Abstract:
Objective:To explore multiscale integrated analysis methods in identifying key regulators of esophageal cancer (ESCA). Methods:We downloaded the ESCA dataset from The Cancer Genome Atlas (TCGA) database, which contained RNA-seq data, miRNA-seq data, methylation data, and clinical phenotype information. Then, we combined ESCA-related genes from the NCBI-GENE and OMIM databases and RNA-seq dataset from TCGA to analyze differentially expressed genes (DEGs). Meanwhile, differentially expressed miRNAs (DEmiRNAs) and genes with differential methylation levels were identified. The pivot-module pairs were established using the RAID v2.0 database and TRRUST v2 database. Next, the multifactor-regulated functional network was constructed based on the above information. Additionally, gene corresponding targeted drug information was obtained from the DrugBank database. Moreover, we further screened regulators by assessing their diagnostic value and prognostic value, especially the value of distinguishing patients at TNM I stage from normal patients. In addition, the external database from the Gene Expression Omnibus (GEO) database was used for validation. Lastly, gene set enrichment analysis (GSEA) was performed to explore the potential biological functions of key regulators. Results:Our study indicated that CXCL8, CYP2C8, and E2F1 had excellent diagnostic and prognostic values, which may be potential regulators of ESCA. At the same time, the good early diagnosis ability of the three regulators also provided new insights for the diagnosis and early treatment of ESCA patients. Conclusion:We develop a multiscale integrated analysis and suggest that CXCL8, CYP2C8, and E2F1 are promising regulators with good diagnostic and prognostic values in ESCA.
journal_name
Biomed Res Intjournal_title
BioMed research internationalauthors
Xu Z,Wu Z,Zhang J,Zhou R,Wu J,Yu Bdoi
10.1155/2020/5603958subject
Has Abstractpub_date
2020-08-12 00:00:00pages
5603958eissn
2314-6133issn
2314-6141journal_volume
2020pub_type
杂志文章abstract::Each year, hundreds of millions of people travel across international borders or even oceans, and up to 230 million may remain for long periods. Among these, 3-5 million settle permanently in their new homes, with about 1 million migrating permanently to the United States of America. This may result in transport of pa...
journal_title:BioMed research international
pub_type: 杂志文章,评审
doi:10.1155/2015/763715
更新日期:2015-01-01 00:00:00
abstract::Aspergillus species originating from Greece were examined by morphological and molecular criteria to explore the diversity of this genus. The phylogenetic relationships of these species were determined using sequences from the ITS and IGS region of the nuclear rRNA gene complex, two nuclear genes ( β -tubulin (benA) a...
journal_title:BioMed research international
pub_type: 杂志文章
doi:10.1155/2013/260395
更新日期:2013-01-01 00:00:00
abstract::Studies on the occurrence of pharmaceuticals show that the widely used pharmaceuticals ibuprofen and diclofenac are present in relevant concentrations in the environment. A pilot plant treating hospital wastewater with relevant concentrations of these pharmaceuticals was evaluated for its performance to reduce the con...
journal_title:BioMed research international
pub_type: 杂志文章
doi:10.1155/2013/325806
更新日期:2013-01-01 00:00:00
abstract::Puffer fishes were collected from the central sea in Vietnam from spring to summer season. The eggs were incubated in MRS broth that was used to test the toxicity in mice and isolate the lactic acid bacteria community that could produce tetrodotoxin (TTX). Thin layer chromatography (TLC) and high performance lipid chr...
journal_title:BioMed research international
pub_type: 杂志文章
doi:10.1155/2015/973235
更新日期:2015-01-01 00:00:00
abstract::Influenza vaccination for health care personnel (HCP) is recommended particularly because it indirectly protects patients from contracting the disease. Vaccinating can therefore be interpreted as a prosocial act. However, HCP vaccination rates are often far too low to prevent nosocomial infections. Effective intervent...
journal_title:BioMed research international
pub_type: 杂志文章
doi:10.1155/2016/6870984
更新日期:2016-01-01 00:00:00
abstract::Caudal epidural block is a commonly used technique for surgical anesthesia in children and chronic pain management in adults. It is performed by inserting a needle through the sacral hiatus to gain entrance into the sacral epidural space. Using conventional blind technique, the failure rate of caudal epidural block in...
journal_title:BioMed research international
pub_type: 杂志文章,评审
doi:10.1155/2017/9217145
更新日期:2017-01-01 00:00:00
abstract::Canine inflammatory mammary cancer (IMC) shares clinical and histopathological characteristics with human inflammatory breast cancer (IBC) and has been proposed as a good model for studying the human disease. The aim of this study was to evaluate the capacity of female and male mice to reproduce IMC and IBC tumors and...
journal_title:BioMed research international
pub_type: 杂志文章
doi:10.1155/2016/8909878
更新日期:2016-01-01 00:00:00
abstract::Two field isolates of Rhizoctonia solani were isolated from infected paddy plants in Malaysia. These isolates were verified via ITS-rDNA analysis that yielded ~720 bp products of the ITS1-5.8S-ITS4 region, respectively. The sequenced products showed insertion and substitution incidences which may result in strain dive...
journal_title:BioMed research international
pub_type: 杂志文章
doi:10.1155/2014/434257
更新日期:2014-01-01 00:00:00
abstract::Enzymes play important roles in most of the biological processes. Although only a small fraction of residues are directly involved in catalytic reactions, these catalytic residues are the most crucial parts in enzymes. The study of the fundamental and unique features of catalytic residues benefits the understanding of...
journal_title:BioMed research international
pub_type: 杂志文章
doi:10.1155/2013/802945
更新日期:2013-01-01 00:00:00
abstract::We compared the efficacy of intravitreal aflibercept (IVA) to intravitreal ranibizumab (IVR) injections in eyes with diabetic macular edema (DME). The medical records of 49 eyes of 36 patients who were diagnosed with DME and had received IVR and 46 eyes of 40 patients who had received IVA treatment were reviewed. The ...
journal_title:BioMed research international
pub_type: 临床试验,杂志文章
doi:10.1155/2017/1747108
更新日期:2017-01-01 00:00:00
abstract:Objectives:To evaluate the effects of pentobarbital dosages on lower urinary tract function and to define an appropriate dosage of sodium pentobarbital that would be suitable for urodynamic studies in which recovery from anesthesia and long term survive were needed for subsequent experiment. Methods:Twenty-four 8-week...
journal_title:BioMed research international
pub_type: 杂志文章
doi:10.1155/2020/6109497
更新日期:2020-06-11 00:00:00
abstract::Interest is rising for animal modeling of pathological gambling. Using the operant probabilistic-delivery task (PDT), gambling proneness can be evaluated in laboratory animals. Drawing a comparison with rats, this study evaluated the common marmoset (Callithrix jacchus) using a PDT. By nose- or hand-poking, subjects l...
journal_title:BioMed research international
pub_type: 杂志文章
doi:10.1155/2014/927685
更新日期:2014-01-01 00:00:00
abstract::The goal of this study was to analyse perceptually and acoustically the voices of patients with Unilateral Vocal Fold Paralysis (UVFP) and compare them to the voices of normal subjects. These voices were analysed perceptually with the GRBAS scale and acoustically using the following parameters: mean fundamental freque...
journal_title:BioMed research international
pub_type: 杂志文章
doi:10.1155/2015/704121
更新日期:2015-01-01 00:00:00
abstract:Background:A deficiency in steroid 5α-reductase type 2 is an autosomal recessive disorder. Affected individuals manifested ambiguous genitalia, which is caused by decreased dihydrotestosterone (DHT) synthesis in the fetus. Methods:We analyzed 25 patients with 5α-reductase deficiency in China. Seventeen of the 25 patie...
journal_title:BioMed research international
pub_type: 杂志文章
doi:10.1155/2020/1789514
更新日期:2020-06-09 00:00:00
abstract:Background:Promoting health-enhancing physical activity following rehabilitation is a well-known challenge. This study analysed the barriers to leisure time activity among low back pain patients. Methods:A subset of 192 low back pain patients who participated in a randomized controlled trial promoting physical activit...
journal_title:BioMed research international
pub_type: 杂志文章,随机对照试验
doi:10.1155/2017/6925079
更新日期:2017-01-01 00:00:00
abstract:PURPOSE:The primary aim of this study was to explore if classification, whether using the BI-RADS categories based on CEUS or conventional ultrasound, was conducive to the identification of benign and malignant category 3 or 4 small breast lesions. MATERIAL AND METHODS:We evaluated 30 malignant and 77 benign small bre...
journal_title:BioMed research international
pub_type: 临床试验,杂志文章
doi:10.1155/2014/572532
更新日期:2014-01-01 00:00:00
abstract::The influence of biomimetic calcium phosphate coating on osteoblasts behavior in vitro is not well established yet. In this study, we investigated the behavior of osteoblastic rat osteosarcoma 17/2.8 cells (ROS17/2.8) on two groups of biomaterial surfaces: alkaline-treated titanium surface (ATT) and biomimetic calcium...
journal_title:BioMed research international
pub_type: 杂志文章
doi:10.1155/2013/832790
更新日期:2013-01-01 00:00:00
abstract::Hemoglobin, which widely exists in all vertebrates and in some invertebrates, is possibly a precursor of antimicrobial peptides (AMPs). However, AMPs in the hemoglobin of invertebrates have been rarely investigated. This study is the first to report the full-length cDNA, prokaryotic expression, and antimicrobial activ...
journal_title:BioMed research international
pub_type: 杂志文章
doi:10.1155/2016/5683026
更新日期:2016-01-01 00:00:00
abstract::Autoimmunity remains a complex physiologic deviation, enabled and perpetuated by a variety of interplayers and pathways. Simplistic approaches, targeting either isolated end-effectors of more centrally placed interactors of these mechanisms, are continuously tried in an effort to comprehend and halt cascades with pote...
journal_title:BioMed research international
pub_type: 杂志文章,评审
doi:10.1155/2014/973609
更新日期:2014-01-01 00:00:00
abstract::Tyrosol hydroxylating Pseudomonas strain was previously isolated from olive mill wastewaters-irrigated soil. In the present work, experimental design was used to study the bioconversion of tyrosol in laboratory fermenters aiming at the recovery of the highest yields of hydroxytyrosol. The effects of biocatalyst loadin...
journal_title:BioMed research international
pub_type: 杂志文章
doi:10.1155/2018/7390751
更新日期:2018-07-09 00:00:00
abstract:Objective:The aim of this study was to investigate the association between adiponectin gene polymorphisms rs10937273, rs1501299, rs182052, rs2241767, and rs266729 and environmental risk factors of type 2 diabetes mellitus (T2DM) in Hohhot. The study explored different models of gene-environment interactions, aimed at p...
journal_title:BioMed research international
pub_type: 杂志文章
doi:10.1155/2020/6383906
更新日期:2020-06-21 00:00:00
abstract::Introduction. The aim of the present study was to determine the closeness of agreement between a self-reported and an objective measure of physical activity in low back pain patients and healthy controls. Beyond, influencing factors on overestimation were identified. Methods. 27 low back pain patients and 53 healthy c...
journal_title:BioMed research international
pub_type: 杂志文章
doi:10.1155/2016/1497213
更新日期:2016-01-01 00:00:00
abstract::The complete chloroplast genome of J. flava, an endangered medicinal plant in Saudi Arabia, was sequenced and compared with cp genome of three Acanthaceae species to characterize the cp genome, identify SSRs, and also detect variation among the cp genomes of the sampled Acanthaceae. NOVOPlasty was used to assemble the...
journal_title:BioMed research international
pub_type: 杂志文章
doi:10.1155/2019/4370258
更新日期:2019-08-06 00:00:00
abstract:Background:Adverse drug reactions (ADRs) are the known cause of morbidity and mortality, resulting in increased hospitalization, healthcare costs, complications, and decreased adherence in patients with depression. This study is aimed at evaluating adverse drug reactions due to antidepressants among patients with depre...
journal_title:BioMed research international
pub_type: 杂志文章
doi:10.1155/2020/6682928
更新日期:2020-11-16 00:00:00
abstract::[This corrects the article DOI: 10.1155/2015/714230.]. ...
journal_title:BioMed research international
pub_type: 已发布勘误
doi:10.1155/2016/9325260
更新日期:2016-01-01 00:00:00
abstract::Cancer metastasis has been demonstrated as it is the culmination of a cascade of priming steps. Increasing evidence has shown that tumor-derived molecular components (TDMCs) are known as extra cellular vesicle and nonvesicle factors and serve as versatile intercellular communication vehicles which can mediate signalin...
journal_title:BioMed research international
pub_type: 杂志文章,评审
doi:10.1155/2019/9258075
更新日期:2019-06-12 00:00:00
abstract::Acute graft-versus-host disease (aGVHD) is a major complication of allogeneic hematopoietic stem cell transplantation (allo-HSCT) and a major cause of nonrelapse mortality after allo-HSCT. A conditioning regimen plays a pivotal role in the development of aGVHD. To provide a platform for studying aGVHD and evaluating t...
journal_title:BioMed research international
pub_type: 杂志文章
doi:10.1155/2016/3071214
更新日期:2016-01-01 00:00:00
abstract::The body's autoimmune process is involved in the development of Graves' disease (GD), which is manifested by an overactive thyroid gland. In some patients, autoreactive inflammatory reactions contribute to the development of symptoms such as thyroid ophthalmopathy, and the subsequent signs and symptoms are derived fro...
journal_title:BioMed research international
pub_type: 杂志文章,评审
doi:10.1155/2019/7453260
更新日期:2019-11-12 00:00:00
abstract::Pancreatic ductal adenocarcinoma (PDA) is the fourth most common cancer causing death in the United States. Early tumor recurrence is an important contributor to the dismal prognosis. The availability of an accurate prognostic biomarker for predicting disease recurrence following curative resection will be beneficial ...
journal_title:BioMed research international
pub_type: 杂志文章,meta分析,评审
doi:10.1155/2014/468959
更新日期:2014-01-01 00:00:00
abstract::The aim of the present study was to determine if the Ki-67 labelling index reflects invasiveness of pituitary adenoma and to evaluate IL-17A concentration in blood serum of pituitary adenoma patients. The study was conducted in the Hospital of Lithuanian University of Health Sciences. All pituitary adenomas were analy...
journal_title:BioMed research international
pub_type: 杂志文章
doi:10.1155/2018/7490585
更新日期:2018-05-31 00:00:00