Inference in the Brain: Statistics Flowing in Redundant Population Codes.

Abstract:

:It is widely believed that the brain performs approximate probabilistic inference to estimate causal variables in the world from ambiguous sensory data. To understand these computations, we need to analyze how information is represented and transformed by the actions of nonlinear recurrent neural networks. We propose that these probabilistic computations function by a message-passing algorithm operating at the level of redundant neural populations. To explain this framework, we review its underlying concepts, including graphical models, sufficient statistics, and message-passing, and then describe how these concepts could be implemented by recurrently connected probabilistic population codes. The relevant information flow in these networks will be most interpretable at the population level, particularly for redundant neural codes. We therefore outline a general approach to identify the essential features of a neural message-passing algorithm. Finally, we argue that to reveal the most important aspects of these neural computations, we must study large-scale activity patterns during moderately complex, naturalistic behaviors.

journal_name

Neuron

journal_title

Neuron

authors

Pitkow X,Angelaki DE

doi

10.1016/j.neuron.2017.05.028

subject

Has Abstract

pub_date

2017-06-07 00:00:00

pages

943-953

issue

5

eissn

0896-6273

issn

1097-4199

pii

S0896-6273(17)30466-X

journal_volume

94

pub_type

杂志文章,评审

相关文献

NEURON文献大全
  • Neural regulation of hematopoiesis, inflammation, and cancer.

    abstract::Although the function of the autonomic nervous system (ANS) in mediating the flight-or-fight response was recognized decades ago, the crucial role of peripheral innervation in regulating cell behavior and response to the microenvironment has only recently emerged. In the hematopoietic system, the ANS regulates stem ce...

    journal_title:Neuron

    pub_type: 杂志文章,评审

    doi:10.1016/j.neuron.2015.01.026

    authors: Hanoun M,Maryanovich M,Arnal-Estapé A,Frenette PS

    更新日期:2015-04-22 00:00:00

  • Re-exploring Mechanisms of Exploration.

    abstract::Deciding when to exploit what is already known and when to explore new possibilities is crucial for adapting to novel and dynamic environments. Using reinforcement-based decision making, Costa et al. (2019) in this issue of Neuron find that neurons in the amygdala and ventral-striatum differentially signal the benefit...

    journal_title:Neuron

    pub_type: 评论,杂志文章

    doi:10.1016/j.neuron.2019.07.021

    authors: Reitich-Stolero T,Aberg KC,Paz R

    更新日期:2019-08-07 00:00:00

  • RNA editing generates a diverse array of transcripts encoding squid Kv2 K+ channels with altered functional properties.

    abstract::We have cloned a Kv2 potassium channel from squid optic lobe termed sqKv2. Multiple overlapping sqKv2 cDNA clones differed from one another at specific positions by purine transitions. To test whether the purine transitions were generated by RNA editing, we compared a 360 nucleotide genomic sequence with corresponding...

    journal_title:Neuron

    pub_type: 杂志文章

    doi:10.1016/s0896-6273(00)80383-9

    authors: Patton DE,Silva T,Bezanilla F

    更新日期:1997-09-01 00:00:00

  • Regulation of releasable vesicle pool sizes by protein kinase A-dependent phosphorylation of SNAP-25.

    abstract::Protein kinase A (PKA) is a key regulator of neurosecretion, but the molecular targets remain elusive. We combined pharmacological manipulations of kinase and phosphatase activities with mutational studies on the exocytotic machinery driving fusion of catecholamine-containing vesicles from chromaffin cells. We found t...

    journal_title:Neuron

    pub_type: 杂志文章

    doi:10.1016/s0896-6273(04)00038-8

    authors: Nagy G,Reim K,Matti U,Brose N,Binz T,Rettig J,Neher E,Sørensen JB

    更新日期:2004-02-05 00:00:00

  • Subunit composition, protein interactions, and structures of the mammalian brain sec6/8 complex and septin filaments.

    abstract::Both the sec6/8 complex and septin filaments have been implicated in directing vesicles and proteins to sites of active membrane addition in yeast. The rat brain sec6/8 complex coimmunoprecipitates with a filament composed of four mammalian septins, suggesting an interaction between these complexes. One of the septins...

    journal_title:Neuron

    pub_type: 杂志文章

    doi:10.1016/s0896-6273(00)80493-6

    authors: Hsu SC,Hazuka CD,Roth R,Foletti DL,Heuser J,Scheller RH

    更新日期:1998-06-01 00:00:00

  • Australian Brain Alliance.

    abstract::A proposal for an Australian Brain Initiative (ABI) is under development by members of the Australian Brain Alliance. Here we discuss the goals of the ABI, its areas of research focus, its context in the Australian research setting, and its necessity for ensuring continued success for Australian brain research. ...

    journal_title:Neuron

    pub_type: 杂志文章

    doi:10.1016/j.neuron.2016.10.038

    authors: Australian Brain Alliance Steering Committee.

    更新日期:2016-11-02 00:00:00

  • Cerebellar Transcriptome Profiles of ATXN1 Transgenic Mice Reveal SCA1 Disease Progression and Protection Pathways.

    abstract::SCA1, a fatal neurodegenerative disorder, is caused by a CAG expansion encoding a polyglutamine stretch in the protein ATXN1. We used RNA sequencing to profile cerebellar gene expression in Pcp2-ATXN1[82Q] mice with ataxia and progressive pathology and Pcp2-ATXN1[30Q]D776 animals having ataxia in absence of Purkinje c...

    journal_title:Neuron

    pub_type: 杂志文章

    doi:10.1016/j.neuron.2016.02.011

    authors: Ingram M,Wozniak EAL,Duvick L,Yang R,Bergmann P,Carson R,O'Callaghan B,Zoghbi HY,Henzler C,Orr HT

    更新日期:2016-03-16 00:00:00

  • BK channels: the spring between sensor and gate.

    abstract::K+ channels contain two main functional domains, an ion-selective pore and a sensor that determines whether the cytoplasmic pore gate is open or closed. In this issue of Neuron, Niu et al. provide compelling evidence that the link between sensor and gate is a remarkably simple mechanical spring. ...

    journal_title:Neuron

    pub_type: 评论,杂志文章

    doi:10.1016/j.neuron.2004.05.017

    authors: Papazian DM

    更新日期:2004-06-10 00:00:00

  • Synapse and Active Zone Assembly in the Absence of Presynaptic Ca2+ Channels and Ca2+ Entry.

    abstract::Presynaptic CaV2 channels are essential for Ca2+-triggered exocytosis. In addition, there are two competing models for their roles in synapse structure. First, Ca2+ channels or Ca2+ entry may control synapse assembly. Second, active zone proteins may scaffold CaV2s to presynaptic release sites, and synapse structure i...

    journal_title:Neuron

    pub_type: 杂志文章

    doi:10.1016/j.neuron.2020.05.032

    authors: Held RG,Liu C,Ma K,Ramsey AM,Tarr TB,De Nola G,Wang SSH,Wang J,van den Maagdenberg AMJM,Schneider T,Sun J,Blanpied TA,Kaeser PS

    更新日期:2020-08-19 00:00:00

  • How quickly can GABAA receptors open?

    abstract::We have examined GABAA receptor activation by making rapid applications of GABA to outside-out patches excised from cultured postnatal rat cerebellar neurons. The rate of development of current increases with increasing GABA concentration from a low to a high concentration asymptote. The low concentration asymptote is...

    journal_title:Neuron

    pub_type: 杂志文章

    doi:10.1016/0896-6273(94)90152-x

    authors: Maconochie DJ,Zempel JM,Steinbach JH

    更新日期:1994-01-01 00:00:00

  • Alpha cells take off first.

    abstract::Using a transgenic mouse line in which GFP is expressed in a single population of retinal ganglion cells (RGCs), Huberman and colleagues report in this issue of Neuron that the axon terminals of RGCs exhibit an orderly pattern of distribution in the higher visual centers. This pattern undergoes a developmental refinem...

    journal_title:Neuron

    pub_type: 评论,杂志文章

    doi:10.1016/j.neuron.2008.08.001

    authors: He S

    更新日期:2008-08-14 00:00:00

  • Early motor neuron pool identity and muscle nerve trajectory defined by postmitotic restrictions in Nkx6.1 activity.

    abstract::The fidelity with which spinal motor neurons innervate their limb target muscles helps to coordinate motor behavior, but the mechanisms that determine precise patterns of nerve-muscle connectivity remain obscure. We show that Nkx6 proteins, a set of Hox-regulated homeodomain transcription factors, are expressed by mot...

    journal_title:Neuron

    pub_type: 杂志文章

    doi:10.1016/j.neuron.2007.11.033

    authors: De Marco Garcia NV,Jessell TM

    更新日期:2008-01-24 00:00:00

  • The cadherin Flamingo mediates level-dependent interactions that guide photoreceptor target choice in Drosophila.

    abstract::Quantitative differences in cadherin activity have been proposed to play important roles in patterning connections between pre- and postsynaptic neurons. However, no examples of such a function have yet been described, and the mechanisms that would allow such differences to direct growth cones to specific synaptic tar...

    journal_title:Neuron

    pub_type: 杂志文章

    doi:10.1016/j.neuron.2008.01.007

    authors: Chen PL,Clandinin TR

    更新日期:2008-04-10 00:00:00

  • Control over conflict during movement preparation: role of posterior parietal cortex.

    abstract::Flexible behavior in humans often requires that rapid choices be made between conflicting action plans. Although much attention has focused on prefrontal regions, little is understood about the contribution of parietal cortex under situations of response conflict. Here we show that right parietal damage associated wit...

    journal_title:Neuron

    pub_type: 杂志文章

    doi:10.1016/j.neuron.2008.02.009

    authors: Coulthard EJ,Nachev P,Husain M

    更新日期:2008-04-10 00:00:00

  • G1 phase regulation, area-specific cell cycle control, and cytoarchitectonics in the primate cortex.

    abstract::We have investigated the cell cycle-related mechanisms that lead to the emergence of primate areas 17 and 18. These areas are characterized by striking differences in cytoarchitectonics and neuron number. We show in vivo that (1) area 17 precursors of supragranular neurons exhibit a shorter cell cycle duration, a redu...

    journal_title:Neuron

    pub_type: 杂志文章

    doi:10.1016/j.neuron.2005.06.032

    authors: Lukaszewicz A,Savatier P,Cortay V,Giroud P,Huissoud C,Berland M,Kennedy H,Dehay C

    更新日期:2005-08-04 00:00:00

  • Serotonin-induced regulation of the actin network for learning-related synaptic growth requires Cdc42, N-WASP, and PAK in Aplysia sensory neurons.

    abstract::Application of Clostridium difficile toxin B, an inhibitor of the Rho family of GTPases, at the Aplysia sensory to motor neuron synapse blocks long-term facilitation and the associated growth of new sensory neuron varicosities induced by repeated pulses of serotonin (5-HT). We have isolated cDNAs encoding Aplysia Rho,...

    journal_title:Neuron

    pub_type: 杂志文章

    doi:10.1016/j.neuron.2005.01.044

    authors: Udo H,Jin I,Kim JH,Li HL,Youn T,Hawkins RD,Kandel ER,Bailey CH

    更新日期:2005-03-24 00:00:00

  • Channelopathic pain: a growing but still small list of model disorders.

    abstract::In this issue of Neuron, Kremeyer et al. describe a gain-of-function mutation of TRPA1 that produces a painful disorder, familial episodic pain syndrome. This discovery enlarges the list of ion channels that, when mutated, produce pain. The growing universe of "channelopathic pain" presents some interesting overarchin...

    journal_title:Neuron

    pub_type: 评论,杂志文章

    doi:10.1016/j.neuron.2010.05.029

    authors: Waxman SG

    更新日期:2010-06-10 00:00:00

  • Resolving Memory Circuits with Layer-Dependent fMRI.

    abstract::Memory encoding and retrieval require directional exchange of information between different areas in the medial temporal lobe. In this issue of Neuron, Koster et al. (2018) use high-resolution fMRI combined with state-of-the-art data analysis methods to trace the information flow in memory circuits in hippocampus and ...

    journal_title:Neuron

    pub_type: 评论,杂志文章

    doi:10.1016/j.neuron.2018.09.004

    authors: Goense J

    更新日期:2018-09-19 00:00:00

  • Patterns of fMRI activity dissociate overlapping functional brain areas that respond to biological motion.

    abstract::Accurate perception of the actions and intentions of other people is essential for successful interactions in a social environment. Several cortical areas that support this process respond selectively in fMRI to static and dynamic displays of human bodies and faces. Here we apply pattern-analysis techniques to arrive ...

    journal_title:Neuron

    pub_type: 杂志文章

    doi:10.1016/j.neuron.2006.02.004

    authors: Peelen MV,Wiggett AJ,Downing PE

    更新日期:2006-03-16 00:00:00

  • Loss of Aβ43 Production Caused by Presenilin-1 Mutations in the Knockin Mouse Brain.

    abstract::We recently reported that homozygous Presenilin-1 (Psen1) knockin (KI) mice carrying the familial Alzheimer's disease (FAD) mutation L435F or C410Y recapitulate the phenotypes of Psen1(-/-) mice. Production and steady-state levels of Aβ40 and Aβ42 are undetectable in KI/KI brains and reduced in KI/+ brains, though the...

    journal_title:Neuron

    pub_type: 评论,杂志文章

    doi:10.1016/j.neuron.2016.03.009

    authors: Xia D,Kelleher RJ 3rd,Shen J

    更新日期:2016-04-20 00:00:00

  • Psychopathology and the human connectome: toward a transdiagnostic model of risk for mental illness.

    abstract::The panoply of cognitive, affective, motivational, and social functions that underpin everyday human experience requires precisely choreographed patterns of interaction between networked brain regions. Perhaps not surprisingly, diverse forms of psychopathology are characterized by breakdowns in these interregional rel...

    journal_title:Neuron

    pub_type: 杂志文章,评审

    doi:10.1016/j.neuron.2012.06.002

    authors: Buckholtz JW,Meyer-Lindenberg A

    更新日期:2012-06-21 00:00:00

  • Heterosynaptic Plasticity Underlies Aversive Olfactory Learning in Drosophila.

    abstract::Although associative learning has been localized to specific brain areas in many animals, identifying the underlying synaptic processes in vivo has been difficult. Here, we provide the first demonstration of long-term synaptic plasticity at the output site of the Drosophila mushroom body. Pairing an odor with activati...

    journal_title:Neuron

    pub_type: 杂志文章

    doi:10.1016/j.neuron.2015.11.003

    authors: Hige T,Aso Y,Modi MN,Rubin GM,Turner GC

    更新日期:2015-12-02 00:00:00

  • Homeostatic matching and nonlinear amplification at identified central synapses.

    abstract::Here we describe the properties of a synapse in the Drosophila antennal lobe and show how they can explain certain sensory computations in this brain region. The synapse between olfactory receptor neurons (ORNs) and projection neurons (PNs) is very strong, reflecting a large number of release sites and high release pr...

    journal_title:Neuron

    pub_type: 杂志文章

    doi:10.1016/j.neuron.2008.02.030

    authors: Kazama H,Wilson RI

    更新日期:2008-05-08 00:00:00

  • Practice with sleep makes perfect: sleep-dependent motor skill learning.

    abstract::Improvement in motor skill performance is known to continue for at least 24 hr following training, yet the relative contributions of time spent awake and asleep are unknown. Here we provide evidence that a night of sleep results in a 20% increase in motor speed without loss of accuracy, while an equivalent period of t...

    journal_title:Neuron

    pub_type: 杂志文章

    doi:10.1016/s0896-6273(02)00746-8

    authors: Walker MP,Brakefield T,Morgan A,Hobson JA,Stickgold R

    更新日期:2002-07-03 00:00:00

  • The headache of a hyperactive calcium channel.

    abstract::Migraine is thought to be triggered by excessive neocortical neuronal excitability that leads to cortical spreading depression. In this issue of Neuron, Tottene et al. study a mouse model of familial hemiplegic migraine type 1, and provide evidence for the hyperactivity of P/Q-type calcium channel-mediated cortical gl...

    journal_title:Neuron

    pub_type: 评论,杂志文章

    doi:10.1016/j.neuron.2009.02.015

    authors: Xue M,Rosenmund C

    更新日期:2009-03-12 00:00:00

  • Rare complete knockouts in humans: population distribution and significant role in autism spectrum disorders.

    abstract::To characterize the role of rare complete human knockouts in autism spectrum disorders (ASDs), we identify genes with homozygous or compound heterozygous loss-of-function (LoF) variants (defined as nonsense and essential splice sites) from exome sequencing of 933 cases and 869 controls. We identify a 2-fold increase i...

    journal_title:Neuron

    pub_type: 杂志文章

    doi:10.1016/j.neuron.2012.12.029

    authors: Lim ET,Raychaudhuri S,Sanders SJ,Stevens C,Sabo A,MacArthur DG,Neale BM,Kirby A,Ruderfer DM,Fromer M,Lek M,Liu L,Flannick J,Ripke S,Nagaswamy U,Muzny D,Reid JG,Hawes A,Newsham I,Wu Y,Lewis L,Dinh H,Gross S,W

    更新日期:2013-01-23 00:00:00

  • The declaration of independence of the neurovascular intimacy.

    abstract::In this issue of Neuron, Oh and Gu (2013) present a model in which intimately related embryonic nerves and blood vessels are patterned independently in response to different guidance cues from a central organizer: the whisker. ...

    journal_title:Neuron

    pub_type: 评论,杂志文章

    doi:10.1016/j.neuron.2013.09.040

    authors: Chauvet S,Mann F

    更新日期:2013-10-16 00:00:00

  • Calcium modulation and high calcium permeability of neuronal nicotinic acetylcholine receptors.

    abstract::Two properties were found to distinguish neuronal from muscle nicotinic acetylcholine receptors (nAChRs). First, neuronal nAChRs have a greater Ca2+ permeability. The high Ca2+ flux through neuronal nAChRs activates a Ca(2+)-dependent Cl- conductance, and the Ca2+ to Cs+ permeability ratio (PCa/PCs) is 7 times greater...

    journal_title:Neuron

    pub_type: 杂志文章

    doi:10.1016/0896-6273(92)90114-s

    authors: Vernino S,Amador M,Luetje CW,Patrick J,Dani JA

    更新日期:1992-01-01 00:00:00

  • Temporal Interval Learning in Cortical Cultures Is Encoded in Intrinsic Network Dynamics.

    abstract::Telling time and anticipating when external events will happen is among the most important tasks the brain performs. Yet the neural mechanisms underlying timing remain elusive. One theory proposes that timing is a general and intrinsic computation of cortical circuits. We tested this hypothesis using electrical and op...

    journal_title:Neuron

    pub_type: 杂志文章

    doi:10.1016/j.neuron.2016.05.042

    authors: Goel A,Buonomano DV

    更新日期:2016-07-20 00:00:00

  • Time Warping Reveals Hidden Features of Neuronal Population Responses.

    abstract::Neuronal population responses can vary across trials as a result of differences in the relative timing of internal brain processes. In this issue of Neuron, Williams et al. (2020) present an algorithm for inferring and inverting such trial-to-trial differences, thereby revealing an a priori hidden, precise temporal st...

    journal_title:Neuron

    pub_type: 评论,杂志文章

    doi:10.1016/j.neuron.2019.12.010

    authors: Okun M

    更新日期:2020-01-22 00:00:00