Gene identification by arrested primer extension.

Abstract:

:This paper reports a novel method for the identification of nucleic acid target sequences when these targets have high sequence identity. Homologous genes are currently identified by sequencing. We hypothesize that by primer extension in the presence of selected nucleotides, genes with similar sequence can be identified by the length of the extension products on gel electrophoresis. This simple procedure eliminates the much-demanding process of sequencing. We term this process Arrested Primer Extension (APE). As a demonstration of the feasibility of this method, we have used APE to speciate a known set of cultured mycobacteria. There should be many other applications of this method.

journal_name

Biotechniques

journal_title

BioTechniques

authors

Sandhu GS,Kline BC,Bolander ME,Sarkar G

subject

Has Abstract

pub_date

1993-06-01 00:00:00

pages

948-52

issue

6

eissn

0736-6205

issn

1940-9818

journal_volume

14

pub_type

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  • Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material.

    abstract::Procedures utilizing Chelex 100 chelating resin have been developed for extracting DNA from forensic-type samples for use with the PCR. The procedures are simple, rapid, involve no organic solvents and do not require multiple tube transfers for most types of samples. The extraction of DNA from semen and very small blo...

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    authors: Walsh PS,Metzger DA,Higuchi R

    更新日期:1991-04-01 00:00:00

  • A simple microfluidic device for live cell imaging of Arabidopsis cotyledons, leaves, and seedlings.

    abstract::One of the challenges of performing live-cell imaging in plants is establishing a system for securing the sample during imaging that allows for the rapid addition of treatments. Here we report how a commercially available device called a HybriWell™ can be repurposed to create an imaging chamber suitable for Arabidopsi...

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    doi:10.2144/btn-2018-0044

    authors: Vang S,Seitz K,Krysan PJ

    更新日期:2018-06-01 00:00:00

  • PART I: FIGHTING CANCER WITH DEADLY BACTERIA.

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    authors: Nybo K

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    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:

    authors: Robison TW,Dorio RJ,Kim KJ

    更新日期:1993-09-01 00:00:00

  • Budding yeast as a screening tool for discovery of nucleoside analogs for use in HSV-1 TK suicide-gene therapy.

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    doi:10.2144/99274st08

    authors: Wera S,Degrève B,Balzarini J,De Clercq E,Thevelein JM,Neyts J

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    abstract::We describe a novel assay format for the Gal4-based yeast two-hybrid-system, in which the readout from three different reporter genes is measured sequentially in a single microplate. Activation of the URA3, MEL1, and lacZ reporters in response to a protein-protein interaction is monitored by measuring sequentially: (i...

    journal_title:BioTechniques

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    doi:10.2144/04375PT02

    authors: Evans DR,Swirsding KA,Taillon BE,Simons JF

    更新日期:2004-11-01 00:00:00

  • Profiling the HeLa S3 transcriptome using randomly primed cDNA and massively parallel short-read sequencing.

    abstract::Sequence-based methods for transcriptome characterization have typically relied on generation of either serial analysis of gene expression tags or expressed sequence tags. Although such approaches have the potential to enumerate transcripts by counting sequence tags derived from them, they typically do not robustly su...

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    authors: Morin R,Bainbridge M,Fejes A,Hirst M,Krzywinski M,Pugh T,McDonald H,Varhol R,Jones S,Marra M

    更新日期:2008-07-01 00:00:00

  • S-Gal: an autoclavable dye for color selection of cloned DNA inserts.

    abstract::Blue/white selection is the standard method for detecting a cloned DNA fragment. In the absence of an insert, uninterrupted expression of the vector-encoded alpha-complement of beta-galactosidase (beta-gal), results in the hydrolysis of X-gal (5-bromo-4-chloro-3-indolyl-beta-D-galactoside) and the subsequent blue stai...

    journal_title:BioTechniques

    pub_type: 杂志文章

    doi:10.2144/01305pf01

    authors: Heuermann K,Cosgrove J

    更新日期:2001-05-01 00:00:00

  • Enhanced assessment of contractile dynamics in Drosophila hearts.

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    doi:10.2144/000114255

    authors: Cammarato A,Ocorr S,Ocorr K

    更新日期:2015-02-01 00:00:00

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    authors: Rueden CT,Eliceiri KW

    更新日期:2007-07-01 00:00:00

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    authors: Gorman SW,Roberts-Oehlschlager SL,Cullis CA,Teasdale RD

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    journal_title:BioTechniques

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    authors: Chomczynski P,Mackey K

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    authors: Bates MK,Zhang G,Sebestyén MG,Neal ZC,Wolff JA,Herweijer H

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    journal_title:BioTechniques

    pub_type:

    doi:

    authors: Dorin M,Bornecque CA

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  • Green fluorescent protein as a reporter of gene expression and protein localization.

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    doi:

    authors: Kain SR,Adams M,Kondepudi A,Yang TT,Ward WW,Kitts P

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    pub_type: 杂志文章

    doi:

    authors: Schwenk JM,Stoll D,Templin MF,Joos TO

    更新日期:2002-12-01 00:00:00