Unexpected patterns of Epstein-Barr virus transcription revealed by a high throughput PCR array for absolute quantification of viral mRNA.

Abstract:

:We have validated a flexible, high-throughput and relatively inexpensive RT-QPCR array platform for absolute quantification of Epstein-Barr virus transcripts in different latent and lytic infection states. Several novel observations are reported. First, during infection of normal B cells, Wp-initiated latent gene transcripts remain far more abundant following activation of the Cp promoter than was hitherto suspected. Second, EBNA1 transcript levels are remarkably low in all forms of latency, typically ranging from 1 to 10 transcripts per cell. EBNA3A, -3B and -3C transcripts are likewise very low in Latency III, typically at levels similar to or less than EBNA1 transcripts. Thirdly, a subset of lytic gene transcripts is detectable in Burkitt lymphoma lines at low levels, including: BILF1, which has oncogenic properties, and the poorly characterized LF1, LF2 and LF3 genes. Analysis of seven African BL biopsies confirmed this transcription profile but additionally revealed significant expression of LMP2 transcripts.

journal_name

Virology

journal_title

Virology

authors

Tierney RJ,Shannon-Lowe CD,Fitzsimmons L,Bell AI,Rowe M

doi

10.1016/j.virol.2014.10.030

subject

Has Abstract

pub_date

2015-01-01 00:00:00

pages

117-30

eissn

0042-6822

issn

1096-0341

pii

S0042-6822(14)00487-5

journal_volume

474

pub_type

杂志文章

相关文献

VIROLOGY文献大全
  • Biosynthesis of reovirus-specified polypeptides. 2-aminopurine increases the efficiency of translation of reovirus s1 mRNA but not s4 mRNA in transfected cells.

    abstract::The effect of 2-aminopurine (2AP), an inhibitor of the RNA-dependent P1/eIF-2 protein kinase, on the expression of the reovirus serotype 1 Lang strain S1 and S4 genes in transfected simian COS cells was examined. In the absence of 2AP, the s4-encoded sigma 3 gene product was expressed about five times more efficiently...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(90)90235-j

    authors: Samuel CE,Brody MS

    更新日期:1990-05-01 00:00:00

  • Relationship between anti-Tax antibody responses and cocultivatable virus in HTLV-I-infected rabbits.

    abstract::The presence of anti-Tax antibody responses in human T cell leukemia virus type I (HTLV-I)-infected individuals has been correlated with increased proviral load, increased risk of transmitting infection, and increased risk of developing tropical spastic paraparesis/HTLV-I-associated myelopathy (TSP/HAM). In this study...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1998.9378

    authors: Lydy SL,Conner ME,Marriott SJ

    更新日期:1998-10-10 00:00:00

  • The carboxy-terminal domain is essential for stability and not for virion incorporation of HIV-1 Vpr into virus particles.

    abstract::Vpr is one of the auxiliary gene products encoded by HIV-1 genome. Vpr is a 14-kDa protein and exhibits several interesting characteristics including incorporation into virus particles, oligomerization, localization in the nucleus, and positive regulation of virus replication in primary cells. In an effort to define t...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1995.0079

    authors: Mahalingam S,Patel M,Collman RG,Srinivasan A

    更新日期:1995-12-20 00:00:00

  • The release of bluetongue virus from infected cells and their superinfection by progeny virus.

    abstract::Immunoelectron microscopy using an anti-VP2 monoclonal antibody complexed to colloidal gold has been used to study the mechanism of bluetongue virus (BTV) release from infected cells. Examination of the BTV-infected cell surface revealed that viruses are released both as enveloped particles, by budding through the pla...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(89)90218-3

    authors: Hyatt AD,Eaton BT,Brookes SM

    更新日期:1989-11-01 00:00:00

  • Characterization of hepatitis A virus structural proteins.

    abstract::HAV particles isolated from infected cells banded at buoyant densities of 1.42, 1.32, and 1.20 g/ml, and distinctive protein patterns were established by gel electrophoresis and reverse phase high performance liquid chromatography. The relatively higher amounts of p30 in particles with lower buoyant densities suggest ...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(86)90234-5

    authors: Gauss-Müller V,Lottspeich F,Deinhardt F

    更新日期:1986-12-01 00:00:00

  • Early antibody responses map to non-protective, PCV2 capsid protein epitopes.

    abstract::Porcine circovirus type 2 (PCV2) is an economically important cause of post-weaning multisystemic wasting syndrome (PMWS) in weanling piglets. Current commercial vaccines against PCV2 are highly effective. Yet, a recurring emergence of new genotypes in vaccinated herds necessitates a better understanding of protective...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2019.11.008

    authors: Ilha M,Nara P,Ramamoorthy S

    更新日期:2020-01-15 00:00:00

  • Regulation of a geminivirus coat protein promoter by AL2 protein (TrAP): evidence for activation and derepression mechanisms.

    abstract::Tomato golden mosaic virus (TGMV) is a bipartite member of the subgroup III Geminiviridae. Like all geminiviruses, TGMV replicates in the nucleus of susceptible cells by rolling circle replication (RCR). Double-stranded replicative form DNA generated during RCR serves as template for the transcription of viral genes b...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1997.8549

    authors: Sunter G,Bisaro DM

    更新日期:1997-06-09 00:00:00

  • Molecular cloning of a novel human papillomarvirus (type 58) from an invasive cervical carcinoma.

    abstract::A novel human papillomavirus type (HPV) was cloned from an invasive cervical carcinoma. The viral clone showed no homology with other known prototypes of HPV (HPV-1 through HPV-57), except HPV-33 by Southern blot analysis under stringent conditions. It showed less than 20% homology to HPV-33 by reassociation kinetic a...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(90)90560-e

    authors: Matsukura T,Sugase M

    更新日期:1990-08-01 00:00:00

  • Monoclonal antibodies raised to purified woodchuck hepatitis virus core antigen particles demonstrate X antigen reactivity.

    abstract::Woodchuck hepatitis core antigen (WHcAg) particles purified from the liver of chronically infected animals were used for monoclonal antibody production. Most of the putative clones demonstrated anti-WHc specificity. However, the supernatants from several putative clones bound X antigen sequences from woodchuck hepatit...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(90)90491-9

    authors: Feitelson MA,Clayton MM,Phimister B

    更新日期:1990-07-01 00:00:00

  • Mapping of HIV-1 determinants of apoptosis in infected T cells.

    abstract::HIV-1 infection leads to death of CD4(+) T cells in vivo and in vitro, although the mechanisms of this cell death are not well defined. We used flow cytometry to concurrently analyze infection and apoptosis of the CD4(+) CEM T cell line and human peripheral blood mononuclear cells (PBMC). Surprisingly, T cells product...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1998.9459

    authors: Rapaport E,Casella CR,Ikl,Mustafa F,Isaak D,Finkel TH

    更新日期:1998-12-20 00:00:00

  • Raccoon poxvirus feline panleukopenia virus VP2 recombinant protects cats against FPV challenge.

    abstract::An infectious raccoon poxvirus (RCNV) was used to express the feline panleukopenia virus (FPV) open reading frame VP2. The recombinant, RCNV/FPV, was constructed by homologous recombination with a chimeric plasmid for inserting the expression cassette into the thymidine kinase (TK) locus of RCNV. Expression of the VP2...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1996.0186

    authors: Hu L,Esposito JJ,Scott FW

    更新日期:1996-04-01 00:00:00

  • Analysis of the site occupancy constraints of primary amino acid sequences in the motif directing palmitylation of the vaccinia virus 37-kDa envelope protein.

    abstract::Vaccinia virus (VV) encodes a 37-kDa envelope protein (p37) that is palmitylated on cysteine residues 185186 of the 372-amino acid protein. We have previously reported on a loosely conserved consensus motif. Further analysis has identified a conserved consensus sequence, Hydro*AAC(C)A (Hydro* represents a hydrophobic ...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1998.9543

    authors: Hansen SG,Grosenbach DW,Hruby DE

    更新日期:1999-02-01 00:00:00

  • The nectin-1alpha transmembrane domain, but not the cytoplasmic tail, influences cell fusion induced by HSV-1 glycoproteins.

    abstract::Nectin-1 is a receptor for herpes simplex virus (HSV), a member of the immunoglobulin superfamily, and a cellular adhesion molecule. To study domains of nectin-1alpha involved in cell fusion, we measured the ability of nectin-1alpha/nectin-2alpha chimeras, nectin-1alpha/CD4 chimeras, and transmembrane domain and cytop...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2005.05.031

    authors: Subramanian RP,Dunn JE,Geraghty RJ

    更新日期:2005-09-01 00:00:00

  • The structure of adeno-associated virus serotype 3B (AAV-3B): insights into receptor binding and immune evasion.

    abstract::Adeno-associated viruses (AAVs) are leading candidate vectors for human gene therapy. AAV serotypes have broad cellular tropism and use a variety of cellular receptors. AAV serotype 3 binds to heparan sulfate proteoglycan prior to cell entry and is serologically distinct from other serotypes. The capsid features that ...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2010.03.027

    authors: Lerch TF,Xie Q,Chapman MS

    更新日期:2010-07-20 00:00:00

  • Baculovirus-expressed glycoprotein E (gE) of herpes simplex virus type-1 (HSV-1) protects mice against lethal intraperitoneal and lethal ocular HSV-1 challenge.

    abstract::We have constructed a recombinant baculovirus expressing high levels of the herpes simplex virus type 1 (HSV-1) glycoprotein E (gE) in Sf9 cells. The expressed gE migrated on gels as a double band with apparent molecular weights of 68 and 70 kDa. The recombinant gE was glycosylated based on its susceptibility to tunic...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(92)90500-o

    authors: Ghiasi H,Kaiwar R,Nesburn AB,Slanina S,Wechsler SL

    更新日期:1992-06-01 00:00:00

  • Small amino acid sequence changes within the V2 domain can affect the function of a T-cell line-tropic human immunodeficiency virus type 1 envelope gp120.

    abstract::Prior studies with recombinant viruses constructed in vitro showed that the V2 domain of envelope gp120, in addition to the required V3 domain, enhances the efficiency of infection of primary macrophages by HIV-1. Present structural studies on the gp120s of these recombinant viruses using three human monoclonal antibo...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1995.1010

    authors: Koito A,Stamatatos L,Cheng-Mayer C

    更新日期:1995-02-01 00:00:00

  • Changes of the receptor-binding properties of influenza B virus B/Victoria/504/2000 during adaptation in chicken eggs.

    abstract::Selection of high-growth virus variants of strain B/Victoria/504/2000 by serial passage in eggs resulted in three amino acid substitutions, G141E, R162M, and D196Y, in the vicinity of the receptor-binding pocket of viral hemagglutinin. Virus variants containing the identified amino acid substitutions, individually or ...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2009.08.014

    authors: Lugovtsev VY,Smith DF,Weir JP

    更新日期:2009-11-25 00:00:00

  • SYNCRIP (synaptotagmin-binding, cytoplasmic RNA-interacting protein) is a host factor involved in hepatitis C virus RNA replication.

    abstract::Hepatitis C virus (HCV) RNA replication requires viral nonstructural proteins as well as cellular factors. Recently, a cellular protein, synaptotagmin-binding, cytoplasmic RNA-interacting protein (SYNCRIP), also known as NSAP1, was found to bind HCV RNA and enhance HCV IRES-dependent translation. We investigate whethe...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2009.01.018

    authors: Liu HM,Aizaki H,Choi KS,Machida K,Ou JJ,Lai MM

    更新日期:2009-04-10 00:00:00

  • Physical characterization of the genome of feline herpesvirus-1.

    abstract::The physical structure of the genome of feline herpesvirus-1, a major upper respiratory tract pathogen of cats, was studied. Purified FHV-1 DNA was analyzed by restriction endonuclease and gamma 5' exonuclease digestion, blot hybridization, and electron microscopy. To facilitate further studies, nine bacteriophage clo...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(86)90439-3

    authors: Rota PA,Maes RK,Ruyechan WT

    更新日期:1986-10-15 00:00:00

  • Loss of the N-linked glycosylation site at position 386 in the HIV envelope V4 region enhances macrophage tropism and is associated with dementia.

    abstract::HIV infects macrophages and microglia in the central nervous system (CNS). Mechanisms that enhance HIV macrophage/microglial tropism are not well understood. Here, we identify an HIV Env variant in the V4 region of gp120, Asp 386 (D386), that eliminates an N-linked glycosylation site at position 386, enhances viral re...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2007.05.029

    authors: Dunfee RL,Thomas ER,Wang J,Kunstman K,Wolinsky SM,Gabuzda D

    更新日期:2007-10-10 00:00:00

  • Preferential replication of FIV in activated CD4(+)CD25(+)T cells independent of cellular proliferation.

    abstract::Studies attempting to identify reservoirs of HIV-1 latency have documented that the virus persists as both a latent and productive infection in subsets of CD4(+) cells. Reports regarding establishment of a stable HIV-1 infection in quiescent T cells in vitro, however, are controversial. In the present study, we invest...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2004.01.014

    authors: Joshi A,Vahlenkamp TW,Garg H,Tompkins WA,Tompkins MB

    更新日期:2004-04-10 00:00:00

  • An insertion mutation in the pol gene of Moloney murine leukemia virus results in temperature-sensitive pol maturation and viral replication.

    abstract::An insertion mutation in the pol gene of Moloney murine leukemia virus (M-MuLV) was found to render the virus temperature-sensitive for replication. A provirus containing a 12-bp insertion at the boundary between the reverse transcriptase (RT) and integrase (IN) domains induced the formation of mutant virions containi...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(89)90428-5

    authors: Tanese N,Roth M,Epstein H,Goff SP

    更新日期:1989-06-01 00:00:00

  • cDNA cloning of each genomic segment of the group B rotavirus ADRV: molecular characterization of the 11th RNA segment.

    abstract::The group B noncultivatable rotavirus, ADRV, was purified from infected stool specimens. Double-stranded RNA was extracted, polyadenylated, reverse transcribed into cDNA, and cloned into plasmid vector pAT153. Each cDNA clone hybridized to a single ADRV RNA segment and cDNA clones of each genomic RNA segment were iden...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(90)90450-6

    authors: Chen GM,Hung T,Mackow ER

    更新日期:1990-04-01 00:00:00

  • Chlorella virus NY-2A encodes at least 12 DNA endonuclease/methyltransferase genes.

    abstract::The 380-kb chlorella virus NY-2A genome is highly methylated; 45% of the cytosines are 5-methylcytosine (5mC) and 37% of the adenines are N6-methyladenine (6mA). Based on the sensitivity/resistance of NY-2A DNA to 80 methylation-sensitive DNA restriction endonucleases, the virus is predicted to encode at least 10 DNA ...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1997.8936

    authors: Zhang Y,Nelson M,Nietfeldt J,Xia Y,Burbank D,Ropp S,Van Etten JL

    更新日期:1998-01-20 00:00:00

  • A membrane-associated movement protein of Pelargonium flower break virus shows RNA-binding activity and contains a biologically relevant leucine zipper-like motif.

    abstract::Two small viral proteins (DGBp1 and DGBp2) have been proposed to act in a concerted manner to aid intra- and intercellular trafficking of carmoviruses though the distribution of functions and mode of action of each protein partner are not yet clear. Here we have confirmed the requirement of the DGBps of Pelargonium fl...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2011.03.001

    authors: Martínez-Turiño S,Hernández C

    更新日期:2011-05-10 00:00:00

  • Sequence and analysis of the capsid protein of Nudaurelia capensis omega virus, an insect virus with T = 4 icosahedral symmetry.

    abstract::We have determined the nucleotide sequence of the RNA2 segment of the Nudaurelia capensis omega virus genome. It was found to consist of 2448 nucleotides and contained one long open reading frame (ORF) encoding the 644 residue capsid protein. The deduced amino acid sequence of this protein reveals a positively charged...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(92)90918-f

    authors: Agrawal DK,Johnson JE

    更新日期:1992-10-01 00:00:00

  • Analysis of JC virus DNA replication using a quantitative and high-throughput assay.

    abstract::Progressive Multifocal Leukoencephalopathy (PML) is caused by lytic replication of JC virus (JCV) in specific cells of the central nervous system. Like other polyomaviruses, JCV encodes a large T-antigen helicase needed for replication of the viral DNA. Here, we report the development of a luciferase-based, quantitati...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2014.07.042

    authors: Shin J,Phelan PJ,Chhum P,Bashkenova N,Yim S,Parker R,Gagnon D,Gjoerup O,Archambault J,Bullock PA

    更新日期:2014-11-01 00:00:00

  • Protection against polyoma virus-induced tumors is perforin-independent.

    abstract::CD8 T cells are necessary for controlling tumors induced by mouse polyoma virus (PyV), but the effector mechanism(s) responsible have not been determined. We examined the PyV tumorigenicity in C57BL/6 mice mutated in Fas or carrying targeted disruptions in the perforin gene or in both TNF receptor type I and type II g...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2006.08.044

    authors: Byers AM,Hadley A,Lukacher AE

    更新日期:2007-02-20 00:00:00

  • Establishment and characterization of equine fibroblast cell lines transformed in vivo and in vitro by BPV-1: model systems for equine sarcoids.

    abstract::It is now widely recognized that BPV-1 and less commonly BPV-2 are the causative agents of equine sarcoids. Here we present the generation of equine cell lines harboring BPV-1 genomes and expressing viral genes. These lines have been either explanted from sarcoid biopsies or generated in vitro by transfection of prima...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2007.11.037

    authors: Yuan ZQ,Gault EA,Gobeil P,Nixon C,Campo MS,Nasir L

    更新日期:2008-04-10 00:00:00

  • The incorporation of reovirus cell attachment protein sigma 1 into virions requires the N-terminal hydrophobic tail and the adjacent heptad repeat region.

    abstract::The N-terminal portion of the reovirus cell attachment protein sigma 1 has recently been shown to possess intrinsic oligomerization and virion-anchoring functions. Sequence analysis of the sigma 1 proteins of the three reovirus serotypes has revealed the presence of distinct structural domains within this region: a te...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(91)90678-5

    authors: Leone G,Mah DC,Lee PW

    更新日期:1991-05-01 00:00:00