A semiautomatic method for rapid segmentation of velocity-encoded myocardial magnetic resonance imaging data.

Abstract:

PURPOSE:To develop a semiautomatic method for rapid segmentation of myocardial tissue phase mapping (TPM) data. METHODS:Manual segmentation of the myocardium was performed at end-diastole and end-systole. The points in both user-defined masks were then automatically tracked over the entire cardiac cycle using temporal integration of the velocity field. Paths that failed to visit both masks at the expected times were excluded, after which masks for all time points were generated automatically from the accepted paths. Midventricular and basal phase contrast TPM slices from 12 rats were segmented using the proposed method and fully manual segmentation. The results were compared using Dice's metric and Bland-Altman analysis, and interobserver variability was assessed. RESULTS:The semiautomatic method reduced the average user input time from 21 min to 1 min per slice. The Dice metrics between the methods were 0.88 ± 0.03 (midventricular) and 0.83 ± 0.06 (basal), and Bland-Altman limits of agreement of peak systolic and diastolic regional velocities were: midventricular: 0.05 ± 0.65 cm/s, -0.02 ± 0.42 cm/s, and -0.03 ± 0.40 cm/s (radial, tangential, longitudinal); basal: -0.04 ± 0.73 cm/s, 0.03 ± 0.60 cm/s, and -0.04 ± 0.48 cm/s (radial, tangential, longitudinal). Interobserver variability following semiautomatic segmentation was lower than for manual segmentation. CONCLUSION:The proposed method reduced the segmentation time substantially and exhibited well-preserved data quality and excellent interobserver limits of agreement. Magn Reson Med 78:1199-1207, 2017. © 2016 International Society for Magnetic Resonance in Medicine.

journal_name

Magn Reson Med

authors

Espe EKS,Skårdal K,Aronsen JM,Zhang L,Sjaastad I

doi

10.1002/mrm.26486

subject

Has Abstract

pub_date

2017-09-01 00:00:00

pages

1199-1207

issue

3

eissn

0740-3194

issn

1522-2594

journal_volume

78

pub_type

杂志文章
  • Highly accelerated real-time cardiac cine MRI using k-t SPARSE-SENSE.

    abstract::For patients with impaired breath-hold capacity and/or arrhythmias, real-time cine MRI may be more clinically useful than breath-hold cine MRI. However, commercially available real-time cine MRI methods using parallel imaging typically yield relatively poor spatio-temporal resolution due to their low image acquisition...

    journal_title:Magnetic resonance in medicine

    pub_type: 杂志文章

    doi:10.1002/mrm.24440

    authors: Feng L,Srichai MB,Lim RP,Harrison A,King W,Adluru G,Dibella EV,Sodickson DK,Otazo R,Kim D

    更新日期:2013-07-01 00:00:00

  • Assessing transneuronal dysfunction utilizing manganese-enhanced MRI (MEMRI).

    abstract::In this study we utilized manganese-enhanced MRI (MEMRI) to evaluate the in vivo transneuronal efficiency of manganese ion (Mn(2+)) movement as a means to assess overall changes in neuronal function. We designated this extension the manganese transfer index (MTI) value. To evaluate the MTI value as an index of transne...

    journal_title:Magnetic resonance in medicine

    pub_type: 杂志文章

    doi:10.1002/mrm.21648

    authors: Serrano F,Deshazer M,Smith KD,Ananta JS,Wilson LJ,Pautler RG

    更新日期:2008-07-01 00:00:00

  • Measurement of perfusion and permeability from dynamic contrast-enhanced MRI in normal and pathological vertebral bone marrow.

    abstract::Dynamic contrast-enhanced MRI data in vertebral bone marrow (vBM) are currently analyzed with descriptive indices. The purpose of this study was to develop and evaluate a quantitative approach, considering the tissue composition of vBM. Therefore, a measurement of the water fraction, f(wat), and the precontrast relaxa...

    journal_title:Magnetic resonance in medicine

    pub_type: 杂志文章

    doi:10.1002/mrm.22415

    authors: Biffar A,Sourbron S,Schmidt G,Ingrisch M,Dietrich O,Reiser MF,Baur-Melnyk A

    更新日期:2010-07-01 00:00:00

  • Fast diffusion tensor imaging and tractography of the whole cervical spinal cord using point spread function corrected echo planar imaging.

    abstract::Diffusion tensor imaging has been used in a number of spinal cord studies, but severe distortions caused by susceptibility induced field inhomogeneities limit its applicability to investigate small volumes within acceptable acquisition times. A way to evaluate image distortions is to map the point spread function of t...

    journal_title:Magnetic resonance in medicine

    pub_type: 杂志文章

    doi:10.1002/mrm.24235

    authors: Lundell H,Barthelemy D,Biering-Sørensen F,Cohen-Adad J,Nielsen JB,Dyrby TB

    更新日期:2013-01-01 00:00:00

  • Echo-volume imaging.

    abstract::Two single-shot volume imaging techniques are described. The first, single-echo echo-volume imaging, is essentially the echo-volume imaging (EVI) sequence suggested by Mansfield (J. Phys. C. 10, L55 (1977)). The second is a multi-spin-echo approach in which one plane of k-space is collected during each spin echo. In b...

    journal_title:Magnetic resonance in medicine

    pub_type: 杂志文章

    doi:10.1002/mrm.1910320518

    authors: Song AW,Wong EC,Hyde JS

    更新日期:1994-11-01 00:00:00

  • 3D compressed sensing for highly accelerated hyperpolarized (13)C MRSI with in vivo applications to transgenic mouse models of cancer.

    abstract::High polarization of nuclear spins in liquid state through hyperpolarized technology utilizing dynamic nuclear polarization has enabled the direct monitoring of (13)C metabolites in vivo at a high signal-to-noise ratio. Acquisition time limitations due to T(1) decay of the hyperpolarized signal require accelerated ima...

    journal_title:Magnetic resonance in medicine

    pub_type: 杂志文章

    doi:10.1002/mrm.22233

    authors: Hu S,Lustig M,Balakrishnan A,Larson PE,Bok R,Kurhanewicz J,Nelson SJ,Goga A,Pauly JM,Vigneron DB

    更新日期:2010-02-01 00:00:00

  • Contrast-enhanced MRI of brown adipose tissue after pharmacological stimulation.

    abstract::A non-invasive method for studying the modifications induced in lipid depots by hormonal stimulation could extend knowledge of adipose tissues. We studied the effect of adrenergic stimulation on interscapular brown adipose tissue (IBAT) of rats using contrast-enhanced MRI. Controls and rats pre-treated with adrenaline...

    journal_title:Magnetic resonance in medicine

    pub_type: 杂志文章

    doi:10.1002/mrm.20851

    authors: Sbarbati A,Cavallini I,Marzola P,Nicolato E,Osculati F

    更新日期:2006-04-01 00:00:00

  • Mean magnetic susceptibility regularized susceptibility tensor imaging (MMSR-STI) for estimating orientations of white matter fibers in human brain.

    abstract:PURPOSE:An increasing number of studies show that magnetic susceptibility in white matter fibers is anisotropic and may be described by a tensor. However, the limited head rotation possible for in vivo human studies leads to an ill-conditioned inverse problem in susceptibility tensor imaging (STI). Here we suggest the ...

    journal_title:Magnetic resonance in medicine

    pub_type: 杂志文章

    doi:10.1002/mrm.25322

    authors: Li X,van Zijl PC

    更新日期:2014-09-01 00:00:00

  • Cerebrospinal fluid pulse wave velocity measurements: In vitro and in vivo evaluation of a novel multiband cine phase-contrast MRI sequence.

    abstract:PURPOSE:Intracranial and intraspinal compliance are parameters of interest in the diagnosis and prediction of treatment outcome in patients with normal pressure hydrocephalus and other forms of communicating hydrocephalus. A noninvasive method to estimate the spinal cerebrospinal fluid (CSF) pulse wave velocity (PWV) a...

    journal_title:Magnetic resonance in medicine

    pub_type: 杂志文章

    doi:10.1002/mrm.28430

    authors: Sonnabend K,Brinker G,Maintz D,Bunck AC,Weiss K

    更新日期:2021-01-01 00:00:00

  • Water-suppressed one-dimensional 1H NMR spectroscopic imaging of myocardial metabolites in vivo.

    abstract::Excitation by conventional B1 pulses in surface coil chemical-shift imaging experiments yields resonance intensities that vary greatly with position. B1-compensated semi-selective pulses overcome much of this problem. These pulses are employed for excitation and refocusing in 1H NMR spectroscopic localization in the i...

    journal_title:Magnetic resonance in medicine

    pub_type: 杂志文章

    doi:10.1002/mrm.1910250118

    authors: Balschi JA,Hetherington HP,Pohost GM

    更新日期:1992-05-01 00:00:00

  • Investigation of resolution effects using a specialized diffusion tensor phantom.

    abstract:PURPOSE:The clinical potential of the diffusion imaging-based analysis of fine brain structures such as fornix or cingulum is high due to the central role of these structures in psychiatric diseases. However, the quantification of diffusion parameters in fine structures is especially prone to partial volume effects (PV...

    journal_title:Magnetic resonance in medicine

    pub_type: 杂志文章

    doi:10.1002/mrm.24774

    authors: Bach M,Fritzsche KH,Stieltjes B,Laun FB

    更新日期:2014-03-01 00:00:00

  • In vivo multiple-mouse MRI at 7 Tesla.

    abstract::We developed a live high-field multiple-mouse magnetic resonance imaging method to increase the throughput of imaging studies involving large numbers of mice. Phantom experiments were performed in 7 shielded radiofrequency (RF) coils for concurrent imaging on a 7 Tesla MRI scanner outfitted with multiple transmit and ...

    journal_title:Magnetic resonance in medicine

    pub_type: 杂志文章

    doi:10.1002/mrm.20683

    authors: Bock NA,Nieman BJ,Bishop JB,Mark Henkelman R

    更新日期:2005-11-01 00:00:00

  • Multi-turn transmit coil to increase b1 efficiency in current source amplification.

    abstract:PURPOSE:A multi-turn transmit surface coil design was presented to improve B1 efficiency when used with current source amplification. METHODS:Three different coil designs driven by an on-coil current-mode class-D amplifier with current envelope feedback were tested on the benchtop and through imaging in a 1.5 T scanne...

    journal_title:Magnetic resonance in medicine

    pub_type: 杂志文章

    doi:10.1002/mrm.24612

    authors: Gudino N,Griswold MA

    更新日期:2013-04-01 00:00:00

  • Carbon-13 "magic-angle" sample-spinning nuclear magnetic resonance studies of human myelin, and model membrane systems.

    abstract::We have obtained high-field (11.7 Tesla), high-resolution carbon-13 solid-state "magic-angle" sample-spinning nuclear magnetic resonance (NMR) spectra of a variety of phospholipids, sphingolipids, myelin and white matter samples, resolving and assigning over 40 resonances in the spectra of human and bovine myelin. The...

    journal_title:Magnetic resonance in medicine

    pub_type: 杂志文章

    doi:10.1002/mrm.1910290204

    authors: Husted C,Montez B,Le C,Moscarello MA,Oldfield E

    更新日期:1993-02-01 00:00:00

  • Improved reproducibility of right ventricular volumes and function estimation from cardiac magnetic resonance images using level-set models.

    abstract::This study aims to assess whether an alternative method, that is based on volumetric surface detection (VoSD) without tracing and is totally free of geometric assumptions, can improve the reproducibility of right ventricular (RV) volume quantification from cardiac magnetic resonance (CMR) images, in comparison with a ...

    journal_title:Magnetic resonance in medicine

    pub_type: 杂志文章

    doi:10.1002/mrm.21157

    authors: Catalano O,Corsi C,Antonaci S,Moro G,Mussida M,Frascaroli M,Baldi M,Caiani E,Lamberti C,Cobelli F

    更新日期:2007-03-01 00:00:00

  • 1H NMR relaxation measurements of human tissues in situ by spatially resolved spectroscopy.

    abstract::Spatially resolved spectroscopy (SPARS) is a method for obtaining high-resolution NMR spectra of well-defined volumes of human tissues in situ. This method was combined with the Carr-Purcell-Meiboom-Gill multiple-echo sequence for T2, and with inversion recovery for T1 relaxation measurements. Relaxation times obtaine...

    journal_title:Magnetic resonance in medicine

    pub_type: 杂志文章

    doi:10.1002/mrm.1910040504

    authors: Luyten PR,Anderson CM,den Hollander JA

    更新日期:1987-05-01 00:00:00

  • Simultaneous B(0)- and B(1)+-map acquisition for fast localized shim, frequency, and RF power determination in the heart at 3 T.

    abstract::High-field (>or=3 T) cardiac MRI is challenged by inhomogeneities of both the static magnetic field (B(0)) and the transmit radiofrequency field (B(1)+). The inhomogeneous B fields not only demand improved shimming methods but also impede the correct determination of the zero-order terms, i.e., the local resonance fre...

    journal_title:Magnetic resonance in medicine

    pub_type: 杂志文章

    doi:10.1002/mrm.22234

    authors: Schär M,Vonken EJ,Stuber M

    更新日期:2010-02-01 00:00:00

  • In vivo study of microbubbles as an MR susceptibility contrast agent.

    abstract::The potential application of gas microbubbles as a unique intravascular susceptibility contrast agent for MRI has not been fully explored. In this study, the MR susceptibility effect of an ultrasound microbubble contrast agent, Optison, was studied with rat liver imaging at 7 T. Optison suspension in two different dos...

    journal_title:Magnetic resonance in medicine

    pub_type: 杂志文章

    doi:10.1002/mrm.20181

    authors: Wong KK,Huang I,Kim YR,Tang H,Yang ES,Kwong KK,Wu EX

    更新日期:2004-09-01 00:00:00

  • Constrained length minimum inductance gradient coil design.

    abstract::A gradient coil design algorithm capable of controlling the position of the homogeneous region of interest (ROI) with respect to the current-carrying wires is required for many advanced imaging and spectroscopy applications. A modified minimum inductance target field method that allows the placement of a set of constr...

    journal_title:Magnetic resonance in medicine

    pub_type: 杂志文章

    doi:10.1002/mrm.1910390214

    authors: Chronik BA,Rutt BK

    更新日期:1998-02-01 00:00:00

  • Transmit and receive RF fields determination from a single low-tip-angle gradient-echo scan by scaling of SVD data.

    abstract:PURPOSE:A new method, called Transmit and Receive Patterns from Low-Tip-angle gradient-Echo Images (TRIPLET), is described which simultaneously maps the B1+ and B1- fields of a transmit/receive radiofrequency coil array. The input data are low-tip-angle gradient-echo images, which can be acquired in a relatively short ...

    journal_title:Magnetic resonance in medicine

    pub_type: 杂志文章

    doi:10.1002/mrm.24912

    authors: Sbrizzi A,Raaijmakers AJ,Hoogduin H,Lagendijk JJ,Luijten PR,van den Berg CA

    更新日期:2014-07-01 00:00:00

  • Reducing gradient imperfections for spiral magnetic resonance spectroscopic imaging.

    abstract::Spiral k-space magnetic resonance spectroscopic imaging (MRSI) requires high performance from gradient hardware systems. During the readout phase, oscillating gradients are continuously played out, which can cause undesired effects. These effects on the quality of SI data are non-intuitive because of their time-varyin...

    journal_title:Magnetic resonance in medicine

    pub_type: 杂志文章

    doi:10.1002/mrm.20928

    authors: Kim DH,Spielman DM

    更新日期:2006-07-01 00:00:00

  • Monitoring bone marrow-originated mesenchymal stem cell traffic to myocardial infarction sites using magnetic resonance imaging.

    abstract::How stem cells promote myocardial repair in myocardial infarction (MI) is not well understood. The purpose of this study was to noninvasively monitor and quantify mesenchymal stem cells (MSC) from bone marrow to MI sites using magnetic resonance imaging (MRI). MSC were dual-labeled with an enhanced green fluorescent p...

    journal_title:Magnetic resonance in medicine

    pub_type: 杂志文章

    doi:10.1002/mrm.22735

    authors: Yang Y,Schumacher A,Yang Y,Liu J,Shi X,Hill WD,Hu TC

    更新日期:2011-05-01 00:00:00

  • Noise removal in magnetic resonance diffusion tensor imaging.

    abstract::Although promising for visualizing the structure of ordered tissues, MR diffusion tensor imaging (DTI) has been hampered by long acquisition time and low spatial resolution associated with its inherently low signal-to-noise ratio (SNR). Moreover, the uncertainty in the DTI measurements has a direct impact on the accur...

    journal_title:Magnetic resonance in medicine

    pub_type: 杂志文章

    doi:10.1002/mrm.20582

    authors: Chen B,Hsu EW

    更新日期:2005-08-01 00:00:00

  • Partial field-of-view spiral phase-contrast imaging using complex difference processing.

    abstract::Rapid flow imaging was achieved with a partial field of view (pFOV) spiral motion-encoded technique. The FOV and the acquisition time were reduced by a factor of 2 by undersampling k-space. The pFOV spiral k-space trajectory aliased signals from outside a circular ring whose radius was inversely proportional to the di...

    journal_title:Magnetic resonance in medicine

    pub_type: 临床试验,杂志文章

    doi:10.1002/mrm.20975

    authors: Nezafat R,Thompson RB,Derbyshire JA,McVeigh ER

    更新日期:2006-09-01 00:00:00

  • SUPER: A blockwise curve-fitting method for accelerating MR parametric mapping with fast reconstruction.

    abstract:PURPOSE:To investigate Shift Undersampling improves Parametric mapping Efficiency and Resolution (SUPER), a novel blockwise curve-fitting method for accelerating parametric mapping with very fast reconstruction. METHODS:SUPER uses interleaved k-space undersampling, which enables a blockwise decomposition of the otherw...

    journal_title:Magnetic resonance in medicine

    pub_type: 杂志文章

    doi:10.1002/mrm.27662

    authors: Hu C,Peters DC

    更新日期:2019-06-01 00:00:00

  • Exploring the limits of RF shimming for high-field MRI of the human head.

    abstract::Several methods have been proposed for overcoming the effects of radiofrequency (RF) magnetic field inhomogeneity in high-field MRI. Some of these methods rely at least in part on the ability to independently control magnitude and phase of different drives in either one multielement RF coil or in different RF coils in...

    journal_title:Magnetic resonance in medicine

    pub_type: 杂志文章

    doi:10.1002/mrm.21013

    authors: Mao W,Smith MB,Collins CM

    更新日期:2006-10-01 00:00:00

  • B1AC-MAMBA: B1 array combined with multiple-acquisition micro B0 array parallel magnetic resonance imaging.

    abstract::The combination of an in-plane B(1) sensitivity encoding (SENSE) technique with a simultaneous multiple-slice B(0) field step technique (multiple-acquisition micro B(0) array (MAMBA)) has produced high scan time reduction factors (R < or = 8). In this study, two slices were acquired simultaneously in combination with ...

    journal_title:Magnetic resonance in medicine

    pub_type: 杂志文章

    doi:10.1002/mrm.10464

    authors: Paley MN,Lee KJ,Wild JM,Fichele S,Whitby EH,Wilkinson ID,Van Beek EJ,Griffiths PD

    更新日期:2003-06-01 00:00:00

  • Optimization of survey protocols for MRI.

    abstract::A method for evaluating the sensitivity of MRI protocols to changes in an arbitrary number of tissue parameters over a broad range of parameter values is presented. This analysis is useful for choosing an optimal basis set of images for either a "survey" protocol or tissue segmentation algorithms. A survey protocol is...

    journal_title:Magnetic resonance in medicine

    pub_type: 杂志文章

    doi:10.1002/mrm.1910130202

    authors: McVeigh ER,Henkelman RM,Bronskill MJ

    更新日期:1990-02-01 00:00:00

  • Longitudinal assessment of spinal cord injuries in nonhuman primates with quantitative magnetization transfer.

    abstract:PURPOSE:This study aimed to evaluate the reproducibility and specificity of quantitative magnetization transfer (qMT) imaging for monitoring spinal cord injuries (SCIs). METHODS:MRI scans were performed in anesthetized monkeys at 9.4T, before and serially after a unilateral lesion of the cervical spinal cord. A two-po...

    journal_title:Magnetic resonance in medicine

    pub_type: 杂志文章

    doi:10.1002/mrm.25725

    authors: Wang F,Li K,Mishra A,Gochberg D,Min Chen L,Gore JC

    更新日期:2016-04-01 00:00:00

  • In vivo 3.0-tesla magnetic resonance T1rho and T2 relaxation mapping in subjects with intervertebral disc degeneration and clinical symptoms.

    abstract::The purpose of this study is (1) to determine the correlation between T(1rho) and T(2) and degenerative grade in intervertebral discs using in vivo 3.0-T MRI, and (2) to determine the association between T(1rho) and T(2) and clinical findings as quantified by the SF-36 Questionnaire and Oswestry Disability Index. Sixt...

    journal_title:Magnetic resonance in medicine

    pub_type: 杂志文章

    doi:10.1002/mrm.22362

    authors: Blumenkrantz G,Zuo J,Li X,Kornak J,Link TM,Majumdar S

    更新日期:2010-05-01 00:00:00