Abstract:
:High-grade serous ovarian cancer (HGSC) exhibits extensive malignant clonal diversity with widespread but non-random patterns of disease dissemination. We investigated whether local immune microenvironment factors shape tumor progression properties at the interface of tumor-infiltrating lymphocytes (TILs) and cancer cells. Through multi-region study of 212 samples from 38 patients with whole-genome sequencing, immunohistochemistry, histologic image analysis, gene expression profiling, and T and B cell receptor sequencing, we identified three immunologic subtypes across samples and extensive within-patient diversity. Epithelial CD8+ TILs negatively associated with malignant diversity, reflecting immunological pruning of tumor clones inferred by neoantigen depletion, HLA I loss of heterozygosity, and spatial tracking between T cell and tumor clones. In addition, combinatorial prognostic effects of mutational processes and immune properties were observed, illuminating how specific genomic aberration types associate with immune response and impact survival. We conclude that within-patient spatial immune microenvironment variation shapes intraperitoneal malignant spread, provoking new evolutionary perspectives on HGSC clonal dispersion.
journal_name
Celljournal_title
Cellauthors
Zhang AW,McPherson A,Milne K,Kroeger DR,Hamilton PT,Miranda A,Funnell T,Little N,de Souza CPE,Laan S,LeDoux S,Cochrane DR,Lim JLP,Yang W,Roth A,Smith MA,Ho J,Tse K,Zeng T,Shlafman I,Mayo MR,Moore R,Failmezgerdoi
10.1016/j.cell.2018.03.073subject
Has Abstractpub_date
2018-06-14 00:00:00pages
1755-1769.e22issue
7eissn
0092-8674issn
1097-4172pii
S0092-8674(18)30445-8journal_volume
173pub_type
杂志文章相关文献
CELL文献大全abstract::Trypanosoma brucei variant surface glycoprotein (VSG) genes are activated either by duplicative (DA) transposition of the gene to a pre-activated expression site or by nonduplicative (NDA) activation of a previously silent telomeric gene. We have obtained a recombinant clone spanning the 5' barren region of the expres...
journal_title:Cell
pub_type: 杂志文章
doi:10.1016/s0092-8674(85)80113-6
更新日期:1985-08-01 00:00:00
abstract::This year's Lasker-Bloomberg Public Service Award goes to GAVI, the Vaccine Alliance, for providing sustained access to childhood vaccines around the globe, saving millions of lives, and highlighting the power of immunization to prevent disease. ...
journal_title:Cell
pub_type: 历史文章,杂志文章
doi:10.1016/j.cell.2019.08.026
更新日期:2019-09-19 00:00:00
abstract::The chromosomal distributions of five families of mouse r-protein genes (S16, L18, L19, L30 and L32/33) were studied by Southern blot analysis of DNa from a panel of mouse-hamster hybrid cells containing various complements of mouse chromosomes. Our results indicated that members of a particular family are often locat...
journal_title:Cell
pub_type: 杂志文章
doi:10.1016/0092-8674(81)90320-2
更新日期:1981-05-01 00:00:00
abstract::We present evidence that the genes encoding U3 snRNA in plants are transcribed by RNA polymerase III (pol III) and not by RNA polymerase II (pol II) as in vertebrates or lower eukaryotes. The U3 gene is the only known example of a gene transcribed by different polymerases in different organisms. It is possible to conv...
journal_title:Cell
pub_type: 杂志文章
doi:10.1016/0092-8674(91)90469-f
更新日期:1991-05-03 00:00:00
abstract::Centrosome duplication is a critical step in assembly of the bipolar mitotic spindle, but the molecular mechanisms regulating this process during the cell cycle and during animal development are poorly understood. Here, we report that the zyg-1 gene of Caenorhabditis elegans is an essential regulator of centrosome dup...
journal_title:Cell
pub_type: 杂志文章
doi:10.1016/s0092-8674(01)00338-5
更新日期:2001-05-18 00:00:00
abstract::Ocean microbial communities strongly influence the biogeochemistry, food webs, and climate of our planet. Despite recent advances in understanding their taxonomic and genomic compositions, little is known about how their transcriptomes vary globally. Here, we present a dataset of 187 metatranscriptomes and 370 metagen...
journal_title:Cell
pub_type: 杂志文章
doi:10.1016/j.cell.2019.10.014
更新日期:2019-11-14 00:00:00
abstract::The X-ray crystal structures of an anti-p24 (HIV-1) monoclonal antibody Fab fragment alone and in complexes with the epitope peptide GATPQDLNTnL (n = norleucine), an epitope-homologous peptide GATPEDLNQKLAGN, as well as two unrelated peptides GLYEWGGARITNTD and efslkGpllqwrsG (D-peptide), are presented to a maximum re...
journal_title:Cell
pub_type: 杂志文章
doi:10.1016/s0092-8674(00)80469-9
更新日期:1997-12-12 00:00:00
abstract::Activins are involved in the regulation of multiple biological events, ranging from early development to pituitary function. To characterize the cellular mechanisms involved in these processes, cDNAs coding for an activin receptor were cloned from AtT20 mouse corticotropic cells by screening COS cell transfectants for...
journal_title:Cell
pub_type: 杂志文章
doi:10.1016/0092-8674(91)90549-e
更新日期:1991-06-14 00:00:00
abstract::Despite an ever-expanding database of sequenced mammalian genomes to be mined for clues, the emergence of the unique human brain remains an evolutionary enigma. In their new study, trawl the human genome and those of other mammals in search of short conserved DNA elements that show extremely rapid evolution only in hu...
journal_title:Cell
pub_type: 杂志文章,评审
doi:10.1016/j.cell.2006.09.007
更新日期:2006-09-22 00:00:00
abstract::Thymocyte commitment to the CD4 helper versus CD8 cytotoxic lineage has not been satisfactorily established. Two models have been elaborated: one based on instruction, the other on selection. Most previous results support the instructive model, but our comparison of thymocyte differentiation in MHC class II-, class I-...
journal_title:Cell
pub_type: 杂志文章
doi:10.1016/0092-8674(93)90225-f
更新日期:1993-04-23 00:00:00
abstract::The spindle pole body (SPB) is the microtubule organizing center (MTOC) in the yeast Saccharomyces that plays a pivotal role in such diverse processes as mitosis, budding, and mating. We have used cryoelectron microscopy and image processing to study the structure of isolated diploid SPBs. We show that SPBs are presen...
journal_title:Cell
pub_type: 杂志文章
doi:10.1016/s0092-8674(00)80295-0
更新日期:1997-06-27 00:00:00
abstract::We present a strategy for generating and analyzing comprehensive genetic-interaction maps, termed E-MAPs (epistatic miniarray profiles), comprising quantitative measures of aggravating or alleviating interactions between gene pairs. Crucial to the interpretation of E-MAPs is their high-density nature made possible by ...
journal_title:Cell
pub_type: 杂志文章
doi:10.1016/j.cell.2005.08.031
更新日期:2005-11-04 00:00:00
abstract::Actomyosin retrograde flow underlies the contraction essential for cell motility. Retrograde flow in both lamellipodia and lamella is required for membrane protrusion and for force generation by coupling to cell adhesion. We report that the Rac/Cdc42-binding kinase MRCK and myosin II-related MYO18A linked by the adapt...
journal_title:Cell
pub_type: 杂志文章
doi:10.1016/j.cell.2008.09.018
更新日期:2008-10-03 00:00:00
abstract::Reactivation of human cytomegalovirus (HCMV) results in severe disease in AIDS patients and immunocompromised patients receiving blood transfusions or organ or bone marrow grafts. Although the site of HCMV latency is unknown, blood cells have been implicated as a viral reservoir. In this study, we demonstrate HCMV rea...
journal_title:Cell
pub_type: 杂志文章
doi:10.1016/s0092-8674(01)80014-3
更新日期:1997-10-03 00:00:00
abstract::The formation of morphogen gradients is essential for tissue patterning. Morphogens are released from producing cells and spread through adjacent tissue; paradoxically, however, many morphogens, including Wingless, associate tightly with the cell membrane. Here, we describe a novel cell biological mechanism that dispe...
journal_title:Cell
pub_type: 杂志文章
doi:10.1016/s0092-8674(01)00484-6
更新日期:2001-09-07 00:00:00
abstract::A long-standing question in the study of long-term memory is how a memory trace persists for years when the proteins that initiated the process turn over and disappear within days. Previously, we postulated that self-sustaining amyloidogenic oligomers of cytoplasmic polyadenylation element-binding protein (CPEB) provi...
journal_title:Cell
pub_type: 杂志文章
doi:10.1016/j.cell.2012.01.004
更新日期:2012-02-03 00:00:00
abstract::The role of S. cerevisiae YDJ1 protein (YDJ1p) in polypeptide translocation across membranes has been examined. A conditional ydj1 mutant strain (ydj1-151TS) is defective for import of several polypeptides into mitochondria and alpha factor into the endoplasmic reticulum at 37 degrees C. These defects are suppressed b...
journal_title:Cell
pub_type: 杂志文章
doi:10.1016/s0092-8674(05)80063-7
更新日期:1992-12-24 00:00:00
abstract::Compared to sperm nuclei, nuclei from adult somatic cells replicate inefficiently in frog egg extract. In this issue of Cell, Lemaitre et al. (2005) show that pre-exposure of erythrocyte nuclei to a mitotic extract removes this difference, reorganizes the chromatin into shorter loops, and allows replication at much sh...
journal_title:Cell
pub_type: 评论,杂志文章
doi:10.1016/j.cell.2005.11.008
更新日期:2005-12-02 00:00:00
abstract::The leader RNA transcript of vesicular stomatitis virus (VSV) has been immunoprecipitated from infected BHK cell extracts by anti-La specific sera from patients with systemic lupus erythematosus (SLE). This association was specific as lupus anti-sera with other specificities failed to precipitate leader RNA. The amoun...
journal_title:Cell
pub_type: 杂志文章
doi:10.1016/0092-8674(83)90541-x
更新日期:1983-10-01 00:00:00
abstract::Genetic analyses in Drosophila have demonstrated that the multipass membrane protein Smoothened (Smo) is essential for all Hedgehog signaling. We show that Smo acts epistatic to Ptc1 to mediate Shh and Ihh signaling in the early mouse embryo. Smo and Shh/Ihh compound mutants have identical phenotypes: embryos fail to ...
journal_title:Cell
pub_type: 杂志文章
doi:
更新日期:2001-06-15 00:00:00
abstract::Notch signaling is broadly used to regulate cell-fate decisions. We have identified a gene, rumi, with a temperature-sensitive Notch phenotype. At 28 degrees C-30 degrees C, rumi clones exhibit a full-blown loss of Notch signaling in all tissues tested. However, at 18 degrees C only a mild Notch phenotype is evident. ...
journal_title:Cell
pub_type: 杂志文章
doi:10.1016/j.cell.2007.12.016
更新日期:2008-01-25 00:00:00
abstract::Determining which neurite of a differentiating neuron is to become the axon is a crucial step in neuronal morphogenesis. Two groups (Barnes et al., 2007; Shelly et al., 2007) now report that axon specification in vivo is mediated by extracellular signals acting through the serine/threonine kinase LKB1. ...
journal_title:Cell
pub_type: 评论,杂志文章
doi:10.1016/j.cell.2007.04.021
更新日期:2007-05-04 00:00:00
abstract::RNA transcripts are subject to posttranscriptional gene regulation involving hundreds of RNA-binding proteins (RBPs) and microRNA-containing ribonucleoprotein complexes (miRNPs) expressed in a cell-type dependent fashion. We developed a cell-based crosslinking approach to determine at high resolution and transcriptome...
journal_title:Cell
pub_type: 杂志文章
doi:10.1016/j.cell.2010.03.009
更新日期:2010-04-02 00:00:00
abstract::A comprehensive analysis uncovered a set of yeast proteins promoting protein-based inheritance that shares many of the non-Mendelian properties of prions. Lacking any sequence or structural signatures of known prions, these proteins represent a new class of non-amyloid, protein-based epigenetic determinants that can c...
journal_title:Cell
pub_type: 杂志文章,评审
doi:10.1016/j.cell.2016.09.036
更新日期:2016-10-06 00:00:00
abstract::Mature HIV-1 particles contain conical-shaped capsids that enclose the viral RNA genome and perform essential functions in the virus life cycle. Previous structural analysis of two- and three-dimensional arrays of the capsid protein (CA) hexamer revealed three interfaces. Here, we present a cryoEM study of a tubular a...
journal_title:Cell
pub_type: 杂志文章
doi:10.1016/j.cell.2009.10.010
更新日期:2009-11-13 00:00:00
abstract::An examination of Abelson murine leukemia virus (A-MuL V)-hematopoietic cell interaction in cultures of fetal tissues reveals that A-MuLV can stimulate the formation of two different types of colonies. One type of colony is white and composed of A-MuLV-transformed lymphoid cells that can develop into established cell ...
journal_title:Cell
pub_type: 杂志文章
doi:10.1016/0092-8674(81)90035-0
更新日期:1981-10-01 00:00:00
abstract::Secretory proteins are segregated from cytosolic proteins by their translocation into the endoplasmic reticulum (ER). A modified secretory protein trapped during translocation across the ER membrane can be crosslinked to two previously identified proteins, Sec61p and BiP (Kar2p). The dependence of this cross-linking u...
journal_title:Cell
pub_type: 杂志文章
doi:10.1016/0092-8674(92)90415-9
更新日期:1992-04-17 00:00:00
abstract::Constitutive cell-autonomous immunity in metazoans predates interferon-inducible immunity and comprises primordial innate defense. Phagocytes mobilize interferon-inducible responses upon engagement of well-characterized signaling pathways by pathogen-associated molecular patterns (PAMPs). The signals controlling deplo...
journal_title:Cell
pub_type: 杂志文章
doi:10.1016/j.cell.2017.09.034
更新日期:2017-11-02 00:00:00
abstract::The activation of the tumor suppressor p53 facilitates the cellular response to genotoxic stress; however, the p53 response can only be executed if its interaction with its inhibitor Mdm2 is abolished. There have been conflicting reports on the question of whether p53 posttranslational modifications, such as phosphory...
journal_title:Cell
pub_type: 杂志文章
doi:10.1016/j.cell.2008.03.025
更新日期:2008-05-16 00:00:00
abstract::CD4 T cells potentiate the inflammatory or humoral immune response through the action of Th1 and Th2 cells, respectively. The molecular basis of the differentiation of these cells from naive T cell precursors is, however, unclear. We found that GATA-3 was selectively expressed in Th2 cells. GATA-3 is expressed at a hi...
journal_title:Cell
pub_type: 杂志文章
doi:10.1016/s0092-8674(00)80240-8
更新日期:1997-05-16 00:00:00