS,Silver RA

doi

10.1016/B978-0-12-397897-4.00004-8

subject

Has Abstract

pub_date

2014-01-01 00:00:00

pages

305-50

eissn

1877-1173

issn

1878-0814

pii

B978-0-12-397897-4.00004-8

journal_volume

123

pub_type

杂志文章,评审
  • Matrix Metalloproteinases in Normal Pregnancy and Preeclampsia.

    abstract::Normal pregnancy is associated with marked hemodynamic and uterine changes that allow adequate uteroplacental blood flow and uterine expansion for the growing fetus. These pregnancy-associated changes involve significant uteroplacental and vascular remodeling. Matrix metalloproteinases (MMPs) are important regulators ...

    journal_title:Progress in molecular biology and translational science

    pub_type: 杂志文章,评审

    doi:10.1016/bs.pmbts.2017.04.001

    authors: Chen J,Khalil RA

    更新日期:2017-01-01 00:00:00

  • From Genome-Wide Association Study to Phenome-Wide Association Study: New Paradigms in Obesity Research.

    abstract::Obesity is a condition in which excess body fat has accumulated over an extent that increases the risk of many chronic diseases. The current clinical classification of obesity is based on measurement of body mass index (BMI), waist-hip ratio, and body fat percentage. However, these measurements do not account for the ...

    journal_title:Progress in molecular biology and translational science

    pub_type: 杂志文章,评审

    doi:10.1016/bs.pmbts.2016.02.003

    authors: Zhang YP,Zhang YY,Duan DD

    更新日期:2016-01-01 00:00:00

  • Gene Targeted Transgenic Mouse Models in Prion Research.

    abstract::The production of transgenic mice expressing different forms of the prion protein (PrP) or devoid of PrP has enabled researchers to study the role of PrP in the infectious process of a prion disease and its normal function in the healthy individual. A wide range of transgenic models have been produced ranging from PrP...

    journal_title:Progress in molecular biology and translational science

    pub_type: 杂志文章,评审

    doi:10.1016/bs.pmbts.2017.06.008

    authors: Diack AB,Alibhai JD,Manson JC

    更新日期:2017-01-01 00:00:00

  • Hair Follicle-Associated Pluripotent(HAP) Stem Cells.

    abstract::The hair follicle has been known, since 1990, to contain stem cells located in the bulge area. In 2003, we reported a new type of stem cell in the hair follicle that expresses the brain stem-cell marker nestin. We have termed these cells as hair-follicle-associated pluripotent (HAP) stem cells. HAP stem cells can diff...

    journal_title:Progress in molecular biology and translational science

    pub_type: 杂志文章,评审

    doi:10.1016/bs.pmbts.2018.09.001

    authors: Hoffman RM,Amoh Y

    更新日期:2018-01-01 00:00:00

  • Group I Intron-Based Therapeutics Through Trans-Splicing Reaction.

    abstract::In 1982, the Cech group discovered that an intron structure in an rRNA precursor of Tetrahymena thermophila is sufficient to complete splicing without assistance from proteins. This was the first moment that scientists recognized RNAs can have catalytic activities derived from their own unique three-dimensional struct...

    journal_title:Progress in molecular biology and translational science

    pub_type: 杂志文章,评审

    doi:10.1016/bs.pmbts.2018.07.001

    authors: Lee CH,Han SR,Lee SW

    更新日期:2018-01-01 00:00:00

  • Regulatory T Cells in Autoimmune Diabetes: Mechanisms of Action and Translational Potential.

    abstract::Since the discovery of specialized T cells with regulatory function, harnessing the power of these cells to ameliorate autoimmunity has been a major goal. Here we collate the evidence that regulatory T cells (Treg) can inhibit Type 1 diabetes in animal models and humans. We discuss the anatomical sites and molecular m...

    journal_title:Progress in molecular biology and translational science

    pub_type: 杂志文章,评审

    doi:10.1016/bs.pmbts.2015.08.004

    authors: Ovcinnikovs V,Walker LS

    更新日期:2015-01-01 00:00:00

  • Glycated serum proteins: High in pancreatic cancer and low in preeclampsia.

    abstract::Glycated serum protein (GSP, measured as serum fructosamine concentration in μmol/L) is a product of glycation reaction between glucose and serum proteins in the blood circulation. GSP is used along with blood glucose, glycated hemoglobin (HbA1c), and glycated albumin as indicators of glycemic control for diabetic pat...

    journal_title:Progress in molecular biology and translational science

    pub_type: 杂志文章

    doi:10.1016/bs.pmbts.2019.01.007

    authors: Wang X,Zhang R,Zhang L,Tian Z

    更新日期:2019-01-01 00:00:00

  • Mouse Models of Gonadotrope Development.

    abstract::The pituitary gonadotrope is central to reproductive function. Gonadotropes develop in a systematic process dependent on signaling factors secreted from surrounding tissues and those produced within the pituitary gland itself. These signaling pathways are important for stimulating specific transcription factors that u...

    journal_title:Progress in molecular biology and translational science

    pub_type: 杂志文章,评审

    doi:10.1016/bs.pmbts.2016.08.001

    authors: Stallings CE,Kapali J,Ellsworth BS

    更新日期:2016-01-01 00:00:00

  • Neuroepigenetics of Aging and Age-Related Neurodegenerative Disorders.

    abstract::Neurodegenerative diseases are complex, progressive disorders and affect millions of people worldwide, contributing significantly to the global burden of disease. In recent years, research has begun to investigate epigenetic mechanisms for a potential role in disease etiology. In this chapter, we describe the current ...

    journal_title:Progress in molecular biology and translational science

    pub_type: 杂志文章,评审

    doi:10.1016/bs.pmbts.2018.04.008

    authors: Lardenoije R,Pishva E,Lunnon K,van den Hove DL

    更新日期:2018-01-01 00:00:00

  • Fluorescence technologies for monitoring interactions between biological molecules in vitro.

    abstract::Over the last two centuries, the discovery and understanding of the principle of fluorescence have provided new means of characterizing physical/biological/chemical processes in a noninvasive manner. Fluorescence spectroscopy has become one of the most powerful and widely applied methods in the life sciences, from fun...

    journal_title:Progress in molecular biology and translational science

    pub_type: 杂志文章,评审

    doi:10.1016/B978-0-12-386932-6.00004-1

    authors: Deshayes S,Divita G

    更新日期:2013-01-01 00:00:00

  • Coordinating Rho and Rac: the regulation of Rho GTPase signaling and cadherin junctions.

    abstract::Cadherin-based cell-cell adhesions are dynamic structures that mediate tissue organization and morphogenesis. They link cells together, mediate cell-cell recognition, and influence cell shape, motility, proliferation, and differentiation. At the cellular level, operation of classical cadherin adhesion systems is coord...

    journal_title:Progress in molecular biology and translational science

    pub_type: 杂志文章,评审

    doi:10.1016/B978-0-12-394311-8.00003-0

    authors: Ratheesh A,Priya R,Yap AS

    更新日期:2013-01-01 00:00:00

  • Dendritic spine dysgenesis in neuropathic pain.

    abstract::The failure of neuropathic pain to abate even years after trauma suggests that adverse changes to synaptic function must exist in a chronic pathological state in nociceptive pathways. The chronicity of neuropathic pain therefore underscores the importance of understanding the contribution of dendritic spines--micron-s...

    journal_title:Progress in molecular biology and translational science

    pub_type: 杂志文章,评审

    doi:10.1016/bs.pmbts.2014.12.001

    authors: Tan AM

    更新日期:2015-01-01 00:00:00

  • Occupational chemicals: metabolism, toxicity, and mode of action.

    abstract::Workers experience large interindividual variability in exposure and biological response following exposure to chemicals. Quantitative methods to investigate occupational exposures and their relationship with biomarker levels, toxicokinetics of chemicals, and gene-environment interactions in disease development can be...

    journal_title:Progress in molecular biology and translational science

    pub_type: 杂志文章,评审

    doi:10.1016/B978-0-12-415813-9.00006-4

    authors: Flack S,Nylander-French LA

    更新日期:2012-01-01 00:00:00

  • The role of bombesin and bombesin-related peptides in the short-term control of food intake.

    abstract::Bombesin (Bn) is a 14-amino acid peptide isolated from the skin of the frog Bombina bombina. The mammalian homologs of this peptide include three forms of gastrin-releasing peptide (GRP): GRP-10, GRP-27, and GRP-29, and a 10-amino acid peptide referred to as neuromedin-B (NMB). These peptides evoke a number of respons...

    journal_title:Progress in molecular biology and translational science

    pub_type: 杂志文章,评审

    doi:10.1016/B978-0-12-386933-3.00010-8

    authors: Sayegh AI

    更新日期:2013-01-01 00:00:00

  • AD molecular: Imaging tau aggregates with positron emissions tomography.

    abstract::Pathologic aggregates of tau protein are observed in several neurodegenerative diseases and are used to diagnose and stage disease postmortem. Recent advances in positron emission tomography radioligands allow for the detection of aggregated tau proteins in living persons. This chapter describes the development and ch...

    journal_title:Progress in molecular biology and translational science

    pub_type: 杂志文章,评审

    doi:10.1016/bs.pmbts.2019.07.007

    authors: Betthauser TJ

    更新日期:2019-01-01 00:00:00

  • Free fatty acids and skeletal muscle insulin resistance.

    abstract::Insulin resistance plays a key role in the development of type 2 diabetes mellitus and is also associated with several other diseases, such as obesity, hypertension, and cardiovascular diseases. Type 2 diabetes and obesity have become epidemic worldwide in the past few decades, and epidemiological and metabolic eviden...

    journal_title:Progress in molecular biology and translational science

    pub_type: 杂志文章,评审

    doi:10.1016/B978-0-12-800101-1.00008-9

    authors: Rachek LI

    更新日期:2014-01-01 00:00:00

  • Viral capsids as self-assembling templates for new materials.

    abstract::The self-assembling protein shells of viruses have provided convenient scaffolds for the construction of many new materials with well-defined nanoscale architectures. In some cases, the native amino acid functional groups have served as nucleation sites for the deposition of metals and semiconductors, leading to organ...

    journal_title:Progress in molecular biology and translational science

    pub_type: 杂志文章,评审

    doi:10.1016/B978-0-12-415906-8.00002-9

    authors: Dedeo MT,Finley DT,Francis MB

    更新日期:2011-01-01 00:00:00

  • Exercise and Regulation of Lipid Metabolism.

    abstract::The increased prevalence of hyperlipidemia, hypertriglyceridemia, hypercholesterolemia, and fatty liver disease has provided increasingly negative connotations toward lipids. However, it is important to remember that lipids are essential components supporting life. Lipids are a class of molecules defined by their inhe...

    journal_title:Progress in molecular biology and translational science

    pub_type: 杂志文章,评审

    doi:10.1016/bs.pmbts.2015.06.017

    authors: Noland RC

    更新日期:2015-01-01 00:00:00

  • Molecular Mechanisms of Cannabis Signaling in the Brain.

    abstract::Cannabis has been cultivated and used by humans for thousands of years. Research for decades was focused on understanding the mechanisms of an illegal/addictive drug. This led to the discovery of the vast endocannabinoid system. Research has now shifted to understanding fundamental biological questions related to one ...

    journal_title:Progress in molecular biology and translational science

    pub_type: 杂志文章,评审

    doi:10.1016/bs.pmbts.2015.10.002

    authors: Ronan PJ,Wongngamnit N,Beresford TP

    更新日期:2016-01-01 00:00:00

  • Structural determinants of arrestin functions.

    abstract::Arrestins are a small protein family with only four members in mammals. Arrestins demonstrate an amazing versatility, interacting with hundreds of different G protein-coupled receptor (GPCR) subtypes, numerous nonreceptor signaling proteins, and components of the internalization machinery, as well as cytoskeletal elem...

    journal_title:Progress in molecular biology and translational science

    pub_type: 杂志文章,评审

    doi:10.1016/B978-0-12-394440-5.00003-6

    authors: Gurevich VV,Gurevich EV

    更新日期:2013-01-01 00:00:00

  • Serum AFP levels in patients suffering from 47 different types of cancers and noncancer diseases.

    abstract::Alpha-fetoprotein (AFP) is a glycoprotein and belongs to the gene family of serum albumins. The serum AFP levels were found to be elevated in the sera of liver cancer patients in 1964 and were subsequently developed and used as a liver cancer biomarker. However, elevated serum AFP levels have been observed in patients...

    journal_title:Progress in molecular biology and translational science

    pub_type: 杂志文章

    doi:10.1016/bs.pmbts.2019.01.001

    authors: He Y,Lu H,Zhang L

    更新日期:2019-01-01 00:00:00

  • Ribosomal protein S6 kinase from TOP mRNAs to cell size.

    abstract::Ribosomal protein S6 kinase (S6K) has been implicated in the phosphorylation of multiple substrates and is subject to activation by a wide variety of signals that converge at mammalian target of rapamycin (mTOR). In the course of the search for its physiological role, it was proposed that S6K activation and ribosomal ...

    journal_title:Progress in molecular biology and translational science

    pub_type: 杂志文章,评审

    doi:10.1016/S1877-1173(09)90003-5

    authors: Meyuhas O,Dreazen A

    更新日期:2009-01-01 00:00:00

  • Therapeutic targets in Alzheimer's disease and related tauopathies.

    abstract::Alzheimer's disease is a progressive neurodegenerative disease that is characterized histopathologically by the presence of plaques, mainly composed of Abeta amyloid and the tangles, mainly composed of hyperphosphorylated tau. To date, there is no treatment that can reverse the disease, and all the current therapeutic...

    journal_title:Progress in molecular biology and translational science

    pub_type: 杂志文章,评审

    doi:10.1016/B978-0-12-385506-0.00002-8

    authors: Corbo CP,Alonso Adel C

    更新日期:2011-01-01 00:00:00

  • Animal models of muscular dystrophy.

    abstract::The muscular dystrophies (MDs) represent a diverse collection of inherited human disorders, which affect to varying degrees skeletal, cardiac, and sometimes smooth muscle (Emery, 2002). To date, more than 50 different genes have been implicated as causing one or more types of MD (Bansal et al., 2003). In many cases, i...

    journal_title:Progress in molecular biology and translational science

    pub_type: 杂志文章,评审

    doi:10.1016/B978-0-12-394596-9.00004-4

    authors: Ng R,Banks GB,Hall JK,Muir LA,Ramos JN,Wicki J,Odom GL,Konieczny P,Seto J,Chamberlain JR,Chamberlain JS

    更新日期:2012-01-01 00:00:00

  • Use of Zinc-Finger Nucleases for Crop Improvement.

    abstract::Over the past two decades, new technologies enabling targeted modification of plant genomes have been developed. Among these are zinc-finger nucleases (ZFNs) which are composed of engineered zinc-finger DNA-binding domains fused with a nuclease, generally the FokI nuclease. The zinc-finger domains are composed of a se...

    journal_title:Progress in molecular biology and translational science

    pub_type: 杂志文章,评审

    doi:10.1016/bs.pmbts.2017.03.006

    authors: Davies JP,Kumar S,Sastry-Dent L

    更新日期:2017-01-01 00:00:00

  • Central Neuroepigenetic Regulation of the Hypothalamic-Pituitary-Adrenal Axis.

    abstract::Dynamic adaptation to stressful life events requires the co-ordinated action of the central stress response, which is mediated by the hypothalamic-pituitary-adrenal (HPA) axis, to restore and maintain homeostasis. Excessive exposure to stress or traumatic life events, such as childhood maltreatment, has been linked to...

    journal_title:Progress in molecular biology and translational science

    pub_type: 杂志文章,评审

    doi:10.1016/bs.pmbts.2018.04.006

    authors: Dick A,Provencal N

    更新日期:2018-01-01 00:00:00

  • The hammerhead ribozyme: structure, catalysis, and gene regulation.

    abstract::The hammerhead ribozyme has long been considered a prototype for understanding RNA catalysis, but discrepancies between the earlier crystal structures of a minimal hammerhead self-cleaving motif and various biochemical investigations frustrated attempt to understand hammerhead ribozyme catalysis in terms of structure....

    journal_title:Progress in molecular biology and translational science

    pub_type: 杂志文章,评审

    doi:10.1016/B978-0-12-381286-5.00001-9

    authors: Scott WG,Horan LH,Martick M

    更新日期:2013-01-01 00:00:00

  • Current and Emerging Targeting Strategies for Treatment of Pancreatic Cancer.

    abstract::With a dismal 5-year survival rate of only 8%, pancreatic cancer still remains a very lethal disease. As with most cancers, pancreatic cancer is treated with different combinations of chemotherapeutic drugs which result in side effects and potential drug resistance leading in many cases to the unfortunate demise of th...

    journal_title:Progress in molecular biology and translational science

    pub_type: 杂志文章,评审

    doi:10.1016/bs.pmbts.2016.09.006

    authors: Baines AT,Martin PM,Rorie CJ

    更新日期:2016-01-01 00:00:00

  • Wnt signaling and cardiac differentiation.

    abstract::The Wnt family of secreted glycoproteins participates in a wide array of biological processes, including cellular differentiation, proliferation, survival, apoptosis, adhesion, angiogenesis, hypertrophy, and aging. The canonical Wnt signaling primarily utilizes β-catenin-mediated activation of transcription, while the...

    journal_title:Progress in molecular biology and translational science

    pub_type: 杂志文章,评审

    doi:10.1016/B978-0-12-398459-3.00007-1

    authors: Flaherty MP,Kamerzell TJ,Dawn B

    更新日期:2012-01-01 00:00:00

  • From stem cells to cardiomyocytes: the role of forces in cardiac maturation, aging, and disease.

    abstract::Stem cell differentiation into a variety of lineages is known to involve signaling from the extracellular niche, including from the physical properties of that environment. What regulates stem cell responses to these cues is there ability to activate different mechanotransductive pathways. Here, we will review the str...

    journal_title:Progress in molecular biology and translational science

    pub_type: 杂志文章,评审

    doi:10.1016/B978-0-12-394624-9.00009-9

    authors: Kaushik G,Engler AJ

    更新日期:2014-01-01 00:00:00