Systematic Analysis of RNA Regulatory Network in Rat Brain after Ischemic Stroke.

Abstract:

:Although extensive studies have identified large number of microRNAs (miRNAs) and long noncoding RNAs (lncRNAs) in ischemic stroke, the RNA regulation network response to focal ischemia remains poorly understood. In this study, we simultaneously interrogate the expression profiles of lncRNAs, miRNAs, and mRNAs changes during focal ischemia induced by transient middle cerebral artery occlusion. A set of 1924 novel lncRNAs were identified and may involve brain injury and DNA repair as revealed by coexpression network analysis. Furthermore, many short interspersed elements (SINE) mediated lncRNA:mRNA duplexes were identified, implying that lncRNAs mediate Staufen1-mediated mRNA decay (SMD) which may play a role during focal ischemia. Moreover, based on the competitive endogenous RNA (ceRNA) hypothesis, a stroke regulatory ceRNA network which reveals functional lncRNA:miRNA:mRNA interactions was revealed in ischemic stroke. In brief, this work reports a large number of novel lncRNAs responding to focal ischemia and constructs a systematic RNA regulation network which highlighted the role of ncRNAs in ischemic stroke.

journal_name

Biomed Res Int

authors

Liu J,Zhang KS,Hu B,Li SG,Li Q,Luo YP,Wang Y,Deng ZF

doi

10.1155/2018/8354350

subject

Has Abstract

pub_date

2018-01-08 00:00:00

pages

8354350

eissn

2314-6133

issn

2314-6141

journal_volume

2018

pub_type

杂志文章
  • Noninvasive physiologic assessment of coronary stenoses using cardiac CT.

    abstract::Coronary CT angiography (CCTA) has become an important noninvasive imaging modality in the diagnosis of coronary artery disease (CAD). CCTA enables accurate evaluation of coronary artery stenosis. However, CCTA provides limited information on the physiological significance of stenotic lesions. A noninvasive "one-stop-...

    journal_title:BioMed research international

    pub_type: 杂志文章,评审

    doi:10.1155/2015/435737

    authors: Xu L,Sun Z,Fan Z

    更新日期:2015-01-01 00:00:00

  • Asiatic Acid Interferes with Invasion and Proliferation of Breast Cancer Cells by Inhibiting WAVE3 Activation through PI3K/AKT Signaling Pathway.

    abstract:Objective:To explore the ability of asiatic acid to interfere with the invasion and proliferation of breast cancer cells by inhibiting WAVE3 expression and activation through the PI3K/AKT signaling pathway. Methods:The MDA-MB-231 cells with strong invasiveness were screened by transwell assay, and plasmids with high e...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2020/1874387

    authors: Gou XJ,Bai HH,Liu LW,Chen HY,Shi Q,Chang LS,Ding MM,Shi Q,Zhou MX,Chen WL,Zhang LM

    更新日期:2020-02-10 00:00:00

  • Prediction of cardiovascular disease risk among low-income urban dwellers in metropolitan Kuala Lumpur, Malaysia.

    abstract::We aimed to predict the ten-year cardiovascular disease (CVD) risk among low-income urban dwellers of metropolitan Malaysia. Participants were selected from a cross-sectional survey conducted in Kuala Lumpur. To assess the 10-year CVD risk, we employed the Framingham risk scoring (FRS) models. Significant determinants...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2015/516984

    authors: Su TT,Amiri M,Mohd Hairi F,Thangiah N,Bulgiba A,Majid HA

    更新日期:2015-01-01 00:00:00

  • Relationship between Physical Activity and Physical Fitness in Preschool Children: A Cross-Sectional Study.

    abstract:Purpose:To evaluate the relationships between objectively measured physical activity and physical fitness among preschool children. Methods:A total of 346 participants (201 boys and 145 girls) aged 3.5-5.5 years (M = 4.5 yr, SD = 0.47) from Shanghai, China, completed physical fitness assessments, including triceps ski...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2017/9314026

    authors: Fang H,Quan M,Zhou T,Sun S,Zhang J,Zhang H,Cao Z,Zhao G,Wang R,Chen P

    更新日期:2017-01-01 00:00:00

  • Screening and Molecular Identification of Pectinase Producing Microbes from Coffee Pulp.

    abstract::Application of enzymes in biotechnological process has expanded considerably in recent years. In food and related industry, major importance was being attached to the use of enzymes in upgrading quality, increasing yields of extractive processes, product stabilization, and improvement of flavor and byproduct utilizati...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2018/2961767

    authors: Oumer OJ,Abate D

    更新日期:2018-04-03 00:00:00

  • Functional development of the circadian clock in the zebrafish pineal gland.

    abstract::The zebrafish constitutes a powerful model organism with unique advantages for investigating the vertebrate circadian timing system and its regulation by light. In particular, the remarkably early and rapid development of the zebrafish circadian system has facilitated exploring the factors that control the onset of ci...

    journal_title:BioMed research international

    pub_type: 杂志文章,评审

    doi:10.1155/2014/235781

    authors: Ben-Moshe Z,Foulkes NS,Gothilf Y

    更新日期:2014-01-01 00:00:00

  • Potential Role of the Last Half Repeat in TAL Effectors Revealed by a Molecular Simulation Study.

    abstract::TAL effectors (TALEs) contain a modular DNA-binding domain that is composed of tandem repeats. In all naturally occurring TALEs, the end of tandem repeats is invariantly a truncated half repeat. To investigate the potential role of the last half repeat in TALEs, we performed comparative molecular dynamics simulations ...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2016/8036450

    authors: Wan H,Chang S,Hu JP,Tian XH,Wang MH

    更新日期:2016-01-01 00:00:00

  • Application of Molecular Modeling to Development of New Factor Xa Inhibitors.

    abstract::In consequence of the key role of factor Xa in the clotting cascade and absence of its activity in the processes that do not affect coagulation, this protein is an attractive target for development of new blood coagulation inhibitors. Factor Xa is more effective and convenient target for creation of anticoagulants tha...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2015/120802

    authors: Sulimov VB,Gribkova IV,Kochugaeva MP,Katkova EV,Sulimov AV,Kutov DC,Shikhaliev KS,Medvedeva SM,Krysin MY,Sinauridze EI,Ataullakhanov FI

    更新日期:2015-01-01 00:00:00

  • The Melbourne assessment of Schizotypy in kids: a useful measure of childhood schizotypal personality disorder.

    abstract::Despite being identified as a high risk cohort for psychosis, there has been relatively little research on the clinical presentation and assessment of Schizotypal Personality Disorder (SPD) in childhood. The current study aimed to develop a measure of childhood SPD (Melbourne Assessment of Schizotypy in Kids (MASK)) a...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2015/635732

    authors: Jones HP,Testa RR,Ross N,Seal ML,Pantelis C,Tonge B

    更新日期:2015-01-01 00:00:00

  • An Improved Binary Differential Evolution Algorithm to Infer Tumor Phylogenetic Trees.

    abstract::Tumourigenesis is a mutation accumulation process, which is likely to start with a mutated founder cell. The evolutionary nature of tumor development makes phylogenetic models suitable for inferring tumor evolution through genetic variation data. Copy number variation (CNV) is the major genetic marker of the genome wi...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2017/5482750

    authors: Liang Y,Liao B,Zhu W

    更新日期:2017-01-01 00:00:00

  • Abnormal functional resting-state networks in ADHD: graph theory and pattern recognition analysis of fMRI data.

    abstract::The framework of graph theory provides useful tools for investigating the neural substrates of neuropsychiatric disorders. Graph description measures may be useful as predictor variables in classification procedures. Here, we consider several centrality measures as predictor features in a classification algorithm to i...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2014/380531

    authors: dos Santos Siqueira A,Biazoli Junior CE,Comfort WE,Rohde LA,Sato JR

    更新日期:2014-01-01 00:00:00

  • Seroprevalence and Associated Risk Factors for Toxoplasma gondii Infection in Healthy Blood Donors: A Cross-Sectional Study in Sonora, Mexico.

    abstract::Toxoplasma gondii (T. gondii) can be transmitted by blood transfusion. We determined the prevalence of T. gondii infection in healthy blood donors in Hermosillo city, Mexico, and the association of infection with T. gondii with the sociodemographic, clinical, and behavioral characteristics of blood donors. Four hundre...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2016/9597276

    authors: Alvarado-Esquivel C,Rascón-Careaga A,Hernández-Tinoco J,Corella-Madueño MA,Sánchez-Anguiano LF,Aldana-Madrid ML,Velasquez-Vega E,Quizán-Plata T,Navarro-Henze JL,Badell-Luzardo JA,Gastélum-Cano JM,Liesenfeld O

    更新日期:2016-01-01 00:00:00

  • Serum CCL21 as a Potential Biomarker for Cognitive Impairment in Spinal Cord Injury.

    abstract:Objective:Cognitive impairment is considered to be an important complication of spinal cord injury (SCI), but its underlying mechanism remains unclear. The purpose of this study is to explore whether serum CCL21 can be used as a potential biomarker of cognitive impairment in SCI. Methods:In Neck-Shoulder and Lumbocrur...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2020/6692802

    authors: Chen Y,Liang L,Cao S,Hou G,Zhang Q,Ma H,Shi B

    更新日期:2020-12-09 00:00:00

  • Misaponin B Induces G2/M Arrest, Cytokinesis Failure and Impairs Autophagy.

    abstract::Saponins are a group of naturally occurring plant glycosides with the features of their strong foam-forming properties and multibiological effects such as antitumor activity. Though Misaponin B, one of the triterpenoid saponins from Madhuca longifolia, is known to have spermicidal and antioxidant activity, the other b...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2020/5925094

    authors: Won G,Jung JH,Sohn EJ,Park JE,Kim H,Lee HJ,Shim BS,Kim SH

    更新日期:2020-02-07 00:00:00

  • Differential response of oyster shell powder on enzyme profile and nutritional value of oyster mushroom Pleurotus florida PF05.

    abstract::Oyster mushroom Pleurotus florida was cultivated on different combinations of wheat straw (WS) as basal substrate and oyster shell powder (OSP) supplement. The OSP supplementation considerably responded to different cultivation phases. The mycelium grew fast and showed rapid growth rate (8.91 mmd(-1)) in WS + OSP (97 ...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2014/386265

    authors: Naraian R,Narayan OP,Srivastava J

    更新日期:2014-01-01 00:00:00

  • Physical exercise-induced adult neurogenesis: a good strategy to prevent cognitive decline in neurodegenerative diseases?

    abstract::Cumulative evidence has indicated that there is an important role for adult hippocampal neurogenesis in cognitive function. With the increasing prevalence of cognitive decline associated with neurodegenerative diseases among the ageing population, physical exercise, a potent enhancer of adult hippocampal neurogenesis,...

    journal_title:BioMed research international

    pub_type: 杂志文章,评审

    doi:10.1155/2014/403120

    authors: Yau SY,Gil-Mohapel J,Christie BR,So KF

    更新日期:2014-01-01 00:00:00

  • Postsurgical pathologies associated with intradural electrical stimulation in the central nervous system: design implications for a new clinical device.

    abstract::Spinal cord stimulation has been utilized for decades in the treatment of numerous conditions such as failed back surgery and phantom limb syndromes, arachnoiditis, cancer pain, and others. The placement of the stimulating electrode array was originally subdural but, to minimize surgical complexity and reduce the risk...

    journal_title:BioMed research international

    pub_type: 杂志文章,评审

    doi:10.1155/2014/989175

    authors: Gibson-Corley KN,Flouty O,Oya H,Gillies GT,Howard MA

    更新日期:2014-01-01 00:00:00

  • Reduction in Endometrioma Size with Three Months of Aromatase Inhibition and Progestin Add-Back.

    abstract::The purpose of this study was to assess the impact of 3 months of aromatase inhibition together with progestin add-back on ovarian endometrioma size. This prospective cohort study was performed at University Medical Center (UC San Diego). Women trying to conceive were excluded. After informed consent, all women were t...

    journal_title:BioMed research international

    pub_type: 临床试验,杂志文章

    doi:10.1155/2015/878517

    authors: Agarwal SK,Foster WG

    更新日期:2015-01-01 00:00:00

  • Exosomal circLPAR1 Promoted Osteogenic Differentiation of Homotypic Dental Pulp Stem Cells by Competitively Binding to hsa-miR-31.

    abstract::Human dental pulp stem cells (DPSCs) hold great promise in bone regeneration. However, the exact mechanism of osteogenic differentiation of DPSCs remains unknown, especially the role of exosomes played in. The DPSCs were cultured and received osteogenic induction; then, exosomes from osteogenic-induced DPSCs (OI-DPSC-...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2020/6319395

    authors: Xie L,Guan Z,Zhang M,Lyu S,Thuaksuban N,Kamolmattayakul S,Nuntanaranont T

    更新日期:2020-09-28 00:00:00

  • The Assessment of the Integrated Antioxidant System of the Body in the Course of Radon Therapy: A Pilot Study.

    abstract:Introduction:The sources of Reactive Oxidative Species (ROS) in the organism are the respiratory processes occurring in cells catalyzed by different enzymes. Operation of ROS is balanced by antioxidants, the compounds; although present in low concentrations, they significantly inhibit the degree of oxidation of particu...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2018/6038106

    authors: Kuciel-Lewandowska J,Gnus J,Pawlik-Sobecka L,Płaczkowska S,Kokot I,Kasperczak M,Paprocka-Borowicz M

    更新日期:2018-01-02 00:00:00

  • Age dependent differences in collagen alignment of glutaraldehyde fixed bovine pericardium.

    abstract::Bovine pericardium is used for heart valve leaflet replacement where the strength and thinness are critical properties. Pericardium from neonatal animals (4-7 days old) is advantageously thinner and is considered as an alternative to that from adult animals. Here, the structures of adult and neonatal bovine pericardiu...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2014/189197

    authors: Sizeland KH,Wells HC,Higgins J,Cunanan CM,Kirby N,Hawley A,Mudie ST,Haverkamp RG

    更新日期:2014-01-01 00:00:00

  • Comparison of Predictive Powers for Mortality between Systemic Vascular Resistance Index and Serum Lactate in Children with Persistent Catecholamine-Resistant Shock.

    abstract::Persistent catecholamine-resistant shock in children causes severe morbidity and mortality. We aimed to analyze the association between hemodynamics and serum lactate at different time points and 28-day mortality in children with persistent catecholamine-resistant shock. Methods. Twenty-six children with persistent ca...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2020/1341326

    authors: Lee EP,Chu SC,Hsia SH,Chen KF,Chan OW,Lin CY,Su YT,Lin JJ,Wu HP

    更新日期:2020-06-19 00:00:00

  • Improvement of endurance of DMD animal model using natural polyphenols.

    abstract::Duchenne muscular dystrophy (DMD), the most common form of muscular dystrophy, is characterized by muscular wasting caused by dystrophin deficiency that ultimately ends in force reduction and premature death. In addition to primary genetic defect, several mechanisms contribute to DMD pathogenesis. Recently, antioxidan...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2015/680615

    authors: Sitzia C,Farini A,Colleoni F,Fortunato F,Razini P,Erratico S,Tavelli A,Fabrizi F,Belicchi M,Meregalli M,Comi G,Torrente Y

    更新日期:2015-01-01 00:00:00

  • Application of Compressive Sensing to Ultrasound Images: A Review.

    abstract::Compressive sensing (CS) offers compression of data below the Nyquist rate, making it an attractive solution in the field of medical imaging, and has been extensively used for ultrasound (US) compression and sparse recovery. In practice, CS offers a reduction in data sensing, transmission, and storage. Compressive sen...

    journal_title:BioMed research international

    pub_type: 杂志文章,评审

    doi:10.1155/2019/7861651

    authors: Yousufi M,Amir M,Javed U,Tayyib M,Abdullah S,Ullah H,Qureshi IM,Alimgeer KS,Akram MW,Khan KB

    更新日期:2019-11-15 00:00:00

  • Ultrasound-mediated local drug and gene delivery using nanocarriers.

    abstract::With the development of nanotechnology, nanocarriers have been increasingly used for curative drug/gene delivery. Various nanocarriers are being introduced and assessed, such as polymer nanoparticles, liposomes, and micelles. As a novel theranostic system, nanocarriers hold great promise for ultrasound molecular imagi...

    journal_title:BioMed research international

    pub_type: 杂志文章,评审

    doi:10.1155/2014/963891

    authors: Zhou QL,Chen ZY,Wang YX,Yang F,Lin Y,Liao YY

    更新日期:2014-01-01 00:00:00

  • Modic Changes and Disc Degeneration Caused by Inoculation of Propionibacterium acnes inside Intervertebral Discs of Rabbits: A Pilot Study.

    abstract:PURPOSE:To investigate whether P. acnes could induce disc degeneration and Modic changes when inoculated into the discs of rabbits. METHOD:A wild-type strain of P. acnes isolated from a patient associated with Modic change and disc degeneration was inoculated into the intervertebral discs of rabbits. Meanwhile, S. aur...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2016/9612437

    authors: Chen Z,Zheng Y,Yuan Y,Jiao Y,Xiao J,Zhou Z,Cao P

    更新日期:2016-01-01 00:00:00

  • Gene Expression Profile Signature of Aggressive Waldenström Macroglobulinemia with Chromosome 6q Deletion.

    abstract:Background:Waldenström macroglobulinemia (WM) is a rare, indolent B-cell lymphoma. Clinically, chromosome 6q deletion (6q del) including loss of the B lymphocyte-induced maturation protein 1 gene (BLIMP-1) is reported to be associated with poor prognosis. However, it remains unclear how the underlying biological mechan...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2018/6728128

    authors: Sekiguchi N,Nomoto J,Nagata A,Kiyota M,Fukuda I,Yamada K,Takezako N,Kobayashi Y

    更新日期:2018-10-04 00:00:00

  • Adipose tissue-derived stem cell secreted IGF-1 protects myoblasts from the negative effect of myostatin.

    abstract::Myostatin, a TGF-β family member, is associated with inhibition of muscle growth and differentiation and might interact with the IGF-1 signaling pathway. Since IGF-1 is secreted at a bioactive level by adipose tissue-derived mesenchymal stem cells (ASCs), these cells (ASCs) provide a therapeutic option for Duchenne Mu...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2014/129048

    authors: Gehmert S,Wenzel C,Loibl M,Brockhoff G,Huber M,Krutsch W,Nerlich M,Gosau M,Klein S,Schreml S,Prantl L,Gehmert S

    更新日期:2014-01-01 00:00:00

  • The CD40 rs1883832 Polymorphism Affects Sepsis Susceptibility and sCD40L Levels.

    abstract::Sepsis is a severe and progressive disease characterized by systemic inflammatory response syndrome (SIRS). CD40 serves as a vital link between immune response and inflammation. This study was designed to investigate the potential association between a functional single-nucleotide polymorphism (SNP) of CD40 (rs1883832...

    journal_title:BioMed research international

    pub_type: 临床试验,杂志文章

    doi:10.1155/2018/7497314

    authors: Liu ZL,Hu J,Xiao XF,Peng Y,Zhao SP,Xiao XZ,Yang MS

    更新日期:2018-03-26 00:00:00

  • Identification and Analysis of Novel Biomarkers Involved in Chromophobe Renal Cell Carcinoma by Integrated Bioinformatics Analyses.

    abstract::In renal cell carcinoma, chromophobe renal cell carcinoma (ChRCC) is a distinct subtype, whose clinical manifestations often lack specificity, and the molecular mechanisms of ChRCC tumorigenesis remain generally vague. The target of this study was to discover novel biomarkers involved in ChRCC by integrated bioinforma...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2020/2671281

    authors: Zhang W,Xu Y,Zhang J,Wu J

    更新日期:2020-02-07 00:00:00