A phylogenetic analysis of Greek isolates of Aspergillus species based on morphology and nuclear and mitochondrial gene sequences.

Abstract:

:Aspergillus species originating from Greece were examined by morphological and molecular criteria to explore the diversity of this genus. The phylogenetic relationships of these species were determined using sequences from the ITS and IGS region of the nuclear rRNA gene complex, two nuclear genes ( β -tubulin (benA) and RNA polymerase II second largest subunit (rpb2)) and two mitochondrial genes (small rRNA subunit (rns) and cytochrome oxidase subunit I (cox1)) and, where available, related sequences from databases. The morphological characters of the anamorphs and teleomorphs, and the single gene phylogenetic trees, differentiated and placed the species examined in the well-supported sections of Aenei, Aspergillus, Bispori, Candidi, Circumdati, Clavati, Cremei, Flavi, Flavipedes, Fumigati, Nidulantes, Nigri, Restricti, Terrei, Usti, and Zonati, with few uncertainties. The combined use of the three commonly employed nuclear genes (benA, rpb2, and ITS), the IGS region, and two less often used mitochondrial gene sequences (rns and cox1) as a single unit resolved several taxonomic ambiguities. A phylogenetic tree was inferred using Neighbour-Joining, Maximum Parsimony, and Bayesian methods. The strains examined formed seven well-supported clades within the genus Aspergillus. Altogether, the concatenated nuclear and mitochondrial sequences offer additional tools for an improved understanding of phylogenetic relationships within this genus.

journal_name

Biomed Res Int

authors

Krimitzas A,Pyrri I,Kouvelis VN,Kapsanaki-Gotsi E,Typas MA

doi

10.1155/2013/260395

subject

Has Abstract

pub_date

2013-01-01 00:00:00

pages

260395

eissn

2314-6133

issn

2314-6141

journal_volume

2013

pub_type

杂志文章
  • Fracture Strength and Stress Distribution in Premolars Restored with Cast Post-and-Cores or Glass-Fiber Posts Considering the Influence of Ferule.

    abstract:Objectives:The aim of this study was to evaluate the influence of ferule and the post type on the fracture strength and stress distribution in premolars. Materials and Methods:Forty human mandibular premolars were decoronated, allocated in four groups, and restored as follows: CPC-NF: cast post-and-core and absence of...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2019/2196519

    authors: Bacchi A,Caldas RA,Schmidt D,Detoni M,Matheus Albino Souza,Cecchin D,Farina AP

    更新日期:2019-01-03 00:00:00

  • Craniofacial Anomaly Association with the Internal Malformations in the Pediatric Age Group in Al-Fallujah City-Iraq.

    abstract:Objectives:To estimate the prevalence of craniofacial anomalies among Iraqi people and its association with other congenital malformations. Methods:A hospital-based cohort study. It was conducted in Iraq, Fallujah city from Jan 2019-April 2019. The pediatric age group below 16 years attending the consultation clinic. ...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2020/4725141

    authors: Farhan TM,Al-Abdely BA,Abdullateef AN,Jubair AS

    更新日期:2020-08-18 00:00:00

  • Prevalence of Cam and Pincer Deformities in the X-Rays of Asymptomatic Individuals.

    abstract:Objective:The presence of radiological signs of femoroacetabular impingement (FAI) is not necessarily associated with symptoms. Hence, the prevalence of cam and pincer deformities in the overall population may be underestimated. The purpose of this study was to screen an unselected cohort of people without hip symptoms...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2017/8562329

    authors: Thier S,Gerisch D,Weiss C,Fickert S,Brunner A

    更新日期:2017-01-01 00:00:00

  • Corrigendum to "Complete Chloroplast Genome Sequence of Justicia flava: Genome Comparative Analysis and Phylogenetic Relationships among Acanthaceae".

    abstract::[This corrects the article DOI: 10.1155/2019/4370258.]. ...

    journal_title:BioMed research international

    pub_type: 杂志文章,已发布勘误

    doi:10.1155/2020/2049759

    authors: Yaradua SS,Alzahrani DA,Albokhary EJ,Abba A,Bello A

    更新日期:2020-07-16 00:00:00

  • Effects of Cobalt Chloride, a Hypoxia-Mimetic Agent, on Autophagy and Atrophy in Skeletal C2C12 Myotubes.

    abstract:BACKGROUND:Hypoxia-induced autophagy and muscle wasting occur in several environmental and pathological conditions. However, the molecular mechanisms underlying the effects of the hypoxia-mimetic agent CoCl2 on autophagy and muscle atrophy are still unclear. METHODS:C2C12 myotubes were exposed to increasing concentrat...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2017/7097580

    authors: Chen R,Jiang T,She Y,Xu J,Li C,Zhou S,Shen H,Shi H,Liu S

    更新日期:2017-01-01 00:00:00

  • Predicting Presynaptic and Postsynaptic Neurotoxins by Developing Feature Selection Technique.

    abstract::Presynaptic and postsynaptic neurotoxins are proteins which act at the presynaptic and postsynaptic membrane. Correctly predicting presynaptic and postsynaptic neurotoxins will provide important clues for drug-target discovery and drug design. In this study, we developed a theoretical method to discriminate presynapti...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2017/3267325

    authors: Tang H,Yang Y,Zhang C,Chen R,Huang P,Duan C,Zou P

    更新日期:2017-01-01 00:00:00

  • The Italian National External quality assessment program in molecular genetic testing: results of the VII round (2010-2011).

    abstract::Since 2001 the Istituto Superiore di Sanità established a quality assurance programme for molecular genetic testing that covers four pathologies: Cystic Fibrosis (CF), Beta Thalassemia (BT), Fragile X Syndrome (FX), and Familial Adenomatous Polyposis Coli (APC). Since 2009 this activity is an institutional activity an...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2013/739010

    authors: Censi F,Tosto F,Floridia G,Marra M,Salvatore M,Baffico AM,Grasso M,Melis MA,Pelo E,Radice P,Ravani A,Rosatelli C,Resta N,Russo S,Seia M,Varesco L,Falbo V,Taruscio D

    更新日期:2013-01-01 00:00:00

  • Antioxidant and hepatoprotective effect of aqueous extract of germinated and fermented mung bean on ethanol-mediated liver damage.

    abstract::Mung bean is a hepatoprotective agent in dietary supplements. Fermentation and germination processes are well recognized to enhance the nutritional values especially the concentration of active compounds such as amino acids and GABA of various foods. In this study, antioxidant and hepatoprotective effects of freeze-dr...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2013/693613

    authors: Mohd Ali N,Mohd Yusof H,Long K,Yeap SK,Ho WY,Beh BK,Koh SP,Abdullah MP,Alitheen NB

    更新日期:2013-01-01 00:00:00

  • Pyrosequencing reveals fungal communities in the rhizosphere of Xinjiang Jujube.

    abstract::Fungi are important soil components as both decomposers and plant symbionts and play a major role in ecological and biogeochemical processes. However, little is known about the richness and structure of fungal communities. DNA sequencing technologies allow for the direct estimation of microbial community diversity, av...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2015/972481

    authors: Liu P,Wang XH,Li JG,Qin W,Xiao CZ,Zhao X,Jiang HX,Sui JK,Sa RB,Wang WY,Liu XL

    更新日期:2015-01-01 00:00:00

  • EMRlog method for computer security for electronic medical records with logic and data mining.

    abstract::The proper functioning of a hospital computer system is an arduous work for managers and staff. However, inconsistent policies are frequent and can produce enormous problems, such as stolen information, frequent failures, and loss of the entire or part of the hospital data. This paper presents a new method named EMRlo...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2015/542016

    authors: Martínez Monterrubio SM,Frausto Solis J,Monroy Borja R

    更新日期:2015-01-01 00:00:00

  • Characterization of imidazoline receptors in blood vessels for the development of antihypertensive agents.

    abstract::It has been indicated that activation of peripheral imidazoline I2-receptor (I-2R) may reduce the blood pressure in spontaneously hypertensive rats (SHRs). Also, guanidinium derivatives show the ability to activate imidazoline receptors. Thus, it is of special interest to characterize the I-2R using guanidinium deriva...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2014/182846

    authors: Chen MF,Tsai JT,Chen LJ,Wu TP,Yang JJ,Yin LT,Yang YL,Chiang TA,Lu HL,Wu MC

    更新日期:2014-01-01 00:00:00

  • First-Trimester Crown-Rump Length and Embryonic Volume of Fetuses with Structural Congenital Abnormalities Measured in Virtual Reality: An Observational Study.

    abstract::Background. With the introduction of three-dimensional (3D) ultrasound it has become possible to measure volumes. The relative increase in embryonic volume (EV) is much larger than that of the crown-rump length (CRL) over the same time period. We examined whether EV is a better parameter to determine growth restrictio...

    journal_title:BioMed research international

    pub_type: 临床试验,杂志文章

    doi:10.1155/2017/1953076

    authors: Baken L,Benoit B,Koning AHJ,van der Spek PJ,Steegers EAP,Exalto N

    更新日期:2017-01-01 00:00:00

  • Potential Role of the Last Half Repeat in TAL Effectors Revealed by a Molecular Simulation Study.

    abstract::TAL effectors (TALEs) contain a modular DNA-binding domain that is composed of tandem repeats. In all naturally occurring TALEs, the end of tandem repeats is invariantly a truncated half repeat. To investigate the potential role of the last half repeat in TALEs, we performed comparative molecular dynamics simulations ...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2016/8036450

    authors: Wan H,Chang S,Hu JP,Tian XH,Wang MH

    更新日期:2016-01-01 00:00:00

  • Development of Isothermal Recombinase Polymerase Amplification Assay for Rapid Detection of Porcine Circovirus Type 2.

    abstract::Porcine circovirus virus type II (PCV2) is the etiology of postweaning multisystemic wasting syndrome (PMWS), porcine dermatitis, nephropathy syndrome (PDNS), and necrotizing pneumonia. Rapid diagnosis tool for detection of PCV2 plays an important role in the disease control and eradication program. Recombinase polyme...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2017/8403642

    authors: Yang Y,Qin X,Sun Y,Cong G,Li Y,Zhang Z

    更新日期:2017-01-01 00:00:00

  • Clinical and Prognostic Significance of Positive Hepatojugular Reflux on Discharge in Acute Heart Failure: Insights from the ESCAPE Trial.

    abstract::Background. There has been a decline in emphasis of the value of physical examination in heart failure (HF) with increased reliance on cardiac imaging. We aim to study the clinical and prognostic significance of positive hepatojugular reflux (HJR) on discharge in patients hospitalized with HF. Methods. Using the ESCAP...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2017/5734749

    authors: Omar HR,Guglin M

    更新日期:2017-01-01 00:00:00

  • Multiparametric MRI for localized prostate cancer: lesion detection and staging.

    abstract::Multiparametric MRI of the prostate combines high-resolution anatomic imaging with functional imaging of alterations in normal tissue caused by neoplastic transformation for the identification and characterization of in situ prostate cancer. Lesion detection relies on a systematic approach to the analysis of both anat...

    journal_title:BioMed research international

    pub_type: 杂志文章,评审

    doi:10.1155/2014/684127

    authors: Margolis DJ

    更新日期:2014-01-01 00:00:00

  • Shock absorbing function study on denucleated intervertebral disc with or without hydrogel injection through static and dynamic biomechanical tests in vitro.

    abstract::Hydrogel injection has been recently proposed as a novel therapy for disc degenerative diseases, with the potential to restore the spine motion and the intervertebral disc height. However, it remains unknown whether the new technique could also maintain the shock absorbing property of the treated intervertebral disc. ...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2014/461724

    authors: Zhou Z,Gao M,Wei F,Liang J,Deng W,Dai X,Zhou G,Zou X

    更新日期:2014-01-01 00:00:00

  • Corticospinal reorganization after locomotor training in a person with motor incomplete paraplegia.

    abstract::Activity-dependent plasticity as a result of reorganization of neural circuits is a fundamental characteristic of the central nervous system that occurs simultaneously in multiple sites. In this study, we established the effects of subthreshold transcranial magnetic stimulation (TMS) over the primary motor cortex regi...

    journal_title:BioMed research international

    pub_type: 临床试验,杂志文章

    doi:10.1155/2013/516427

    authors: Hajela N,Mummidisetty CK,Smith AC,Knikou M

    更新日期:2013-01-01 00:00:00

  • A Comparison of the Effects of Neuronal Nitric Oxide Synthase and Inducible Nitric Oxide Synthase Inhibition on Cartilage Damage.

    abstract::The objective of this study was to investigate the effects of selective inducible nitric oxide synthase and neuronal nitric oxide synthase inhibitors on cartilage regeneration. The study involved 27 Wistar rats that were divided into five groups. On Day 1, both knees of 3 rats were resected and placed in a formalin so...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2016/7857345

    authors: Gokay NS,Yilmaz I,Komur B,Demiroz AS,Gokce A,Dervisoglu S,Gokay BV

    更新日期:2016-01-01 00:00:00

  • The Use and Effectiveness of Triple Multiplex System for Coding Region Single Nucleotide Polymorphism in Mitochondrial DNA Typing of Archaeologically Obtained Human Skeletons from Premodern Joseon Tombs of Korea.

    abstract::Previous study showed that East Asian mtDNA haplogroups, especially those of Koreans, could be successfully assigned by the coupled use of analyses on coding region SNP markers and control region mutation motifs. In this study, we tried to see if the same triple multiplex analysis for coding regions SNPs could be also...

    journal_title:BioMed research international

    pub_type: 历史文章,杂志文章

    doi:10.1155/2015/850648

    authors: Oh CS,Lee SD,Kim YS,Shin DH

    更新日期:2015-01-01 00:00:00

  • Population Structure of Leishmania tropica Causing Anthroponotic Cutaneous Leishmaniasis in Southern Iran by PCR-RFLP of Kinetoplastid DNA.

    abstract::Iran is one of the six countries with the most cutaneous leishmaniasis (CL) patients. Understanding better the genotypes of the parasite population in relation to geography and climate is critical to achieving better CL control. We aimed to characterise the population structure of Leishmania tropica, the cause of anth...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2018/6049198

    authors: Ghatee MA,Mirhendi H,Marashifard M,Kanannejad Z,Taylor WR,Sharifi I

    更新日期:2018-06-06 00:00:00

  • Techniques and Methods for Testing the Postural Function in Healthy and Pathological Subjects.

    abstract::The different techniques and methods employed as well as the different quantitative and qualitative variables measured in order to objectify postural control are often chosen without taking into account the population studied, the objective of the postural test, and the environmental conditions. For these reasons, the...

    journal_title:BioMed research international

    pub_type: 杂志文章,评审

    doi:10.1155/2015/891390

    authors: Paillard T,Noé F

    更新日期:2015-01-01 00:00:00

  • XRRA1 Targets ATM/CHK1/2-Mediated DNA Repair in Colorectal Cancer.

    abstract::X-ray radiation resistance associated 1 (XRRA1) has been found to regulate the response of human tumor and normal cells to X-radiation (XR). Although XRRA1 overexpression is known to be involved in cancer cell response to XR, there are no reports about whether the expression of XRRA1 in tumors can adjust radioresistan...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2017/5718968

    authors: Wang W,Guo M,Xia X,Zhang C,Zeng Y,Wu S

    更新日期:2017-01-01 00:00:00

  • Utility of Ultrasonography in Assessing the Effectiveness of Extracorporeal Shock Wave Therapy in Insertional Achilles Tendinopathy.

    abstract::Introduction. The aim of this study was to investigate the utility of ultrasonography (US) for predicting and assessing the effectiveness of extracorporeal shock wave therapy (ESWT) in insertional Achilles tendinopathy (IAT). Methods. A total of 42 patients with an established diagnosis of chronic IAT were examined by...

    journal_title:BioMed research international

    pub_type: 临床试验,杂志文章

    doi:10.1155/2016/2580969

    authors: Cheng Y,Zhang J,Cai Y

    更新日期:2016-01-01 00:00:00

  • The effects of intravenous fosaprepitant and ondansetron for the prevention of postoperative nausea and vomiting in neurosurgery patients: a prospective, randomized, double-blinded study.

    abstract::The incidence of postoperative nausea and vomiting (PONV) is 30-50% after surgery. PONV occurs frequently, especially after craniotomy. In this study, we investigated the preventive effects on PONV in a randomized study by comparing patients who had been administered fosaprepitant, a neurokinin-1 (NK1) receptor antago...

    journal_title:BioMed research international

    pub_type: 杂志文章,随机对照试验

    doi:10.1155/2014/307025

    authors: Tsutsumi YM,Kakuta N,Soga T,Kume K,Hamaguchi E,Tsutsumi R,Tanaka K

    更新日期:2014-01-01 00:00:00

  • Circulating Tumour Cells, Circulating Tumour DNA and Circulating Tumour miRNA in Blood Assays in the Different Steps of Colorectal Cancer Management, a Review of the Evidence in 2019.

    abstract::Despite many advances in the diagnosis and treatment of colorectal cancer (CRC), its incidence and mortality rates continue to make an impact worldwide and in some countries rates are mounting. Over the past decade, liquid biopsies have been the object of fundamental and clinical research with regard to the different ...

    journal_title:BioMed research international

    pub_type: 杂志文章,评审

    doi:10.1155/2019/5953036

    authors: Christou N,Meyer J,Popeskou S,David V,Toso C,Buchs N,Liot E,Robert J,Ris F,Mathonnet M

    更新日期:2019-12-04 00:00:00

  • The role of PinX1 in growth control of breast cancer cells and its potential molecular mechanism by mRNA and lncRNA expression profiles screening.

    abstract::As a major tumor suppressor gene, the role of PinX1 in breast cancer and its molecular mechanism remain unclear. In this study, overexpression of PinX1 was generated in 3 breast cancer cell lines, and knockdown of PinX1 was performed in a nontumorigenic breast cell line. The regulation of PinX1 on cell proliferation a...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2014/978984

    authors: Shi R,Zhou JY,Zhou H,Zhao Z,Liang SH,Zheng WL,Ma WL

    更新日期:2014-01-01 00:00:00

  • Interferon-α enhances 5'-deoxy-5-fluorouridine-induced apoptosis by ERK-dependant upregulation of thymidine phosphorylase.

    abstract::5-Florouracil (5-FU) is the basic agent used in the treatment of gastric cancer. Capecitabine, a prodrug of 5-FU, displays increased antitumor efficacy compared with 5-FU in the clinic. 5'-Deoxy-5-fluorouracil (5'-DFUR), the metabolite of capecitabine, is converted to 5-FU by the enzyme thymidine phosphorylase (TP), w...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2013/132793

    authors: Zhu Y,Xu L,Fan Y,Li C,Zhang Y,Zheng H,Hou K,Qu X,Liu Y

    更新日期:2013-01-01 00:00:00

  • Comparison of Malated Ringer's with Two Other Balanced Crystalloid Solutions in Resuscitation of Both Severe and Moderate Hemorrhagic Shock in Rats.

    abstract::In preclinical treatment of polytraumatized patients crystalloids are preferentially used. To avoid metabolic acidosis, metabolizable anions like lactate or acetate are used to replace chloride in these solutions. We here studied the effects of malated Ringer's in resuscitation of both shock severities in comparison t...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2015/151503

    authors: Keitel J,Hussmann B,Lendemans S,de Groot H,Rohrig R

    更新日期:2015-01-01 00:00:00

  • Microscopic Monitoring of Erythrocytes Deformation under Different Shear Stresses Using Computerized Cone and Plate Flow Chamber: Analytical Study of Normal Erythrocytes and Iron Deficiency Anemia.

    abstract::Erythrocytes deformation is one of the exciting properties of erythrocytes. It is still under investigation by many of the researchers in different disciplines. The clinicians and researchers are still looking for a simple and efficient method to monitor and tracking the erythrocytes deformation. This research article...

    journal_title:BioMed research international

    pub_type: 杂志文章

    doi:10.1155/2018/6067583

    authors: Elblbesy MA

    更新日期:2018-10-24 00:00:00