Profiling Aglycon-Recognizing Sites of UDP-glucose:glycoprotein Glucosyltransferase by Means of Squarate-Mediated Labeling.

Abstract:

:Because of its ability to selectively glucosylate misfolded glycoproteins, UDP-glucose:glycoprotein glucosyltransferase (UGGT) functions as a folding sensor in the glycoprotein quality control system in the endoplasmic reticulum (ER). The unique property of UGGT derives from its ability to transfer a glucose residue to N-glycan moieties of incompletely folded glycoproteins. We have previously discovered nonproteinic synthetic substrates of this enzyme, allowing us to conduct its high-sensitivity assay in a quantitative manner. In this study, we aimed to conduct site-selective affinity labeling of UGGT using a functionalized oligosaccharide probe to identify domain(s) responsible for recognition of the aglycon moiety of substrates. To this end, a probe 1 was designed to selectively label nucleophilic amino acid residues in the proximity of the canonical aglycon-recognizing site of human UGGT1 (HUGT1) via squaramide formation. As expected, probe 1 was able to label HUGT1 in the presence of UDP. Analysis by nano-LC-ESI/MS(n) identified a unique lysine residue (K1424) that was modified by 1. Kyte-Doolittle analysis as well as homology modeling revealed a cluster of hydrophobic amino acids that may be functional in the folding sensing mechanism of HUGT1.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Ohara K,Takeda Y,Daikoku S,Hachisu M,Seko A,Ito Y

doi

10.1021/acs.biochem.5b00785

subject

Has Abstract

pub_date

2015-08-11 00:00:00

pages

4909-17

issue

31

eissn

0006-2960

issn

1520-4995

journal_volume

54

pub_type

杂志文章
  • Relevance of partially structured states in the non-classical secretion of acidic fibroblast growth factor.

    abstract::Acidic fibroblast growth factor (aFGF) is a signal peptide-less protein that is secreted into the extracellular compartment as part of a multiprotein release complex, consisting of aFGF, S100A13 (a calcium binding protein), and a 40 kDa (p40) form of synaptotagmin (Syt1), a protein that participates in the docking of ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi7002586

    authors: Rajalingam D,Graziani I,Prudovsky I,Yu C,Kumar TK

    更新日期:2007-08-14 00:00:00

  • Tryptophan B27 in the relaxin-like factor (RLF) is crucial for RLF receptor-binding.

    abstract::The relaxin-like factor (RLF) is a circulating hormone that is synthesized in the gonads of mammals and released into the bloodstream. The distribution of its receptor and a trace of cross-reactivity to relaxin receptors implied that this relatively new factor is more relaxin- than insulin-like. The chemical synthesis...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi982687u

    authors: Büllesbach EE,Schwabe C

    更新日期:1999-03-09 00:00:00

  • Hydrophobic core of the steroidogenic acute regulatory protein for cholesterol transport.

    abstract::The steroidogenic acute regulatory protein (StAR), the first family member of START (StAR-related lipid transport) proteins, plays an essential role by facilitating the movement of cholesterol from the outer to inner mitochondrial membrane. Wild-type and mutant StAR binds cholesterol with similar intensity, but only w...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi801514e

    authors: Bose HS,Whittal RM,Bose M,Debnath D

    更新日期:2009-02-17 00:00:00

  • Evidence for a slow tertiary relaxation in the reaction of tert-butyl isocyanide with horseradish peroxidase.

    abstract::The kinetics of tert-butyl isocyanide binding to the heme protein horseradish peroxidase (HRP) at 22 degrees C was examined on all time scales, from minutes to picoseconds, in aqueous borate buffer at pH 9.08. Unlike myoglobin (Mb) or hemoglobin, HRP shows two bimolecular ligand binding processes. For comparison, bind...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9518149

    authors: Bandyopadhyay D,Walda KN,Grogan TM,Magde D,Traylor TG,Sharma VS

    更新日期:1996-02-06 00:00:00

  • Medium-Throughput Screen of Microbially Produced Serotonin via a G-Protein-Coupled Receptor-Based Sensor.

    abstract::Chemical biosensors, for which chemical detection triggers a fluorescent signal, have the potential to accelerate the screening of noncolorimetric chemicals produced by microbes, enabling the high-throughput engineering of enzymes and metabolic pathways. Here, we engineer a G-protein-coupled receptor (GPCR)-based sens...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.7b00605

    authors: Ehrenworth AM,Claiborne T,Peralta-Yahya P

    更新日期:2017-10-17 00:00:00

  • Integrated function of a kinetic proofreading mechanism: steady-state analysis testing internal consistency of data obtained in vivo and in vitro and predicting parameter values.

    abstract::Experimental measurements of the kinetic mechanism involving isoleucyl-tRNA synthetase proofreading valyl-tRNAIle in Escherichia coli have been incorporated into the conventional Michaelis-Menten model for this system. The model was subjected to a detailed mathematical analysis in the steady state. The results of this...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00303a019

    authors: Okamoto M,Savageau MA

    更新日期:1984-04-10 00:00:00

  • Uptake of cesium ions by human erythrocytes and perfused rat heart: a cesium-133 NMR study.

    abstract::Cesium-133 NMR studies have been carried out on suspended human erythrocytes and on perfused rat hearts in media containing CsCl. The resulting spectra exhibit two sharp resonances, arising from intra- and extracellular Cs+, separated in chemical shift by 1.0-1.4 ppm. Thus, intra- and extracellular resonances are easi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00410a003

    authors: Davis DG,Murphy E,London RE

    更新日期:1988-05-17 00:00:00

  • Stimulation of iron(II) bleomycin activity by phosphate-containing compounds.

    abstract::Orthophosphate and phosphate derivatives including pyrophosphate, hexametaphosphate, ATP, ADP, and inositol hexaphosphate enhance the extent of DNA degradation by iron(II) bleomycin. These phosphate-containing compounds increase both the release of free nucleic base and that of base propenals which are DNA cleavage pr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00335a034

    authors: Burger RM,Horwitz SB,Peisach J

    更新日期:1985-07-02 00:00:00

  • The limits of promiscuity: isoform-specific dimerization of filamins.

    abstract::Filamins are a family of actin cross-linking proteins that are primarily localized in the cortical cytoplasm of all mammalian cells. Until now, three major isoforms (filamins a, b, and c) have been identified, that were shown to be differentially expressed and/or localized in different tissues. An amino-terminal doubl...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi026501+

    authors: Himmel M,Van Der Ven PF,Stöcklein W,Fürst DO

    更新日期:2003-01-21 00:00:00

  • Adenosine 5'-(gamma-thiotriphosphate): an ATP analog that should be used with caution in muscle contraction studies.

    abstract::The slowly hydrolyzed ATP analog adenosine 5'-(gamma-thiotriphosphate) (ATP gamma S) has been used in many studies of the muscle motor protein myosin in order to form a stable "weak binding" state analogous to the actin-S1-ATP complex However, the results from studies using ATP gamma S do not always agree with the res...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00049a018

    authors: Resetar AM,Chalovich JM

    更新日期:1995-12-12 00:00:00

  • Substrate-induced inactivation of a crippled beta-glucosidase mutant: identification of the labeled amino acid and mutagenic analysis of its role.

    abstract::The beta-glucosidase from Agrobacterium sp. catalyzes the hydrolysis of beta-glucosides via a covalent alpha-D-glucopyranosyl-enzyme intermediate involving Glu358. Hydrolysis of 2,4-dinitrophenyl beta-D-glucopyranoside by the low activity Glu358Asp mutant of Agrobacterium beta-glucosidase is accompanied by time-depend...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00044a033

    authors: Gebler JC,Trimbur DE,Warren AJ,Aebersold R,Namchuk M,Withers SG

    更新日期:1995-11-07 00:00:00

  • Stabilizing and Understanding a Miniprotein by Rational Redesign.

    abstract::Miniproteins reduce the complexity of the protein-folding problem allowing systematic studies of contributions to protein folding and stabilization. Here, we describe the rational redesign of a miniprotein, PPα, comprising a polyproline II helix, a loop, and an α helix. The redesign provides a de novo framework for in...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.9b00067

    authors: Porter Goff KL,Nicol D,Williams C,Crump MP,Zieleniewski F,Samphire JL,Baker EG,Woolfson DN

    更新日期:2019-07-16 00:00:00

  • Nuclear magnetic resonance study of the Schiff base in bacteriorhodopsin: counterion effects on the 15N shift anisotropy.

    abstract::High-resolution, solid-state 15N NMR has been used to study the chemical shift anisotropies of the Schiff bases in bacteriorhodopsin (bR) and in an extensive series of model compounds. Using slow-spinning techniques, we are able to obtain sufficient rotational sideband intensity to determine the full 15N chemical shif...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00434a033

    authors: de Groot HJ,Harbison GS,Herzfeld J,Griffin RG

    更新日期:1989-04-18 00:00:00

  • Chromium(III) modification of the first metal binding site of phosphoenolpyruvate carboxykinase.

    abstract::Chicken liver phosphoenolpyruvate carboxykinase (PEPCK) is activated by Cr2+ as the sole activator under anaerobic conditions. PEPCK was modified with Cr3+, starting with either Cr2+ or Cr3+. Cr3+ has the distinct advantage of being a paramagnetic cation that could serve as a paramagnetic probe. Activators Mn2+, Mg2+,...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9807299

    authors: Hlavaty JJ,Nowak T

    更新日期:1998-06-02 00:00:00

  • Biochemical characterization of the HpxO enzyme from Klebsiella pneumoniae, a novel FAD-dependent urate oxidase.

    abstract::The HpxO enzyme from Klebsiella pneumoniae was recently proposed, on the basis of genetic studies, to catalyze the hydroxylation of uric acid to 5-hydroxyisourate as part of the purine catabolic pathway. Its primary sequence suggests that the HpxO catalytic activity depends on a flavin cofactor (FAD), contrasting with...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi900160b

    authors: O'Leary SE,Hicks KA,Ealick SE,Begley TP

    更新日期:2009-04-14 00:00:00

  • Nucleosome Histone Tail Conformation and Dynamics: Impacts of Lysine Acetylation and a Nearby Minor Groove Benzo[a]pyrene-Derived Lesion.

    abstract::Histone tails in nucleosomes play critical roles in regulation of many biological processes, including chromatin compaction, transcription, and DNA repair. Moreover, post-translational modifications, notably lysine acetylation, are crucial to these functions. While the tails have been intensively studied, how the stru...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.6b01208

    authors: Fu I,Cai Y,Geacintov NE,Zhang Y,Broyde S

    更新日期:2017-04-11 00:00:00

  • Rapid laser flash photoaffinity labeling of binding sites for a noncompetitive inhibitor of the acetylcholine receptor.

    abstract::Photoaffinity labeling of the nicotinic acetylcholine receptor from Torpedo marmorata electric tissue was performed in the presence of cholinergic effectors in the millisecond to second time range by a combination of a stopped-flow apparatus and a high-energy pulse laser. The label applied was [3H]triphenylmethylphosp...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00307a029

    authors: Muhn P,Fahr A,Hucho F

    更新日期:1984-06-05 00:00:00

  • Surface-enhanced resonance raman scattering spectroscopy of bacterial photosynthetic membranes: orientation of the carotenoids of Rhodobacter sphaeroides 2.4.1.

    abstract::Surface-enhanced resonance Raman scattering (SERRS) spectra were obtained from carotenoids, in the all-trans configuration, located on the antenna complexes of Rhodobacter sphaeroides 2.4.1 membranes. Since resonance Raman (RR) spectra are barely detectable at the concentration that SERRS signals saturate, SERRS repre...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00455a017

    authors: Picorel R,Lu T,Holt RE,Cotton TM,Seibert M

    更新日期:1990-01-23 00:00:00

  • Ionic-strength-dependent effects in protein folding: analysis of rate equilibrium free-energy relationships and their interpretation.

    abstract::The traditional approach to studying protein folding involves applying a perturbation, usually denaturant or mutation, and determining the effect upon the free energy of folding, DeltaG0, and the activation free energy, DeltaG(not equal). Data collected as a function of the perturbation can be used to construct rate e...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi701645g

    authors: Song B,Cho JH,Raleigh DP

    更新日期:2007-12-11 00:00:00

  • On the mechanism of activation of the BLUF domain of AppA.

    abstract::AppA, a transcriptional antirepressor, regulates the steady expression of photosynthesis genes in Rhodobacter sphaeroides in response to high-intensity blue light and to redox signals. Its blue-light sensing is mediated by an N-terminal BLUF domain, a member of a novel flavin fold. The photocycle of this domain (AppA(...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi051367p

    authors: Laan W,Gauden M,Yeremenko S,van Grondelle R,Kennis JT,Hellingwerf KJ

    更新日期:2006-01-10 00:00:00

  • Binding of islet amyloid polypeptide to supported lipid bilayers and amyloid aggregation at the membranes.

    abstract::Amyloid deposition of human islet amyloid polypeptide (hIAPP) in the islets of Langerhans is closely associated with the pathogenesis of type II diabetes mellitus. Despite substantial evidence linking amyloidogenic hIAPP to loss of β-cell mass and decreased pancreatic function, the molecular mechanism of hIAPP cytotox...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi300542g

    authors: Sasahara K,Morigaki K,Okazaki T,Hamada D

    更新日期:2012-09-04 00:00:00

  • Bleomycin-DNA interactions: fluorescence and proton magnetic resonance studies.

    abstract::The interaction of bleomycin A2 with DNA has been examined by fluorescence spectroscopy and proton magnetic resonance techniques. Fluorescence bands observed at 353 and 405 nm in the spectrum of bleomycin were assigned to the bithiazole and 4-aminopyrimidine rings, respectively. Quenching of bithiazole fluorescence by...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00635a021

    authors: Chien M,Grollman AP,Horwitz SB

    更新日期:1977-08-09 00:00:00

  • A solution NMR investigation into the early events of amelogenin nanosphere self-assembly initiated with sodium chloride or calcium chloride.

    abstract::Using solution-state NMR spectroscopy, new insights into the early events governing amelogenin supramolecular self-assembly have been identified using sodium chloride and calcium chloride to trigger the association. Two-dimensional 1H-15N HSQC spectra were recorded for 15N- and 13C-labeled murine amelogenin as a funct...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi8018288

    authors: Buchko GW,Tarasevich BJ,Bekhazi J,Snead ML,Shaw WJ

    更新日期:2008-12-16 00:00:00

  • The BARD1 C-terminal domain structure and interactions with polyadenylation factor CstF-50.

    abstract::The BARD1 N-terminal RING domain binds BRCA1 while the BARD1 C-terminal ankyrin and tandem BRCT repeat domains bind CstF-50 to modulate mRNA processing and RNAP II stability in response to DNA damage. Here we characterize the BARD1 structural biochemistry responsible for CstF-50 binding. The crystal structure of the B...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi801115g

    authors: Edwards RA,Lee MS,Tsutakawa SE,Williams RS,Nazeer I,Kleiman FE,Tainer JA,Glover JN

    更新日期:2008-11-04 00:00:00

  • Molecular recognition in cytochrome P-450: mechanism for the control of uncoupling reactions.

    abstract::The pathway for utilization of pyridine nucleotide derived reducing equivalents in the cytochrome P-450 monooxygenase systems has three major branch points. The first is a partitioning between autoxidation of a ferrous, oxygenated heme adduct and input of the second reducing equivalent required for monooxygenase stoic...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00094a009

    authors: Loida PJ,Sligar SG

    更新日期:1993-11-02 00:00:00

  • Hydrogen-deuterium substitution and solvent effects on the nitrogen-15 nuclear magnetic resonance of gramicidin S: evaluation of secondary structure.

    abstract::Complete assignments of nitrogen-15 resonances of gramicidin S have been made in dimethyl sulfoxide, trifluoroethanol, and in a solvent mixture of dimethyl sulfoxide (50%) and methanol (50%). The assignments are achieved by utilizing the secondary structure of gramicidin S, by comparing the nitrogen-15 spectrum of gra...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00606a005

    authors: Khaled MA,Urry DW,Sugano H,Miyoshi M,Izumiya N

    更新日期:1978-06-27 00:00:00

  • GTP-stimulated phosphorylation of P-glycoprotein in transporting vesicles from KB-V1 multidrug resistant cells.

    abstract::We have previously shown that GTP can replace ATP as an energy source to support vinblastine transport by the multidrug transporter P-glycoprotein (Pgp) in plasma membrane vesicles isolated from the multidrug resistant cell line KB-V1 [Lelong et al. (1992) FEBS Lett. 304, 256-260]. Like [gamma-32P]ATP, [gamma-32P]GTP ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00196a009

    authors: Lelong IH,Cardarelli CO,Gottesman MM,Pastan I

    更新日期:1994-08-02 00:00:00

  • Molecular design of new inhibitors of peroxidase activity of cytochrome c/cardiolipin complexes: fluorescent oxadiazole-derivatized cardiolipin.

    abstract::Interaction of a mitochondria-specific anionic phospholipid, cardiolipin (CL), with an intermembrane protein, cytochrome c (cyt c), yields a peroxidase complex. During apoptosis, the complex induces accumulation of CL oxidation products that are essential for detachment of cyt c from the mitochondrial membrane, induct...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi801507s

    authors: Borisenko GG,Kapralov AA,Tyurin VA,Maeda A,Stoyanovsky DA,Kagan VE

    更新日期:2008-12-23 00:00:00

  • hnRNP A2 selectively binds the cytoplasmic transport sequence of myelin basic protein mRNA.

    abstract::Segregation of mRNAs in the cytoplasm of polar cells has been demonstrated for proteins involved in Xenopus and Drosophila oogenesis, and for some proteins in somatic cells. It is assumed that vectorial transport of the messages is generally responsible for this localization. The mRNA encoding the basic protein of cen...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9800247

    authors: Hoek KS,Kidd GJ,Carson JH,Smith R

    更新日期:1998-05-12 00:00:00

  • Structure of the human pancreatic cholesterol esterase gene.

    abstract::The gene for human pancreatic cholesterol esterase consists of 11 exons and 10 introns and is 9.2 kb in length. The last and longest exon (841 nucleotides) is unique to the human gene. Functional amino acids are encoded on separate exons. The leader sequence is encoded by a single exon which carries two additional N-t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00141a017

    authors: Kumar BV,Aleman-Gomez JA,Colwell N,Lopez-Candales A,Bosner MS,Spilburg CA,Lowe M,Lange LG

    更新日期:1992-07-07 00:00:00