Viral Characteristics Associated with Maintenance of Elite Neutralizing Activity in Chronically HIV-1 Clade C-Infected Monozygotic Pediatric Twins.

Abstract:

:Broad and potent neutralizing antibodies (bnAbs) with multiple epitope specificities evolve in HIV-1-infected children. Herein, we studied two antiretroviral-naive chronically HIV-1 clade C-infected monozygotic pediatric twins, AIIMS_329 and AIIMS_330, with potent plasma bnAbs. Elite plasma neutralizing activity was observed since the initial sampling at 78 months of age in AIIMS_330 and persisted throughout, while in AIIMS_329 it was seen at 90 months of age, after which the potency decreased over time. We evaluated potential viral characteristics associated with the varied immune profiles by generating single genome-amplified pseudoviruses. The AIIMS_329 viruses generated from the 90-month time point were neutralization sensitive to bnAbs and contemporaneous plasma antibodies, while viruses from the 112-month and 117-month time points were resistant to most bnAbs and contemporaneous plasma. AIIMS_329 viruses developed resistance to plasma neutralizing antibodies (nAbs) plausibly by N160 glycan loss and V1 and V4 loop lengthening. The viruses generated from AIIMS_330 (at 90 and 117 months) showed varied susceptibility to bnAbs and autologous contemporaneous plasma antibodies, while the viruses of the 112-month time point, at which the plasma nAb specificities mapped to the V2 glycan, V3 glycan, and CD4 binding site (CD4bs), were resistant to contemporaneous plasma antibodies as well as to most bnAbs. Chimeric viruses were constructed from 90-month-time-point PG9-sensitive AIIMS_329 and AIIMS_330 viruses with swapped V1V2 regions of their respective evolved viruses (at 112 and 117 months), which led to higher resistance to neutralization by PG9 and autologous plasma antibodies. We observed the evolution of a viral pool in the AIIMS_330 donor comprising plasma antibody neutralization-sensitive or -resistant diverse autologous viruses that may have contributed to the development and maintenance of elite neutralizing activity.IMPORTANCE Herein, we report the longitudinal development of bnAbs in a pair of chronically HIV-1 clade C-infected monozygotic pediatric twins, AIIMS_329 and AIIMS_330, who acquired the infection by vertical transmission. The plasma from both donors, sharing a similar genetic makeup and infecting virus, showed the evolvement of bnAbs targeting common epitopes in the V2 and V3 regions of the envelope, suggesting that bnAb development in these twins may perhaps be determined by specific sequences in the shared virus that can guide the development of immunogens aimed at eliciting V2 and V3 bNAbs. Characterization of the neutralization-sensitive and -resistant viruses coevolving with bNAbs in the contemporaneous AIIMS_330 plasma provides information toward understanding the viral alterations that may have contributed to the development of resistance to bnAbs. Further longitudinal studies in more monozygotic and dizygotic twin pairs will help in delineating the role of host and viral factors that may contribute to the development of bnAbs.

journal_name

J Virol

journal_title

Journal of virology

authors

Mishra N,Makhdoomi MA,Sharma S,Kumar S,Dobhal A,Kumar D,Chawla H,Singh R,Kanga U,Das BK,Lodha R,Kabra SK,Luthra K

doi

10.1128/JVI.00654-19

subject

Has Abstract

pub_date

2019-08-13 00:00:00

issue

17

eissn

0022-538X

issn

1098-5514

pii

JVI.00654-19

journal_volume

93

pub_type

杂志文章
  • Implication of a central cysteine residue and the HHCC domain of Moloney murine leukemia virus integrase protein in functional multimerization.

    abstract::Moloney murine leukemia virus (M-MuLV) IN-IN protein interactions important for catalysis of strand transfer and unimolecular and bimolecular disintegration reactions were investigated by using a panel of chemically modified M-MuLV IN proteins. Functional complementation of an HHCC-deleted protein (Ndelta105) by an in...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.72.2.1691-1698.1998

    authors: Donzella GA,Leon O,Roth MJ

    更新日期:1998-02-01 00:00:00

  • Herpes Simplex Virus Entry by a Nonconventional Endocytic Pathway.

    abstract::Herpes simplex virus 1 (HSV-1) causes significant morbidity and mortality in humans worldwide. HSV-1 enters epithelial cells via an endocytosis mechanism that is low-pH dependent. However, the precise intracellular pathway has not been identified, including the compartment where fusion occurs. In this study, we utiliz...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01910-20

    authors: Tebaldi G,Pritchard SM,Nicola AV

    更新日期:2020-11-23 00:00:00

  • Herpes simplex virus infection stabilizes cellular IEX-1 mRNA.

    abstract::Herpes simplex virus (HSV) virion host shutoff protein (vhs) destabilizes cellular and viral mRNAs. Previous work from several laboratories has indicated that vhs accelerates the turnover of most host mRNAs and provided evidence that at least some of these are degraded via endonucleolytic cleavage near regions of tran...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.79.7.4090-4098.2005

    authors: Hsu WL,Saffran HA,Smiley JR

    更新日期:2005-04-01 00:00:00

  • Latent murine cytomegalovirus DNA in splenic stromal cells of mice.

    abstract::Latency is an integral feature of the pathogenesis of cytomegalovirus infection and disease. Using in situ hybridization, we detected viral DNA in the splenic stroma of mice with acute murine cytomegalovirus (MCMV) infection but could not detect latent infection. By using enzymatic amplification of a 700-bp region of ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.65.6.3330-3334.1991

    authors: Pomeroy C,Hilleren PJ,Jordan MC

    更新日期:1991-06-01 00:00:00

  • Inhibition of interjacent ribonucleic acid (26S) synthesis in cells infected by Sindbis virus.

    abstract::The interrelationship of viral ribonucleic acid (RNA) and protein synthesis in cells infected by Sindbis virus was investigated. When cultures were treated with puromycin early in the course of infection, the synthesis of interjacent RNA (26S) was preferentially inhibited. A similar result was obtained by shifting cel...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.4.2.117-122.1969

    authors: Scheele CM,Pfefferkorn ER

    更新日期:1969-08-01 00:00:00

  • Diversity of T-cell receptors in virus-specific cytotoxic T lymphocytes recognizing three distinct viral epitopes restricted by a single major histocompatibility complex molecule.

    abstract::Cytotoxic T lymphocytes (CTL) recognize virus peptide fragments complexed with class I major histocompatibility complex (MHC) molecules on the surface of virus-infected cells. Recognition is mediated by a membrane-bound T-cell receptor (TCR) composed of alpha and beta chains. Studies of the CTL response to lymphocytic...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.66.4.2527-2531.1992

    authors: Yanagi Y,Tishon A,Lewicki H,Cubitt BA,Oldstone MB

    更新日期:1992-04-01 00:00:00

  • Analysis of Moloney murine leukemia virus revertants mutated at the gag-pol junction.

    abstract::Among Moloney murine leukemia viruses (Mo-MuLVs) having stop codons other than UAG at the gag-pol junction, Mo-MuLV with UAA, but not with UGA, had a replication disadvantage. Mo-MuLV with a glutamine codon (CAG) at the junction did not replicate. A revertant of this virus consisted of the original virus and a virus w...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.65.11.6376-6379.1991

    authors: Odawara T,Yoshikura H,Ohshima M,Tanaka T,Jones DS,Nemoto F,Kuchino Y,Iwamoto A

    更新日期:1991-11-01 00:00:00

  • Isolation and purification of the envelope proteins of Newcastle disease virus.

    abstract::A procedure has been developed for the isolation of Newcastle disease virus (NDV) envelope proteins. The two surface glycoproteins and the non-glycosylated membrane protein were solubilized with 2% Triton X-100 and 1 m KCl. Removal of the KCl by dialysis yielded by precipitation a pure preparation of the non-glycosyla...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.11.2.263-271.1973

    authors: Scheid A,Choppin PW

    更新日期:1973-02-01 00:00:00

  • Superinfection exclusion in cells infected with hepatitis C virus.

    abstract::Superinfection exclusion is the ability of an established virus infection to interfere with infection by a second virus. In this study, we found that Huh-7.5 cells acutely infected with hepatitis C virus (HCV) genotype 2a (chimeric strain J6/JFH) and cells harboring HCV genotype 1a, 1b, or 2a full-length or subgenomic...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01748-06

    authors: Tscherne DM,Evans MJ,von Hahn T,Jones CT,Stamataki Z,McKeating JA,Lindenbach BD,Rice CM

    更新日期:2007-04-01 00:00:00

  • Vaccination of pigs against swine influenza viruses by using an NS1-truncated modified live-virus vaccine.

    abstract::Swine influenza viruses (SIV) naturally infect pigs and can be transmitted to humans. In the pig, genetic reassortment to create novel influenza subtypes by mixing avian, human, and swine influenza viruses is possible. An SIV vaccine inducing cross-protective immunity between different subtypes and strains circulating...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00787-06

    authors: Richt JA,Lekcharoensuk P,Lager KM,Vincent AL,Loiacono CM,Janke BH,Wu WH,Yoon KJ,Webby RJ,Solórzano A,García-Sastre A

    更新日期:2006-11-01 00:00:00

  • Interleukin-15 and natural killer and NKT cells play a critical role in innate protection against genital herpes simplex virus type 2 infection.

    abstract::Interleukin-15 (IL-15), natural killer (NK) cells, and NK T (NKT) cells, components of the innate immune system, are known to contribute to defense against pathogens, including viruses. Here we report that IL-15(-/-) (NK(-) and NKT(-/+)) mice and RAG-2(-/-)/gamma(c)(-/-) (NK(-) and NKT(-)) mice that lack all lymphoid ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.77.18.10168-10171.2003

    authors: Ashkar AA,Rosenthal KL

    更新日期:2003-09-01 00:00:00

  • Temporal distribution of transmissible mink encephalopathy virus in mink inoculated subcutaneously.

    abstract::Information was sought on the temporal distribution of transmissible mink encephalopathy virus in royal pastel mink inoculated subcutaneously with 10(3.0) 50% intracerebral lethal doses of the Idaho strain. As determined by intracerebral assay in mink, extremely little replication of the virus occurred during the prec...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.61.10.3235-3240.1987

    authors: Hadlow WJ,Race RE,Kennedy RC

    更新日期:1987-10-01 00:00:00

  • Particle size determinants in the human immunodeficiency virus type 1 Gag protein.

    abstract::The retroviral Gag protein plays the central role in the assembly process and can form membrane-enclosed, virus-like particles in the absence of any other viral products. These particles are similar to authentic virions in density and size. Three small domains of the human immunodeficiency virus type 1 (HIV-1) Gag pro...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.72.6.4667-4677.1998

    authors: Garnier L,Ratner L,Rovinski B,Cao SX,Wills JW

    更新日期:1998-06-01 00:00:00

  • Regulation of human cytomegalovirus US3 gene transcription by a cis-repressive sequence.

    abstract::Regulation of immediate-early gene expression in human cytomegalovirus is subject to complex controls. The major immediate-early (mIE) gene is regulated by both positive and negative regulatory signals, including autoregulation mediated by a cis-repressive sequence. A second immediate-early gene, the US3 gene, is tran...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.69.9.5362-5367.1995

    authors: Biegalke BJ

    更新日期:1995-09-01 00:00:00

  • Simian Immunodeficiency Virus Infects Functionally Polarized Memory CD4 T Cells Equivalently In Vivo.

    abstract::Among the numerous immunological abnormalities observed in chronically human immunodeficiency virus (HIV)-infected individuals, perturbations in memory CD4 T cells are thought to contribute specifically to disease pathogenesis. Among these, functional imbalances in the frequencies of T regulatory cells (Tregs) and int...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.02163-18

    authors: Lai SH,Starke CE,Flynn JK,Vinton CL,Ortiz AM,Mudd JC,Brenchley JM

    更新日期:2019-04-17 00:00:00

  • Characterization of herpes simplex virus 2 temperature-sensitive mutants whose lesions map in or near the coding sequences for the major DNA-binding protein.

    abstract::By marker rescue with cloned herpes simplex virus 2 DNA fragments, we have mapped the temperature-sensitive mutations of a series of herpes simplex virus 2 mutants to a region of the herpes simplex virus 2 genome that lies within or near the coding sequences for the major DNA-binding protein, ICP8. In cells infected w...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.45.1.332-342.1983

    authors: Spang AE,Godowski PJ,Knipe DM

    更新日期:1983-01-01 00:00:00

  • Linked tumor-selective virus replication and transgene expression from E3-containing oncolytic adenoviruses.

    abstract::Historically, the adenoviral E3 region was found to be nonessential for viral replication in vitro. In addition, adenoviruses whose genome was more than approximately 105% the size of the native genome were inefficiently packaged. These profound observations were used experimentally to insert transgenes into the adeno...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.79.9.5455-5465.2005

    authors: Zhu M,Bristol JA,Xie Y,Mina M,Ji H,Forry-Schaudies S,Ennist DL

    更新日期:2005-05-01 00:00:00

  • Deer Prion Proteins Modulate the Emergence and Adaptation of Chronic Wasting Disease Strains.

    abstract:UNLABELLED:Transmission of chronic wasting disease (CWD) between cervids is influenced by the primary structure of the host cellular prion protein (PrP(C)). In white-tailed deer, PRNP alleles encode the polymorphisms Q95 G96 (wild type [wt]), Q95 S96 (referred to as the S96 allele), and H95 G96 (referred to as the H95 ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.02010-15

    authors: Duque Velásquez C,Kim C,Herbst A,Daude N,Garza MC,Wille H,Aiken J,McKenzie D

    更新日期:2015-12-01 00:00:00

  • Genetic diversity of simian immunodeficiency virus encoding HIV-1 reverse transcriptase persists in macaques despite antiretroviral therapy.

    abstract::The impact of antiretroviral therapy (ART) on the genetics of simian immunodeficiency virus (SIV) or human immunodeficiency virus (HIV) populations has been incompletely characterized. We analyzed SIV genetic variation before, during, and after ART in a macaque model. Six pigtail macaques were infected with an SIV/HIV...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01701-10

    authors: Kearney M,Spindler J,Shao W,Maldarelli F,Palmer S,Hu SL,Lifson JD,KewalRamani VN,Mellors JW,Coffin JM,Ambrose Z

    更新日期:2011-01-01 00:00:00

  • Nucleocytoplasmic traffic disorder induced by cardioviruses.

    abstract::Some picornaviruses, for example, poliovirus, increase bidirectional permeability of the nuclear envelope and suppress active nucleocytoplasmic transport. These activities require the viral protease 2A(pro). Here, we studied nucleocytoplasmic traffic in cells infected with encephalomyocarditis virus (EMCV; a cardiovir...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.80.6.2705-2717.2006

    authors: Lidsky PV,Hato S,Bardina MV,Aminev AG,Palmenberg AC,Sheval EV,Polyakov VY,van Kuppeveld FJ,Agol VI

    更新日期:2006-03-01 00:00:00

  • Analysis of the Epstein-Barr virus origin of plasmid replication (oriP) reveals an area of nucleosome sparing that spans the 3' dyad.

    abstract::The Epstein-Barr virus oriP, when examined with the use of in vitro nucleosome reconstitution, was found to exhibit a partial sparing of nucleosome assembly within the 3' dyad. Analysis of the homologous region containing the origin of replication of herpesvirus papio disclosed that sparing of nucleosome assembly was ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.63.12.5505-5508.1989

    authors: Sexton CJ,Pagano JS

    更新日期:1989-12-01 00:00:00

  • Altered cytokine expression in T lymphocytes from human immunodeficiency virus Tat transgenic mice.

    abstract::Examination of the interaction between human immunodeficiency virus (HIV) regulatory gene products and the host immune system is fundamental to understanding the pathogenesis of HIV and could reveal possible targets for therapeutic intervention in the treatment of AIDS. The HIV Tat gene is a potential candidate for th...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.69.12.7622-7629.1995

    authors: Brady HJ,Abraham DJ,Pennington DJ,Miles CG,Jenkins S,Dzierzak EA

    更新日期:1995-12-01 00:00:00

  • Retrovirus-induced murine acquired immunodeficiency syndrome: natural history of infection and differing susceptibility of inbred mouse strains.

    abstract::C57BL mice (Fv-1b) develop a severe immunodeficiency disease following inoculation as adults with LP-BM5 murine leukemia virus (MuLV), a derivative of Duplan-Laterjet virus which contains B-tropic ecotropic and mink cell focus-inducing MuLVs and a putative defective genome which may be the proximal cause of disease. T...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.63.3.1223-1231.1989

    authors: Hartley JW,Fredrickson TN,Yetter RA,Makino M,Morse HC 3rd

    更新日期:1989-03-01 00:00:00

  • Tyrosine 132 phosphorylation of influenza A virus M1 protein is crucial for virus replication by controlling the nuclear import of M1.

    abstract::Phosphorylation of viral proteins plays important roles in the influenza A virus (IAV) life cycle. By using mass spectrometry, we identified tyrosine 132 (Y132) as a phosphorylation site of the matrix protein (M1) of the influenza virus A/WSN/1933(H1N1). Phosphorylation at this site is essential to the process of viru...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.03024-12

    authors: Wang S,Zhao Z,Bi Y,Sun L,Liu X,Liu W

    更新日期:2013-06-01 00:00:00

  • Isolation and characterization of a temperate bacteriophage specific for Rhodopseudomonas spheroides.

    abstract::The isolation of a temperature phage specific for the photosynthetic bacterium Rhodopseudomonas spheroides is reported. This phage, Rphi-1, establishes a state of lysogeny and can be induced from the prophage state by exposure to mitomycin C or UV irradiation. Mutants of Rphi-1 which grow on a standard laboratory stra...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.14.5.1288-1292.1974

    authors: Mural RJ,Friedman DI

    更新日期:1974-11-01 00:00:00

  • Evidence for a relationship between equine abortion (herpes) virus deoxyribonucleic acid synthesis and the S phase of the KB cell mitotic cycle.

    abstract::Autoradiographic analyses of deoxyribonucleic acid (DNA) synthesis in randomly growing KB cell cultures infected with equine abortion virus (EAV) suggested that viral DNA synthesis was initiated only at times that coincided with the entry of noninfected control cells into the S phase of the cell cycle. Synchronized cu...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.7.6.736-748.1971

    authors: Lawrence WC

    更新日期:1971-06-01 00:00:00

  • DNA polymerase activities in growing cells infected with simian virus 40.

    abstract::Growing CV1 cells were infected with simian virus 40 (SV40), and the levels of DNA polymerases-alpha, -beta, and -gamma were analyzed in the cytoplasm, nuclear Triton wash, and nucleus. In the cytoplasmic fraction, the amount of alpha-, beta-, or gamma-polymerase remained unaltered after SV40 infection. The activity o...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.23.1.117-125.1977

    authors: Méchali M,Girard M,de Recondo AM

    更新日期:1977-07-01 00:00:00

  • Epstein-Barr virus transcription in nasopharyngeal carcinoma.

    abstract::Sequences which encode Epstein-Barr virus (EBV) RNA in nasopharyngeal carcinoma (NPC) tissue have been identified. We utilized human biopsy material directly as well as NPC grown in nude mice. Total RNA was extracted from the tumor material and separated into polyadenylated and nonpolyadenylated fractions by oligodeox...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.48.3.580-590.1983

    authors: Raab-Traub N,Hood R,Yang CS,Henry B 2nd,Pagano JS

    更新日期:1983-12-01 00:00:00

  • TRIM protein-mediated regulation of inflammatory and innate immune signaling and its association with antiretroviral activity.

    abstract::Members of the tripartite interaction motif (TRIM) family of E3 ligases are emerging as critical regulators of innate immunity. To identify new regulators, we carried out a screen of 43 human TRIM proteins for the ability to activate NF-κB, AP-1, and interferon, hallmarks of many innate immune signaling pathways. We i...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01804-12

    authors: Uchil PD,Hinz A,Siegel S,Coenen-Stass A,Pertel T,Luban J,Mothes W

    更新日期:2013-01-01 00:00:00

  • The GC box and TATA transcription control elements in the P38 promoter of the minute virus of mice are necessary and sufficient for transactivation by the nonstructural protein NS1.

    abstract::To further define the transcriptional regulation of the P38 promoter in the minute virus of mice (MVM) genome, we constructed a series of internal deletion and linker scanning mutations. The mutant P38 constructs were assayed for transcriptional activity in vitro by primer extension analysis with nuclear extracts from...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.66.6.3776-3783.1992

    authors: Ahn JK,Pitluk ZW,Ward DC

    更新日期:1992-06-01 00:00:00