Abstract:
:Little is known about the archaeal and the bacterial diversities in a landfill during different phases of decomposition. In this study, the archaeal and the bacterial diversities of Laogang landfill (Shanghai, China) at two different decomposition phases (i.e., initial methanogenic phase (IMP) and stable methanogenic phase (SMP)), were culture-independently examined using PCR-based 454 pyrosequencing. A total of 47,753 sequences of 16S rRNA genes were retrieved from 69,954 reads and analyzed to evaluate the diversities of the archaeal and bacterial communities. The most predominant types of archaea were hydrogenotrophic Methanomicrobiales, and of bacteria were Proteobacteria, Firmicutes, and Bacteroidetes. As might be expected, their abundances varied at decomposition phases. Archaea Methanomicrobiales accounts for 97.6% of total archaeal population abundance in IMP and about 57.6% in SMP. The abundance of archaeal genus Halobacteriale was 0.1% in IMP and was 20.3% in the SMP. The abundance of Firmicutes was 21.3% in IMP and was 4.3% in SMP. The abundance of Bacteroidetes represented 11.5% of total bacterial in IMP and was dominant (49.4%) in SMP. Both the IMP and SMP had unique cellulolytic bacteria compositions. IMP consisted of members of Bacillus, Fibrobacter, and Eubacterium, while SMP harbored groups of Microbacterium. Both phases had Clostridium with different abundance, 4-5 folds higher in SMP.
journal_name
Microbiol Resjournal_title
Microbiological researchauthors
Song L,Wang Y,Zhao H,Long DTdoi
10.1016/j.micres.2015.04.009subject
Has Abstractpub_date
2015-12-01 00:00:00pages
105-11eissn
0944-5013issn
1618-0623pii
S0944-5013(15)00069-5journal_volume
181pub_type
杂志文章abstract::Bacteria can form heterogeneous populations containing phenotypic variants of genetically identical cells. The heterogeneity of populations can be considered a bet-hedging strategy allowing adaptation to unknown environmental changes - at least some individual subpopulations or cells might be able to withstand future ...
journal_title:Microbiological research
pub_type: 杂志文章
doi:10.1016/j.micres.2018.02.002
更新日期:2018-04-01 00:00:00
abstract::Selected isolates of Pseudomonas fluorescens (Pf1-94, Pf4-92, Pf12-94, Pf151-94 and Pf179-94) and chemical resistance inducers (salicylic acid, acetylsalicylic acid, DL-norvaline, indole-3-carbinol and lichenan) were examined for growth promotion and induced systemic resistance against Fusarium wilt of chickpea. A mar...
journal_title:Microbiological research
pub_type: 杂志文章
doi:10.1078/0944-5013-00202
更新日期:2003-01-01 00:00:00
abstract::Biofilms are the most widely distributed and successful microbial modes of life. The capacity of bacteria to colonize surfaces provides stability in the growth environment, allows the capturing of nutrients and affords protection from a range of environmental challenges and stress. Bacteria living in cold environments...
journal_title:Microbiological research
pub_type: 杂志文章
doi:10.1016/j.micres.2018.09.010
更新日期:2019-01-01 00:00:00
abstract::The aim of this study was to assess the potential of lactic acid bacteria to inhibit the outgrowth of some common food-spoiling fungi. Culture supernatants of 17 Lactic acid bacterial strains as well as of three commercial probiotic cultures were evaluated for antifungal activity using an agar-diffusion method. The me...
journal_title:Microbiological research
pub_type: 杂志文章
doi:10.1016/j.micres.2004.07.002
更新日期:2004-01-01 00:00:00
abstract::Xanthomonas axonopodis pv. punicae (Xap), the bacterial blight pathogen of pomegranate, incurs substantial loss to yield and reduces export quality of this economically important fruit crop. During infection, the bacterium secretes six non-TAL (Xop) effectors into the pomegranate cells through a specialized type three...
journal_title:Microbiological research
pub_type: 杂志文章
doi:10.1016/j.micres.2020.126560
更新日期:2020-11-01 00:00:00
abstract::Alternaria species have been recognized as important cause of allergic diseases and are considered opportunistic pathogens for immunocompromised individuals. In order to assess the contribution of waters to the spread of Alternaria, we examined 390 water samples of various origin for the presence of these microorganis...
journal_title:Microbiological research
pub_type: 杂志文章
doi:10.1016/S0944-5013(00)80022-1
更新日期:2000-04-01 00:00:00
abstract::Flavin adenine dinucleotide (FAD)-binding proteins play a vital role in energy transfer and utilization during fungal growth and mycelia aggregation. We sequenced the genome of Volvariella volvacea, an economically important edible fungus, and discovered 41 genes encoding FAD-binding proteins. Gene expression profiles...
journal_title:Microbiological research
pub_type: 杂志文章
doi:10.1016/j.micres.2013.02.009
更新日期:2013-10-01 00:00:00
abstract::The community and Cd-resistance of endophytic fungi from roots of Salix variegata Franch. collected from the water-level-fluctuation zone of Three Gorges Reservoir Region, China, were investigated. A total of 53 strains were isolated and identified to 13 morphotaxa, in which Chromosporium, Fusarium and Gonatobotrys we...
journal_title:Microbiological research
pub_type: 杂志文章
doi:10.1016/j.micres.2015.03.013
更新日期:2015-07-01 00:00:00
abstract::Diseases in plants are mostly caused by fungi. Fungal interactions with the host can be either biotrophic, necrotrophic or hemibiotrophic. Synergistic polymicrobial interactions have been recently recognized that can also attribute to the occurrence of complex plant diseases. Tea is one of the most widely consumed bev...
journal_title:Microbiological research
pub_type: 杂志文章
doi:10.1016/j.micres.2020.126561
更新日期:2020-11-01 00:00:00
abstract::In spite of reports on cytokines induction by the Brucella DNA in murine model, there is no comparison between pathogenic and appropriate vaccine strains in human. We investigated the cytokines profile of human peripheral blood mononuclear cells (PBMCs) induced by DNA extracted from pathogenic isolates of Brucella mel...
journal_title:Microbiological research
pub_type: 杂志文章
doi:10.1016/j.micres.2006.07.012
更新日期:2008-01-01 00:00:00
abstract::Studies on the microbial ecology of gut microbiota in bats are limited and such information is necessary in determining the ecological significance of these hosts. Short-nosed fruit bats (Cynopterus brachyotis brachyotis) are good candidates for microbiota studies given their close association with humans in urban are...
journal_title:Microbiological research
pub_type: 杂志文章
doi:10.1016/j.micres.2013.04.001
更新日期:2013-10-01 00:00:00
abstract::Eight ectomycorrhizal fungal isolates of Pisolithus associated with Eucalyptus species in different parts of India were collected and the genetic variability of these isolates was studied by ITS-RFLP and ITS sequencing. All the isolates showed same RFLP patterns with each restriction enzyme, indicating all these isola...
journal_title:Microbiological research
pub_type: 杂志文章
doi:10.1016/j.micres.2004.03.003
更新日期:2004-01-01 00:00:00
abstract::"Bryndza" is a traditional Slovak dairy product (type of soft cheese) made from sheep cheese which was ripened for 14 days. Because its manufacture, transporting and/or storing represent conditions which facilitate contamination, the effect of enterocin CCM4231 in "bryndza" was investigated with the aim to reduce the ...
journal_title:Microbiological research
pub_type: 杂志文章
doi:10.1078/0944-5013-00078
更新日期:2001-01-01 00:00:00
abstract::The emergent pathogen Candida glabrata differs from other yeasts because it assimilates only two sugars, glucose and the disaccharide trehalose. Since rapid identification tests are based on the ability of this yeast to rapidly hydrolyze trehalose, in this work a biochemical and molecular characterization of trehalose...
journal_title:Microbiological research
pub_type: 杂志文章
doi:10.1016/j.micres.2015.06.008
更新日期:2015-10-01 00:00:00
abstract::The genus Pseudomonas is known to comprise a huge diversity of species with the ability to thrive in different habitats, including those considered as extreme environments. In the present study, a psychrotolerant, wide pH tolerant and halotolerant strain of Pseudomonas chlororaphis GBPI_507 (MCC2693), isolated from th...
journal_title:Microbiological research
pub_type: 杂志文章
doi:10.1016/j.micres.2016.04.017
更新日期:2016-09-01 00:00:00
abstract::Zymography of alcohol dehydrogenase (ADH) activity in the entomopathogenic fungus Metarhizium anisopliae grown under various conditions revealed that micro-aerobic growth was associated with increased ADH activity. The major ADH protein, AdhIp, was purified to homogeneity by affinity chromatography and has an estimate...
journal_title:Microbiological research
pub_type: 杂志文章
doi:10.1016/j.micres.2014.11.006
更新日期:2015-03-01 00:00:00
abstract::The genes that encode the alpha and beta subunits of protocatechuate 3,4-dioxygenase (3,4-PCD [EC 1.13.11.3]) were cloned from a Pseudomonas marginata genomic library. These genes pcaG and pcaH, were found when screening the library for hydrolase genes. The two open reading frames of the PCD genes could be identified ...
journal_title:Microbiological research
pub_type: 杂志文章
doi:10.1016/s0944-5013(96)80004-8
更新日期:1996-12-01 00:00:00
abstract::Aerated lagoons are commonly used for domestic and industrial wastewater treatment due to their low cost and minimal need of operational requirements. However, little information is known regarding microbial communities that inhabit these ecosystems. In this study, a 16S-DGGE approach was used to estimate bacterial di...
journal_title:Microbiological research
pub_type: 杂志文章
doi:10.1016/j.micres.2007.06.005
更新日期:2009-01-01 00:00:00
abstract::Polyamines are small polycations essential for cell growth. Ornithine decarboxylase (ODC), the first enzyme of the polyamine synthesis pathway, is one of the most regulated enzymes of eukaryotes. In the present report, the transcriptional regulation of the gene encoding ODC from the dimorphic fungus Yarrowia lipolytic...
journal_title:Microbiological research
pub_type: 杂志文章
doi:10.1016/j.micres.2008.05.001
更新日期:2008-01-01 00:00:00
abstract::By chemical permeabilization of E. coli cells with detergents and membrane active peptides considerable amounts of the periplasmic anti-PC-miniantibodies can be released. Releases of active miniantibodies of 31%, respectively of 38%, were obtained by exposing low cell density suspensions to nonionic detergents like Tr...
journal_title:Microbiological research
pub_type: 杂志文章
doi:10.1016/S0944-5013(97)80056-0
更新日期:1997-12-01 00:00:00
abstract::Soybean (Glycine max L.) is among the most economically important legumes that provide more than 1/4 of food (for man) and animal feed. However, its yield is comparatively low, most especially under drought stress. The aim of this study therefore was to assess the ability of Rhizobium spp. and mycorrhizal fungi to enh...
journal_title:Microbiological research
pub_type: 杂志文章
doi:10.1016/j.micres.2020.126640
更新日期:2021-01-01 00:00:00
abstract::The endophytic bacteria were isolated from coffee roots and seeds in Vietnam and identified with 16S rDNA sequencing as belonging to the Actinobacteria, Firmicutes and Proteobacteria phyla with the Nocardia, Bacillus and Burkholderia as dominant genera, respectively. Out of the thirty genera recovered from Coffea cane...
journal_title:Microbiological research
pub_type: 杂志文章
doi:10.1016/j.micres.2020.126613
更新日期:2021-01-01 00:00:00
abstract::Systemic yeast infections are the Leading cause of mortality and morbidity in immunocompromized patients. Candida albicans, being the most frequently isolated fungal pathogen in these patients, can be divided into three genotypes (genotypes A, B and C) by 25S intron analysis. In our study, we found that molecular size...
journal_title:Microbiological research
pub_type: 杂志文章
doi:10.1016/j.micres.2005.02.010
更新日期:2005-01-01 00:00:00
abstract::Alcaligenes sp. strain O-1 inducibly deaminates 2-aminobenzenesulfonate (ABS) via dioxygenation to 3-sulfocatechol, which is desulfonated during meta ring-cleavage to yield 2-hydroxymuconate. This intermediate is transformed through the oxalocrotonate-branch of the sulfocatechol meta-pathway (Scm). The complete pathwa...
journal_title:Microbiological research
pub_type: 杂志文章
doi:10.1016/j.micres.2009.05.006
更新日期:2010-05-30 00:00:00
abstract::Twenty-nine rhizobial isolates from root nodules of the wild Legumes Astragalus, Lespedeza and Hedysarum growing in the northwestern region of China, were characterized by numerical taxonomy, RFLP and sequencing of PCR-amplified 16S rDNA genes, and cross-nodulation with selected Legume species. Based on the results fr...
journal_title:Microbiological research
pub_type: 杂志文章
doi:10.1016/j.micres.2006.09.005
更新日期:2008-01-01 00:00:00
abstract::The organophosphorus hydrolase (OPH) of Nocardia sp. strain B-1 is capable of hydrolyzing organophosphate insecticides such as coumaphos and parathion. The 40,000 dalton OPH and the responsible gene (termed adpB) have been previously isolated and described. OPH activity in Nocardia strain B-1 is spontaneously lost at ...
journal_title:Microbiological research
pub_type: 杂志文章
doi:10.1016/s0944-5013(98)80003-7
更新日期:1998-11-01 00:00:00
abstract::Hirsutella rhossiliensis OWVT-1 has substantial potential as a biocontrol agent against plant-parasitic nematodes. Serine proteases have emerged as a potentially useful factor in the nematode-fungus interactions. When grown in liquid culture with the nematode Panagrellus redivivus as the sole nitrogen source, an extra...
journal_title:Microbiological research
pub_type: 杂志文章
doi:10.1016/j.micres.2009.01.003
更新日期:2009-01-01 00:00:00
abstract::We have cloned a laccase gene fragment isolated from a Trametes versicolor strain in Korea. It showed high similarity in nucleotide sequences when compared with other fungal laccases. TNT (2,4,6-trinitrotoluene), a widely used explosive, was transformed rapidly by T. versicolor. When TNT and its catabolic intermediate...
journal_title:Microbiological research
pub_type: 杂志文章
doi:10.1016/j.micres.2005.12.001
更新日期:2006-01-01 00:00:00
abstract::We previously reported that inactivation of a universally conserved dimethyl adenosine transferase (KsgA) attenuates virulence and increases sensitivity to oxidative and osmotic stress in Salmonella Enteritidis. Here, we show a role of KsgA in cell-envelope fitness as a potential mechanism underlying these phenotypes ...
journal_title:Microbiological research
pub_type: 杂志文章
doi:10.1016/j.micres.2018.08.009
更新日期:2018-11-01 00:00:00
abstract::Desaturases, key enzymes in the metabolism of fatty acids, regulate the physical and biochemical properties of membranes. They adjust the composition of saturated and unsaturated fatty acids in response to changes in the environmental. We demonstrated the existence of Δ9 desaturase activity in epimastigotes of the Try...
journal_title:Microbiological research
pub_type: 杂志文章
doi:10.1016/j.micres.2016.07.012
更新日期:2017-01-01 00:00:00