Oxidation-reduction cycles of peroxiredoxin proteins and nontranscriptional aspects of timekeeping.

Abstract:

:The circadian clock allows organisms to accurately predict the earth's rotation and modify their behavior as a result. Genetic analyses in a variety of organisms have defined a mechanism based largely on gene expression feedback loops. However, as we delve more deeply into the mechanisms of circadian timekeeping, we are discovering that post-translational mechanisms play a key role in defining the character of the clock. We are also discovering that these modifications are inextricably linked to cellular metabolism, including redox homeostasis. A robust circadian oscillation in the redox status of the peroxiredoxins (a major class of cellular antioxidants) was recently shown to be remarkably conserved from archaea and cyanobacteria all the way to plants and animals. Furthermore, recent findings indicate that cellular redox status is coupled not only to canonical circadian gene expression pathways but also to a noncanonical transcript-independent circadian clock. The redox rhythms observed in peroxiredoxins in the absence of canonical clock mechanisms may hint at the nature of this new and hitherto unknown aspect of circadian timekeeping.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Hoyle NP,O'Neill JS

doi

10.1021/bi5008386

subject

Has Abstract

pub_date

2015-01-20 00:00:00

pages

184-93

issue

2

eissn

0006-2960

issn

1520-4995

journal_volume

54

pub_type

杂志文章,评审
  • Relevance of partially structured states in the non-classical secretion of acidic fibroblast growth factor.

    abstract::Acidic fibroblast growth factor (aFGF) is a signal peptide-less protein that is secreted into the extracellular compartment as part of a multiprotein release complex, consisting of aFGF, S100A13 (a calcium binding protein), and a 40 kDa (p40) form of synaptotagmin (Syt1), a protein that participates in the docking of ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi7002586

    authors: Rajalingam D,Graziani I,Prudovsky I,Yu C,Kumar TK

    更新日期:2007-08-14 00:00:00

  • Investigating the structural dynamics of α-1,4-galactosyltransferase C from Neisseria meningitidis by nuclear magnetic resonance spectroscopy.

    abstract::Neisseria meningitidis α-1,4-galactosyltransferase C (LgtC) is responsible for the transfer of α-galactose from donor UDP-galactose to the lipooligosaccharide terminal acceptor lactose. Crystal structures of its substrate analogue complexes have provided key insights into the galactosyl transfer mechanism, including a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi301317d

    authors: Chan PH,Cheung AH,Okon M,Chen HM,Withers SG,McIntosh LP

    更新日期:2013-01-15 00:00:00

  • Transbilayer exchange of phosphatidylethanolamine for phosphatidylcholine and N-acetimidoylphosphatidylethanolamine in single-walled bilayer vesicles.

    abstract::A preparation of small single-walled liposome vesicles containing a 9:1 mole ratio of phosphatidylcholine to phosphatidylethanolamine was subjected to reaction with the membrane-impermeable reagent, isethionyl acetimidate hydrochloride. This reagent converted 90% of the external phosphatidylethanolamine groups to the ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00693a008

    authors: Roseman M,Litman BJ,Thompson TE

    更新日期:1975-11-04 00:00:00

  • O-phosphoserine content of intermediate filament subunits.

    abstract::Purified subunits of intermediate filaments obtained from a variety of tissues and cell types contain O-phosphoserine and, in some cases, smaller amounts of O-phosphothreonine. The O-phosphoserine content was estimated by reaction of performic acid oxidized subunits with methylamine in NaOH. Decamin of BHK-21 and CHO ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00530a030

    authors: Steinert PM,Wantz ML,Idler WW

    更新日期:1982-01-05 00:00:00

  • Inhibitors of the molybdenum cofactor containing 4-hydroxybenzoyl-CoA reductase.

    abstract::4-Hydroxybenzoyl-CoA reductase (4-HBCR) is a member of the xanthine oxidase (XO) family of molybdenum cofactor containing enzymes and catalyzes the irreversible removal of a phenolic hydroxy group by reduction, yielding benzoyl-CoA and water. In this work the effects of various activity modulating compounds were chara...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi800137v

    authors: Johannes J,Unciuleac MC,Friedrich T,Warkentin E,Ermler U,Boll M

    更新日期:2008-04-29 00:00:00

  • Heterotropic effectors promote a global conformational change in aspartate transcarbamoylase.

    abstract::The sigmoidal dependence of activity on substrate concentration exhibited by the regulatory enzyme aspartate transcarbamoylase (ATCase) of Escherichia coli is generally attributed to a ligand-promoted change in the quaternary structure of the enzyme. Although a global conformational change in ATCase upon the binding o...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00467a019

    authors: Eisenstein E,Markby DW,Schachman HK

    更新日期:1990-04-17 00:00:00

  • The ionic track in the F1-ATPase from the thermophilic Bacillus PS3.

    abstract::Only beta-beta cross-links form when the alpha(3)(betaE(395)C)(3)gammaK(36)C (MF(1) residue numbers) double mutant subcomplex of TF(1), the F(1)-ATPase from the thermophilic Bacillus PS3, is slowly inactivated with CuCl(2) in the presence or absence of MgATP. The same slow rate of inactivation and extent of beta-beta ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi036058i

    authors: Bandyopadhyay S,Allison WS

    更新日期:2004-03-09 00:00:00

  • Use of pH and kinetic isotope effects to establish chemistry as rate-limiting in oxidation of a peptide substrate by LSD1.

    abstract::The mechanism of oxidation of a peptide substrate by the flavoprotein lysine-specific demethylase (LSD1) has been examined using the effects of pH and isotopic substitution on steady-state and rapid-reaction kinetic parameters. The substrate contained the 21 N-terminal residues of histone H3, with a dimethylated lysyl...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi900499w

    authors: Gaweska H,Henderson Pozzi M,Schmidt DM,McCafferty DG,Fitzpatrick PF

    更新日期:2009-06-16 00:00:00

  • Interaction of alamethicin with lecithin bilayers: a 31P and 2H NMR study.

    abstract::The interaction of alamethicin with artificial lecithin multilamellar dispersions was investigated by nuclear magnetic resonance (NMR) and Raman spectroscopies. 31P NMR studies revealed perturbation of the lipid head groups in the presence of the icosapeptide. Simulation of the 31P NMR spectra indicated that the obser...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00347a019

    authors: Banerjee U,Zidovetzki R,Birge RR,Chan SI

    更新日期:1985-12-17 00:00:00

  • Conformations of cytochrome oxidase: thermodynamic evaluation of the interconversion of the 418- and 428-nm forms.

    abstract::Oxidized cytochrome c oxidase exists in two reasonably well-defined conformations, a high-spin conformation with maximal absorption at 418 nm and a low-spin conformation with maximal absorption at 428 nm. The equilibrium between these two conformations has been studied as a function of pH, pressure, and temperature. p...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00265a009

    authors: Kornblatt JA,Hui Bon Hoa G

    更新日期:1982-10-26 00:00:00

  • Two promoters in the bovine adrenodoxin gene and the role of associated, unique cAMP-responsive sequences.

    abstract::The bovine adrenodoxin gene gives rise to two species of mRNA differing only at their 5'-ends. The synthesis of these two types of mRNA in bovine adrenal cortical cells is regulated transcriptionally in part by ACTH via the action of cAMP. Examination of the 5'-end of the adrenodoxin gene revealed that each mRNA conta...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00123a027

    authors: Chen JY,Waterman MR

    更新日期:1992-03-03 00:00:00

  • Time-resolved absorption and emission show that the CP43' antenna ring of iron-stressed synechocystis sp. PCC6803 is efficiently coupled to the photosystem I reaction center core.

    abstract::Excitation energy transfer and trapping processes in an iron stress-induced supercomplex of photosystem I from the cyanobacterium Synechocystis sp. PCC6803 were studied by time-resolved absorption and fluorescence spectroscopy on femtosecond and picosecond time scales. The data provide evidence that the energy transfe...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi026987u

    authors: Melkozernov AN,Bibby TS,Lin S,Barber J,Blankenship RE

    更新日期:2003-04-08 00:00:00

  • Structure-based design of an indolicidin peptide analogue with increased protease stability.

    abstract::Indolicidin is an antimicrobial cationic peptide with broad-spectrum activity isolated from bovine neutrophils. An indolicidin analogue CP-11, ILKKWPWWPWRRK-NH(2), with improved activity against Gram-negative bacteria had increased positive charge and amphipathicity while maintaining the short length of the parent mol...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi035643g

    authors: Rozek A,Powers JP,Friedrich CL,Hancock RE

    更新日期:2003-12-09 00:00:00

  • Heme synthase (ferrochelatase) catalyzes the removal of iron from heme and demetalation of metalloporphyrins.

    abstract::The red pigments in meat products, including cooked cured ham, arise from the reaction of myoglobin with nitric oxide generated from exogenous nitrite. Since carcinogenic nitrosoamines may be generated by the treatment of meats with nitrite, the production of nitrite-free meat products is an attractive alternative. Ra...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi701460x

    authors: Taketani S,Ishigaki M,Mizutani A,Uebayashi M,Numata M,Ohgari Y,Kitajima S

    更新日期:2007-12-25 00:00:00

  • Limited proteolysis of human von Willebrand factor by Staphylococcus aureus V-8 protease: isolation and partial characterization of a platelet-binding domain.

    abstract::Purified human von Willebrand factor (vWF) was digested with Staphylococcus aureus V-8 protease, and specific domains interacting with platelets were isolated and characterized. Amino acid sequence analysis and sodium dodecyl sulfate gel electrophoresis demonstrated that the digestion proceeded primarily by a single c...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00359a013

    authors: Girma JP,Chopek MW,Titani K,Davie EW

    更新日期:1986-06-03 00:00:00

  • The relationship between ligand aggregation and G-quadruplex DNA selectivity in a series of 3,4,9,10-perylenetetracarboxylic acid diimides.

    abstract::Human telomeres are comprised of d(TTAGGG) repeats that are capable of forming G-quadruplex DNA structures. Ligands that bind to and stabilize these G-quadruplex DNA structures are potential inhibitors of the cancer cell-associated enzyme telomerase. Other potential biological uses of G-quadruplex targeting ligands ha...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0263107

    authors: Kern JT,Thomas PW,Kerwin SM

    更新日期:2002-09-24 00:00:00

  • Seipin is a discrete homooligomer.

    abstract::Seipin is a transmembrane protein that resides in the endoplasmic reticulum and concentrates at junctions between the ER and cytosolic lipid droplets. Mutations in the human seipin gene, including the missense mutation A212P, lead to congenital generalized lipodystrophy (CGL), characterized by the lack of normal adipo...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi1013003

    authors: Binns D,Lee S,Hilton CL,Jiang QX,Goodman JM

    更新日期:2010-12-21 00:00:00

  • Synthesis of HPr(Ser-P)(His-P) by enzyme I of the phosphoenolpyruvate: sugar phosphotransferase system of Streptococcus salivarius.

    abstract::HPr is a protein of the bacterial phosphoenolpyruvate:sugar phosphotransferase transport system (PTS). In Gram-positive bacteria, HPr can be phosphorylated on Ser(46) by HPr(Ser) kinase/phosphorylase (HPrK/P) and on His(15) by enzyme I (EI) of the PTS. In vitro studies have shown that phosphorylation on one residue gr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi060278p

    authors: Casabon I,Couture M,Vaillancourt K,Vadeboncoeur C

    更新日期:2006-05-30 00:00:00

  • Mechanism of inhibition of the (Ca2(+)-Mg2+)-ATPase by nonylphenol.

    abstract::The effects of nonylphenol and 3,5-dibutyl-4-hydroxytoluene (BHT) on the activity of the (Ca2(+)-Mg2+)-ATPase of skeletal muscle sarcoplasmic reticulum have been studied. At high concentrations, both inhibit the ATPase activity of the ATPase either in native lipid or in bilayers of dioleoylphosphatidylcholine but, at ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00464a028

    authors: Michelangeli F,Orlowski S,Champeil P,East JM,Lee AG

    更新日期:1990-03-27 00:00:00

  • Catalytic mechanism of enterococcal kanamycin kinase (APH(3')-IIIa): viscosity, thio, and solvent isotope effects support a Theorell-Chance mechanism.

    abstract::Bacterial resistance to the aminoglycoside antibiotics is manifested primarily through the production of enzymes which covalently modify these drugs. The Enterococci and Staphylococci produce an ATP-dependent kinase, APH(3')-IIIa, which phosphorylates such antibiotics as kanamycin, amikacin, and neomycin, and this enz...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9603884

    authors: McKay GA,Wright GD

    更新日期:1996-07-02 00:00:00

  • X-ray crystallographic and biochemical characterization of the inhibitory action of an imidazole-dioxolane compound on heme oxygenase.

    abstract::Heme oxygenase (HO) catalyzes the regiospecific cleavage of the porphyrin ring of heme using reducing equivalents and O2 to produce biliverdin, iron, and CO. Because CO has a cytoprotective effect through the p38-MAPK pathway, HO is a potential therapeutic target in cancer. In fact, inhibition of the HO isoform HO-1 r...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi062264p

    authors: Sugishima M,Higashimoto Y,Oishi T,Takahashi H,Sakamoto H,Noguchi M,Fukuyama K

    更新日期:2007-02-20 00:00:00

  • Dynamics of Aromatic Side Chains in the Active Site of FKBP12.

    abstract::FKBP12, a small human enzyme, aids protein folding by catalyzing cis-trans isomerization of peptidyl-prolyl bonds, and is involved in cell signaling pathways, calcium regulation, and the immune response. The underlying molecular mechanisms are not fully understood, but it is well-known that aromatic residues in the ac...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.6b01157

    authors: Weininger U,Modig K,Geitner AJ,Schmidpeter PA,Koch JR,Akke M

    更新日期:2017-01-10 00:00:00

  • A calcium-specific site influences the structure and activity of the manganese cluster responsible for photosynthetic water oxidation.

    abstract::EPR studies have revealed that removal of calcium using citric acid from the site in spinach photosystem II which is coupled to the photosynthetic O2-evolving process produces a structural change in the manganese cluster responsible for water oxidation. If done in the dark, this yields a modified S1' oxidation state w...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00450a032

    authors: Sivaraja M,Tso J,Dismukes GC

    更新日期:1989-11-28 00:00:00

  • Surface-enhanced resonance raman scattering spectroscopy of bacterial photosynthetic membranes: orientation of the carotenoids of Rhodobacter sphaeroides 2.4.1.

    abstract::Surface-enhanced resonance Raman scattering (SERRS) spectra were obtained from carotenoids, in the all-trans configuration, located on the antenna complexes of Rhodobacter sphaeroides 2.4.1 membranes. Since resonance Raman (RR) spectra are barely detectable at the concentration that SERRS signals saturate, SERRS repre...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00455a017

    authors: Picorel R,Lu T,Holt RE,Cotton TM,Seibert M

    更新日期:1990-01-23 00:00:00

  • A distinctive RNA fold: the solution structure of an analogue of the yeast tRNAPhe T Psi C domain.

    abstract::The structure of an analogue of the yeast tRNAPhe T Psi C stem-loop has been determined by NMR spectroscopy and restrained molecular dynamics. The molecule contained the highly conserved modification ribothymidine at its naturally occurring position. The ribothymidine-modified T Psi C stem-loop is the product of the m...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi990118w

    authors: Koshlap KM,Guenther R,Sochacka E,Malkiewicz A,Agris PF

    更新日期:1999-07-06 00:00:00

  • Mapping of factor XIII solvent accessibility as a function of activation state using chemical modification methods.

    abstract::The transglutaminase Factor XIII (FXIII) catalyzes the formation of covalent cross-links between adjacent noncovalently associated fibrin chains in blood coagulation. The resulting covalently cross-linked hard clot is much more mechanically stable and resistant to proteolytic degradation. FXIII is activated by the ser...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi049260+

    authors: Turner BT Jr,Sabo TM,Wilding D,Maurer MC

    更新日期:2004-08-03 00:00:00

  • Phospholipase Cβ3 Membrane Adsorption and Activation Are Regulated by Its C-Terminal Domains and Phosphatidylinositol 4,5-Bisphosphate.

    abstract::Phospholipase Cβ (PLCβ) enzymes hydrolyze phosphatidylinositol 4,5-bisphosphate to produce second messengers that regulate intracellular Ca2+, cell proliferation, and survival. Their activity is dependent upon interfacial activation that occurs upon localization to cell membranes. However, the molecular basis for how ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.7b00547

    authors: Hudson BN,Hyun SH,Thompson DH,Lyon AM

    更新日期:2017-10-17 00:00:00

  • Formylglycinamide ribonucleotide synthetase from Escherichia coli: cloning, sequencing, overproduction, isolation, and characterization.

    abstract::The purL gene of Escherichia coli encoding the enzyme formylglycinamidine ribonucleotide (FGAM) synthetase which catalyzes the conversion of formylglycinamide ribonucleotide (FGAR), glutamine, and MgATP to FGAM, glutamate, ADP, and Pi has been cloned and sequenced. The mature protein, as deduced by the structural gene...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00432a017

    authors: Schendel FJ,Mueller E,Stubbe J,Shiau A,Smith JM

    更新日期:1989-03-21 00:00:00

  • Evidence from base-pair kinetics for two types of adenine tract structures in solution: their relation to DNA curvature.

    abstract::We have measured the base-pair lifetimes in oligodeoxynucleotides containing tracts of A.T base pairs using imino proton magnetic resonance. When the tract contains more than four consecutive A.T base pairs, possibly including a 5'-AT step but not a 5'-TA step, anomalously long lifetimes are observed. For example, the...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00425a004

    authors: Leroy JL,Charretier E,Kochoyan M,Guéron M

    更新日期:1988-12-13 00:00:00

  • Ia-associated invariant chain is fatty acylated before addition of sialic acid.

    abstract::The murine invariant chain (Ii) was found to incorporate radioactive palmitic acid. This binding of fatty acid inhibits the formation of interchain S-S bonds, probably because the cysteine residue in the transmembrane region of the Ii chain is palmitylated. The inhibition of fatty acylation by cerulenin blocks further...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00343a023

    authors: Koch N,Hämmerling GJ

    更新日期:1985-10-22 00:00:00