6-alkynyl fucose is a bioorthogonal analog for O-fucosylation of epidermal growth factor-like repeats and thrombospondin type-1 repeats by protein O-fucosyltransferases 1 and 2.

Abstract:

:Protein O-fucosyltransferase 1 (Pofut1) and protein O-fucosyltransferase 2 (Pofut2) add O-linked fucose at distinct consensus sequences in properly folded epidermal growth factor (EGF)-like repeats and thrombospondin type-1 (TSR) repeats, respectively. Glycan chain elongation past O-fucose can occur to yield a tetrasaccharide on EGF repeats and a disaccharide on TSRs. Elimination of Pofut1 in mice causes embryonic lethality with Notch-like phenotypes demonstrating that O-fucosylation of Notch is essential for its function. Similarly, elimination of Pofut2 results in an early embryonic lethal phenotype in mice, although the molecular mechanism for the lethality is unknown. The recent development of sugar analogs has revolutionized the study of glycans by providing a convenient method for labeling and tracking glycosylation. In order to study O-fucosylation, we took advantage of the recently developed reporter, 6-alkynyl fucose. Using the Cu(I)-catalyzed azide-alkyne cycloaddition (CuAAC), or "click" reaction, azido-biotin allows tagging and detection of 6AF-modified proteins. Here we examine whether proteins containing EGF repeats or TSRs with O-fucose consensus sequences are specifically modified with 6AF in cell culture. Using mass spectrometry (MS), we demonstrate that 6AF is efficiently incorporated onto the appropriate consensus sequences on EGF repeats and TSRs. Furthermore, the elongation of the O-fucose monosaccharide on EGF repeats and TSRs is not hampered when 6AF is used. These results show that 6AF is efficiently utilized in a truly bioorthogonal manner by Pofut1, Pofut2 and the enzymes that elongate O-fucose, providing evidence that 6AF is a significant new tool in the study of protein O-fucosylation.

journal_name

Glycobiology

journal_title

Glycobiology

authors

Al-Shareffi E,Chaubard JL,Leonhard-Melief C,Wang SK,Wong CH,Haltiwanger RS

doi

10.1093/glycob/cws140

subject

Has Abstract

pub_date

2013-02-01 00:00:00

pages

188-98

issue

2

eissn

0959-6658

issn

1460-2423

pii

cws140

journal_volume

23

pub_type

杂志文章
  • Human sialidase NEU4 long and short are extrinsic proteins bound to outer mitochondrial membrane and the endoplasmic reticulum, respectively.

    abstract::Sialidases are widely distributed glycohydrolytic enzymes removing sialic acid residues from glycoconjugates. In mammals, several sialidases with different subcellular localizations and biochemical features have been described. NEU4, the most recently identified member of the human sialidase family, is found in two fo...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/cwp156

    authors: Bigi A,Morosi L,Pozzi C,Forcella M,Tettamanti G,Venerando B,Monti E,Fusi P

    更新日期:2010-02-01 00:00:00

  • Macrophage polarization alters the expression and sulfation pattern of glycosaminoglycans.

    abstract::Macrophages are major cells of inflammatory process and take part in a large number of physiological and pathological processes. According to tissue environment, they can polarize into pro-inflammatory (M1) or alternative (M2) cells. Although many evidences have hinted to a potential role of cell-surface glycosaminogl...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/cwu137

    authors: Martinez P,Denys A,Delos M,Sikora AS,Carpentier M,Julien S,Pestel J,Allain F

    更新日期:2015-05-01 00:00:00

  • Prevention of the death of the rat axotomized hypoglossal nerve and promotion of its regeneration by bovine brain gangliosides.

    abstract::We have examined the time course of the neuronal death and regeneration of rat axotomized hypoglossal nerve with various conditions of the nerve resection, and established a useful system to measure neurotrophic activities of bioactive substances. In this system, neuronal death can be evaluated by counting surviving n...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/9.11.1247

    authors: Itoh M,Fukumoto S,Baba N,Kuga Y,Mizuno A,Furukawa K

    更新日期:1999-11-01 00:00:00

  • Arabidopsis thaliana ALG3 mutant synthesizes immature oligosaccharides in the ER and accumulates unique N-glycans.

    abstract::The core oligosaccharide Glc(3)Man(9)GlcNAc(2) is assembled by a series of membrane-bound glycosyltransferases as the lipid carrier dolichylpyrophosphate-linked glycan in the endoplasmic reticulum (ER). The first step of this assembly pathway on the ER luminal side is mediated by ALG3 (asparagine-linked glycosylation ...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/cwq028

    authors: Kajiura H,Seki T,Fujiyama K

    更新日期:2010-06-01 00:00:00

  • Apiose: one of nature's witty games.

    abstract::Apiose is a unique branched-chain pentose found principally in plants. It is a key component of structurally complex cell wall polysaccharides, as well as being present in a large number of naturally occurring secondary metabolites. This review provides a comprehensive overview of the current state of knowledge on the...

    journal_title:Glycobiology

    pub_type: 杂志文章,评审

    doi:10.1093/glycob/cww012

    authors: Pičmanová M,Møller BL

    更新日期:2016-05-01 00:00:00

  • Incorporation of 15N from ammonium into the N-linked oligosaccharides of an immunoadhesin glycoprotein expressed in Chinese hamster ovary cells.

    abstract::Elevated ammonium concentrations in the medium of cultivated cells have been shown to increase the intracellular levels of uridine-5'-diphospho-N-acetylglucosamine (UDP-GlcNAc) and uridine-5'-diphospho-N-acetylgalactosamine (UDP-GalNAc; Ryll et al., 1994). These sugar nucleotides are substrates for glycosyltransferase...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/9.2.125

    authors: Gawlitzek M,Papac DI,Sliwkowski MB,Ryll T

    更新日期:1999-02-01 00:00:00

  • High-resolution structural insights on the sugar-recognition and fusion tag properties of a versatile β-trefoil lectin domain from the mushroom Laetiporus sulphureus.

    abstract::In this work, we analyzed at high resolution the sugar-binding mode of the recombinant N-terminal ricin-B domain of the hemolytic protein LSLa (LSL(150)) from the mushroom Laetiporus sulphureus and also provide functional in vitro evidence suggesting that, together with its putative receptor-binding role, this module ...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/cwr074

    authors: Angulo I,Acebrón I,de las Rivas B,Muñoz R,Rodríguez-Crespo I,Menéndez M,García P,Tateno H,Goldstein IJ,Pérez-Agote B,Mancheño JM

    更新日期:2011-10-01 00:00:00

  • Reconstructed glycan profile for evaluation of operating status of the endoplasmic reticulum glycoprotein quality control.

    abstract::Glycoprotein oligosaccharides function as tags for protein quality control in the endoplasmic reticulum (ER). Since most of proteins are glycosylated and function only after they are properly folded, glycoprotein glycan profiles in the ER might be useful to analyze various cellular status including diseases. Here, we ...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/cws130

    authors: Iwamoto S,Isoyama M,Hirano M,Yamaya K,Ito Y,Matsuo I,Totani K

    更新日期:2013-01-01 00:00:00

  • The structure of the Mycobacterium smegmatis trehalose synthase reveals an unusual active site configuration and acarbose-binding mode.

    abstract::Trehalose synthase (TreS) catalyzes the reversible conversion of maltose into trehalose in mycobacteria as one of three biosynthetic pathways to this nonreducing disaccharide. Given the importance of trehalose to survival of mycobacteria, there has been considerable interest in understanding the enzymes involved in it...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/cwt044

    authors: Caner S,Nguyen N,Aguda A,Zhang R,Pan YT,Withers SG,Brayer GD

    更新日期:2013-09-01 00:00:00

  • Impact of sialyltransferase ST6GAL1 overexpression on different colon cancer cell types.

    abstract::Cancer-associated glycan structures can be both tumor markers and engines of disease progression. The structure Siaα2,6Galβ1,4GlcNAc (Sia6LacNAc), synthesized by sialyltransferase ST6GAL1, is a cancer-associated glycan. Although ST6GAL1/Sia6LacNAc are often overexpressed in colorectal cancer (CRC), their biological an...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/cwz053

    authors: Venturi G,Gomes Ferreira I,Pucci M,Ferracin M,Malagolini N,Chiricolo M,Dall'Olio F

    更新日期:2019-09-20 00:00:00

  • Virus-induced appearance of the selectin ligand sLeX in herpes simplex virus type 1-infected T-cells: involvement of host and viral factors.

    abstract::Circulating leukocytes that express selectin ligands such as the carbohydrate epitope sialyl Lewis X (sLeX) may interact with endothelial selectins, resulting in transmigration of the leukocyte across the endothelial wall to adjacent tissue. Due to the potential of selectin-ligand interactions as targets in viral path...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/cws160

    authors: Nordén R,Nyström K,Aurelius J,Brisslert M,Olofsson S

    更新日期:2013-03-01 00:00:00

  • Computational analysis of multivalency in lectins: structures of garlic lectin-oligosaccharide complexes and their aggregates.

    abstract::Multivalency in lectins is a phenomenon that has been discussed at considerable length. The structural basis for the role of multivalency in garlic lectin has been investigated here through computational studies. Biochemical studies have shown that the binding affinity of garlic lectin for high mannose oligosaccharide...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/cwg095

    authors: Ramachandraiah G,Chandra NR,Surolia A,Vijayan M

    更新日期:2003-11-01 00:00:00

  • beta 1,4-Galactosyltransferase activity in B cells detected using a simple ELISA-based assay.

    abstract::Lymphocytic beta 1,4-galactosyltransferase (beta 1,4-GalTase, EC 2.4.1.38) activity was measured in B cells using a neoglyco-protein, N-acetylglucosamine-phenylisothiocyanate-bovine serum albumin (GlcNAc-pITC-BSA), as an acceptor substrate in a novel enzyme-linked immunosorbent assay (ELISA)-based method. This assay p...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/5.4.365

    authors: Keusch J,Lydyard PM,Isenberg DA,Delves PJ

    更新日期:1995-06-01 00:00:00

  • Modification of sphingoglycolipids and sulfolipids in kidney cell lines under heat stress: activation of monohexosylceramide synthesis as a ceramide scavenger.

    abstract::Heat stress on Madin-Darby canine kidney cells increased ceramide content to 187% at 40 degrees C for 24 h, and the de novo synthesis from serine increased to 146%. Glucosylceramide (GlcCer) and galactosylceramide (GalCer) synthesis from ceramide, the first glycosylation step of sphingolipid metabolism in kidney cells...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/cwq018

    authors: Niimura Y,Moue T,Takahashi N,Nagai K

    更新日期:2010-06-01 00:00:00

  • The biosynthesis of Lewis X in Helicobacter pylori.

    abstract::The biosynthesis of the Lewis X determinant (Gal beta 1-4 [Fuc alpha 1-3]GlcNAc beta-) in three strains of Helicobacter pylori has been investigated. Strains UA 861, UA 802 and UA 1182 contain alpha 1,3 fucosyltransferase and beta 1,4 galactosyltransferase activities that synthesize the Lewis X structure by the transf...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/5.7.683

    authors: Chan NW,Stangier K,Sherburne R,Taylor DE,Zhang Y,Dovichi NJ,Palcic MM

    更新日期:1995-10-01 00:00:00

  • Galectin-3 binds selectively to the terminal, non-reducing end of β(1→4)-galactans, with overall affinity increasing with chain length.

    abstract::Galactans are linear polysaccharides of β(1→4)-linked galactose residues. Although they can antagonize galectin function, the nature of their binding to galectins needs to be better defined to develop them as drugs. Here, we investigated interactions between galectin-3 (Gal-3) and a series of galactans ranging in weig...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/cwy085

    authors: Miller MC,Zheng Y,Zhou Y,Tai G,Mayo KH

    更新日期:2019-01-01 00:00:00

  • β4GalT6 is involved in the synthesis of lactosylceramide with less intensity than β4GalT5.

    abstract::Glycosphingolipids are expressed on the cell membrane and act as important factors in various events that occur across the plasma membrane. Lactosylceramide (LacCer) is synthesized from glucosylceramide and is a common precursor of various glycosphingolipids existing in whole body. Based on the enzyme purification, β1...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/cwt054

    authors: Tokuda N,Numata S,Li X,Nomura T,Takizawa M,Kondo Y,Yamashita Y,Hashimoto N,Kiyono T,Urano T,Furukawa K,Furukawa K

    更新日期:2013-10-01 00:00:00

  • Modulation of hepatocyte sialylation drives spontaneous fatty liver disease and inflammation.

    abstract::Circulatory protein glycosylation is a biomarker of multiple disease and inflammatory states and has been applied in the clinic for liver dysfunction, heart disease and diabetes. With the notable exception of antibodies, the liver produces most of the circulatory glycoproteins, including the acute phase proteins relea...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/cwz096

    authors: Oswald DM,Jones MB,Cobb BA

    更新日期:2020-04-20 00:00:00

  • Tn and STn are members of a family of carbohydrate tumor antigens that possess carbohydrate-carbohydrate interactions.

    abstract::The mucin-type O-glycome in cancer aberrantly expresses the truncated glycans Tn (GalNAcα1-Ser/Thr) and STn (Neu5Acα2,6GalNAcα1-Ser/Thr). However, the role of Tn and STn in cancer and other diseases is not well understood. Our recent discovery of the self-binding properties (carbohydrate-carbohydrate interactions, CCI...

    journal_title:Glycobiology

    pub_type: 杂志文章,评审

    doi:10.1093/glycob/cwy032

    authors: Sletmoen M,Gerken TA,Stokke BT,Burchell J,Brewer CF

    更新日期:2018-07-01 00:00:00

  • Identification of alg3 in the mushroom-forming fungus Schizophyllum commune and analysis of the Δalg3 knockout mutant.

    abstract::Alg3 of Saccharomyces cerevisiae catalyzes the mannosyl transfer from Man-P-Dol to Man(5)GlcNAc(2)-PP-Dol resulting in the formation of Man(6)GlcNAc(2)-PP-Dol, which is then further processed to the final precursor oligosaccharide Glc(3)Man(9)GlcNAc(2) for N-glycosylation of proteins. Here, we identified the alg3 gene...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/cws135

    authors: Berends E,Lehle L,Henquet M,Hesselink T,Wösten HA,Lugones LG,Bosch D

    更新日期:2013-02-01 00:00:00

  • Composition and structure elucidation of human milk glycosaminoglycans.

    abstract::To date, there is no complete structural characterization of human milk glycosaminoglycans (GAGs) available nor do any data exist on their composition in bovine milk. Total GAGs were determined on extracts from human and bovine milk. Samples were subjected to digestion with specific enzymes, treated with nitrous acid,...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/cwq164

    authors: Coppa GV,Gabrielli O,Buzzega D,Zampini L,Galeazzi T,Maccari F,Bertino E,Volpi N

    更新日期:2011-03-01 00:00:00

  • Significant structural change in both O- and N-linked carbohydrate moieties of the antigenic galactomannan from Aspergillus fumigatus grown under different culture conditions.

    abstract::Invasive aspergillosis is an important cause of morbidity and mortality in immunocompromised patients. Diagnosis of this infection frequently employs detection of the circulating galactomannan in the patient serum using enzyme immunoassay (EIA), a highly sensitive and specific system. Although there are many structura...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/cwu091

    authors: Kudoh A,Okawa Y,Shibata N

    更新日期:2015-01-01 00:00:00

  • The annotation of the asparagine N-linked glycosylation pathway in the Reactome database.

    abstract::Asparagine N-linked glycosylation is one of the most important forms of protein post-translational modification in eukaryotes and is one of the first metabolic pathways described at a biochemical level. Here, we report a new annotation of this pathway for the Human species, published after passing a peer-review proces...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/cwq215

    authors: Dall'Olio GM,Jassal B,Montanucci L,Gagneux P,Bertranpetit J,Laayouni H

    更新日期:2011-11-01 00:00:00

  • Successive glycosyltransfer of sialic acid by Escherichia coli K92 polysialyltransferase in elongation of oligosialic acceptors.

    abstract::Escherichia coli K92 produces a capsular polysialic acid with alternating alpha2,8 alpha2,9 NeuNAc linkages. This polysaccharide is cross-reactive with the neuroinvasive pathogen Neisseria meningitidis Group C. The K92 polysialyltransferase (PST) catalyzes the synthesis of the polysialic acid with alternating linkages...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/cwm032

    authors: Vionnet J,Vann WF

    更新日期:2007-07-01 00:00:00

  • Strict specificity for high-mannose type N-glycans and primary structure of a red alga Eucheuma serra lectin.

    abstract::We have elucidated the carbohydrate-binding profile of a non-monosaccharide-binding lectin named Eucheuma serra lectin (ESA)-2 from the red alga Eucheuma serra using a lectin-immobilized column and a centrifugal ultrafiltration-high performance liquid chromatography method with a variety of fluorescence-labeled oligos...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/cwm007

    authors: Hori K,Sato Y,Ito K,Fujiwara Y,Iwamoto Y,Makino H,Kawakubo A

    更新日期:2007-05-01 00:00:00

  • A conserved DGGK motif is essential for the function of the PglB oligosaccharyltransferase from Campylobacter jejuni.

    abstract::In Campylobacter jejuni, the PglB oligosaccharyltransferase catalyzes the transfer of a heptasaccharide from a lipid donor to asparagine within the D/E-X1-N-X2-S/T sequon (X1,2 ≠ P) or releases this heptasaccharide as free oligosaccharides (fOS). Using available crystal structures and sequence alignments, we identifie...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/cwx067

    authors: Barre Y,Nothaft H,Thomas C,Liu X,Li J,Ng KKS,Szymanski CM

    更新日期:2017-10-01 00:00:00

  • Structural basis for selective cross-reactivity in a bactericidal antibody against inner core lipooligosaccharide from Neisseria meningitidis.

    abstract::The structure of a antigen-binding fragment (Fab) from the bactericidal monoclonal antibody LPT3-1 specific to lipooligosaccharide (LOS) inner cores from Neisseria meningitidis has been solved in complex with an eight-sugar inner core fragment NmL3 galE lpt3 KOH to 2.69 Å resolution. The epitope is centered about an i...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/cwu009

    authors: Parker MJ,Gomery K,Richard G,MacKenzie CR,Cox AD,Richards JC,Evans SV

    更新日期:2014-05-01 00:00:00

  • Prevalence of the F-type lectin domain.

    abstract::F-type lectins are fucolectins with characteristic fucose and calcium-binding sequence motifs and a unique lectin fold (the "F-type" fold). F-type lectins are phylogenetically widespread with selective distribution. Several eukaryotic F-type lectins have been biochemically and structurally characterized, and the F-typ...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/cwv029

    authors: Bishnoi R,Khatri I,Subramanian S,Ramya TN

    更新日期:2015-08-01 00:00:00

  • Structural analysis of oligosaccharide-alditols released by reductive beta-elimination from oviducal mucins of Bufo bufo: characterization of the carbohydrate sequence Gal(alpha1-3)GalNAc(alpha1-3)[Fuc(alpha1-2)]Gal.

    abstract::Several tri- to hexasaccharide-alditols of the jelly coat surrounding the eggs of Bufo bufo were studied by methylation analysis, MALDI-TOF mass spectrometry, and 1H-NMR spectroscopy. As observed for six other amphibian species, these carbohydrate chains are highly species-specific. The main characteristics of the spe...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/7.6.777

    authors: Morelle W,Strecker G

    更新日期:1997-09-01 00:00:00

  • Structure determination by MALDI-IRMPD mass spectrometry and exoglycosidase digestions of O-linked oligosaccharides from Xenopus borealis egg jelly.

    abstract::Differences in the fertilization behavior of Xenopus borealis from X. laevis and X. tropicalis suggest differences in the glycosylation of the egg jellies. To test this assumption, O-linked glycans were chemically released from the egg jelly coat glycoproteins of X. borealis. Over 50 major neutral glycans were observe...

    journal_title:Glycobiology

    pub_type: 杂志文章

    doi:10.1093/glycob/cwr003

    authors: Li B,Russell SC,Zhang J,Hedrick JL,Lebrilla CB

    更新日期:2011-07-01 00:00:00