Reduction of the [2Fe-2S] cluster accompanies formation of the intermediate 9-mercaptodethiobiotin in Escherichia coli biotin synthase.

Abstract:

:Biotin synthase catalyzes the conversion of dethiobiotin (DTB) to biotin through the oxidative addition of sulfur between two saturated carbon atoms, generating a thiophane ring fused to the existing ureido ring. Biotin synthase is a member of the radical SAM superfamily, composed of enzymes that reductively cleave S-adenosyl-l-methionine (SAM or AdoMet) to generate a 5'-deoxyadenosyl radical that can abstract unactivated hydrogen atoms from a variety of organic substrates. In biotin synthase, abstraction of a hydrogen atom from the C9 methyl group of DTB would result in formation of a dethiobiotinyl methylene carbon radical, which is then quenched by a sulfur atom to form a new carbon-sulfur bond in the intermediate 9-mercaptodethiobiotin (MDTB). We have proposed that this sulfur atom is the μ-sulfide of a [2Fe-2S](2+) cluster found near DTB in the enzyme active site. In the present work, we show that formation of MDTB is accompanied by stoichiometric generation of a paramagnetic FeS cluster. The electron paramagnetic resonance (EPR) spectrum is modeled as a 2:1 mixture of components attributable to different forms of a [2Fe-2S](+) cluster, possibly distinguished by slightly different coordination environments. Mutation of Arg260, one of the ligands to the [2Fe-2S] cluster, causes a distinctive change in the EPR spectrum. Furthermore, magnetic coupling of the unpaired electron with (14)N from Arg260, detectable by electron spin envelope modulation (ESEEM) spectroscopy, is observed in WT enzyme but not in the Arg260Met mutant enzyme. Both results indicate that the paramagnetic FeS cluster formed during catalytic turnover is a [2Fe-2S](+) cluster, consistent with a mechanism in which the [2Fe-2S](2+) cluster simultaneously provides and oxidizes sulfide during carbon-sulfur bond formation.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Taylor AM,Stoll S,Britt RD,Jarrett JT

doi

10.1021/bi201042r

subject

Has Abstract

pub_date

2011-09-20 00:00:00

pages

7953-63

issue

37

eissn

0006-2960

issn

1520-4995

journal_volume

50

pub_type

杂志文章
  • Perturbation of the carboxy terminus of HIV-1 Rev affects multimerization on the Rev responsive element.

    abstract::Perturbations within the transactivation and carboxy-terminal domains of HIV-1 Rev were examined for effects on Rev responsive element (RRE) binding activities in vitro and biological activity in vivo. Binding affinities, specificities, and multimerization of the transactivation mutants M10 and Rev/Rex M10-16 on the R...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00085a028

    authors: Daly TJ,Rennert P,Lynch P,Barry JK,Dundas M,Rusche JR,Doten RC,Auer M,Farrington GK

    更新日期:1993-08-31 00:00:00

  • Targeted cleavage of polynucleotides by complementary oligonucleotides covalently linked to iron-porphyrins.

    abstract::Oligothymidylates covalently linked to iron-porphyrins were synthesized to target the nuclease activity of Fe-porphyrin to complementary polynucleotides. In the presence of oxygen and a reducing agent, oligo(dT)7 bearing the reactive group attached to the 3'-phosphate was shown to be active in the cleavage of poly(dA)...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00370a002

    authors: Le Doan T,Perrouault L,Helene C,Chassignol M,Thuong NT

    更新日期:1986-11-04 00:00:00

  • Location of the maltosyl isothiocyanate binding site on the human erythrocyte glucose transporter.

    abstract::The covalent affinity probe maltosyl isothiocyanate (MITC) has been used previously to identify the glucose transporter of human erythrocytes as a component of band 3. By use of limited proteolysis, the site on the Mr 100 000 protein to which MITC attaches has been localized to a 17 000-dalton region near the center o...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00331a001

    authors: Shelton RL Jr,Langdon RG

    更新日期:1985-05-07 00:00:00

  • Interactions of factor XIII with fibrin as substrate and cofactor.

    abstract::Factor XIIIa (a2') is a homodimeric transglutaminase that is formed via limited alpha-thrombin-catalyzed proteolysis of the platelet (a2) or plasma (a2b2) factor XIII zymogen in a reaction that results in proteolytic removal of a 37-aminoacyl residue peptide from the N-terminus of the a chains and exposure of the acti...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00117a017

    authors: Hornyak TJ,Shafer JA

    更新日期:1992-01-21 00:00:00

  • Determination of proton transfer rates by chemical rescue: application to bacterial reaction centers.

    abstract::The bacterial reaction center (RC) converts light into chemical energy through the reduction of an internal quinone molecule Q(B) to Q(B)H(2). In the native RC, proton transfer is coupled to electron transfer and is not rate-controlling. Consequently, proton transfer is not directly observable, and its rate was unknow...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi020419x

    authors: Paddock ML,Adelroth P,Feher G,Okamura MY,Beatty JT

    更新日期:2002-12-17 00:00:00

  • 1H NMR dipolar echo decay spectroscopy: a sensitive probe of membrane structure.

    abstract::The structural and motional properties of membrane lipids in various physical states and macroscopic organizations are elucidated by 1H NMR dipolar echo decay spectroscopy (DECODE). Multilamellar lipid dispersions in the gel (L beta') and liquid-crystalline (L alpha) states and a nonbilayer, hexagonal (HII) phase are ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00488a027

    authors: Janes N,Rubin E,Taraschi TF

    更新日期:1990-09-11 00:00:00

  • Ubiquitinated proteasome inhibitor is a component of the 26 S proteasome complex.

    abstract::Western blot analysis, using a polyclonal antibody to the 240-kDa endogenous inhibitor of the 20 S proteasome, revealed that the inhibitor is a component of the 26 S complex. Although isolated inhibitor displayed a single 40-kDa band on SDS-PAGE, the antibody detected a 55-kDa component in the 26 S proteasome complex....

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00163a001

    authors: Li XS,Etlinger JD

    更新日期:1992-12-08 00:00:00

  • Analysis of the structural core of the human estrogen receptor ligand binding domain by selective proteolysis/mass spectrometric analysis.

    abstract::The structure of the ca. 250 amino acid hormone binding domain of the human estrogen receptor (hER-LBD), expressed in E. coli and purified as a complex with estradiol, has been probed by selective proteolysis, with analysis of the protein fragments both by classical methods (SDS-PAGE and Edman N-terminal sequencing) a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00039a016

    authors: Seielstad DA,Carlson KE,Kushner PJ,Greene GL,Katzenellenbogen JA

    更新日期:1995-10-03 00:00:00

  • Cell-specific physical and functional coupling of human 5-HT1A receptors to inhibitory G protein alpha-subunits and lack of coupling to Gs alpha.

    abstract::We have studied the physical and functional linkages of heterologously expressed human 5-HT1A receptors to G protein alpha-subunits in HeLa and CHO-K1 cells. HeLa cells expressed immunoreactivity to G(i) proteins with an apparent rank order of G(i) alpha 3 (approximately 1 pmol/mg of protein) > G(i) alpha 1 (approxima...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00092a016

    authors: Raymond JR,Olsen CL,Gettys TW

    更新日期:1993-10-19 00:00:00

  • Oligomerization and ring closure of immunoglobulin E class antibodies by divalent haptens.

    abstract::Cross-linking of antibodies constitutes a widespread initiation signal for their respective effector functions. Cross-linking IgE-class antibodies provide the triggering signal to mast cells for their degranulation process. To obtain a quantitative insight into these cross-linking processes, the interactions between a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00386a053

    authors: Schweitzer-Stenner R,Licht A,Lüscher I,Pecht I

    更新日期:1987-06-16 00:00:00

  • Regulation of the expression of the β-lactam antibiotic-resistance determinants in methicillin-resistant Staphylococcus aureus (MRSA).

    abstract::β-Lactam antibiotics have faced obsolescence with the emergence of methicillin-resistant Staphylococcus aureus (MRSA). A complex set of events ensues upon exposure of MRSA to these antibiotics, which culminates in proteolysis of BlaI or MecI, two gene repressors, and results in the induction of resistance. We report s...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi500074w

    authors: Blázquez B,Llarrull LI,Luque-Ortega JR,Alfonso C,Boggess B,Mobashery S

    更新日期:2014-03-18 00:00:00

  • Differential expression of alternatively spliced forms of MAP4: a repertoire of structurally different microtubule-binding domains.

    abstract::We previously reported that the microtubule (MT)-binding domain of microtubule-associated protein 4 (MAP4) contains three 18-amino acid imperfect repeats that are homologous to the repeats found in the MT-binding domains of the neuronal MAPs, MAP2 and tau [Chapin, S. J., & Bulinski, J. C. (1991) J. Cell Sci. 98, 27-36...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00007a025

    authors: Chapin SJ,Lue CM,Yu MT,Bulinski JC

    更新日期:1995-02-21 00:00:00

  • Mechanism of recruitment and activation of the endosome-associated deubiquitinase AMSH.

    abstract::AMSH, a deubiquitinating enzyme (DUB) with exquisite specificity for Lys63-linked polyubiquitin chains, is an endosome-associated DUB that regulates sorting of activated cell-surface signaling receptors to the lysosome, a process mediated by the members of the endosomal sorting complexes required for transport (ESCRT)...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi401106b

    authors: Davies CW,Paul LN,Das C

    更新日期:2013-11-05 00:00:00

  • Inhibition of HIV protease activity by heterodimer formation.

    abstract::The dimeric nature of the HIV protease has been exploited to devise a novel mode of inhibiting the enzyme. The use of defective monomers or nonidentical subunits to exchange with wild-type homodimers produces catalytically defective heterodimers. Incubation of the HIV1 or HIV2 protease with a 4-fold molar excess of an...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00215a016

    authors: Babé LM,Pichuantes S,Craik CS

    更新日期:1991-01-08 00:00:00

  • Identification of multiple glucocorticoid receptor binding sites in the rat osteocalcin gene promoter.

    abstract::The biosynthesis of osteocalcin (OC), a bone-specific, noncollagenous protein, is stringently regulated during differentiation of the osteoblast phenotype. Glucocorticoids, and also 1,25(OH)2D3, mediate the developmental regulation of OC gene transcription. In this study, we established that the -1097 to +23 promoter ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00093a022

    authors: Heinrichs AA,Bortell R,Rahman S,Stein JL,Alnemri ES,Litwack G,Lian JB,Stein GS

    更新日期:1993-10-26 00:00:00

  • Solution structure of a band 3 peptide inhibitor bound to aldolase: a proposed mechanism for regulating binding by tyrosine phosphorylation.

    abstract::Human erythrocyte band 3 inhibits glycolytic enzymes, including aldolase, by binding these cytoplasmic enzymes at its N-terminus. Phosphorylation of Y8 disrupts inhibition, and there is evidence that in vivo glycolysis levels in erythrocytes are regulated in part by a phosphorylation/dephosphorylation signaling pathwa...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00051a005

    authors: Schneider ML,Post CB

    更新日期:1995-12-26 00:00:00

  • Recombinant expression and functional characterization of human hephaestin: a multicopper oxidase with ferroxidase activity.

    abstract::Human hephaestin (Hp) is a transmembrane protein that has been implicated in duodenal iron export. Mutations in the murine hephaestin gene (sla) produce microcytic, hypochromic anemia that is refractory to oral iron therapy. Hp shares approximately 50% sequence identity with the plasma multicopper ferroxidase cerulopl...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi051559k

    authors: Griffiths TA,Mauk AG,MacGillivray RT

    更新日期:2005-11-15 00:00:00

  • Mycobacterium tuberculosis Rv0899 adopts a mixed alpha/beta-structure and does not form a transmembrane beta-barrel.

    abstract::The membrane protein Rv0899 (OmpATb) from Mycobacterium tuberculosis, has been proposed to act as an outer membrane porin and to contribute to the bacterium's adaptation to the acidic environment of the phagosome during infection. The gene is restricted to pathogenic mycobacteria and, thus, is an attractive candidate ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi100158s

    authors: Teriete P,Yao Y,Kolodzik A,Yu J,Song H,Niederweis M,Marassi FM

    更新日期:2010-04-06 00:00:00

  • Intersubunit association induces unique allosteric dependence of the T127L CRP mutant on pH.

    abstract::The allosteric activation of the T127-->L mutant of 3',5'-cyclic adenosine monophosphate (cAMP) receptor protein (CRP) by cAMP changes from an exothermic, independent two-site binding mechanism at pH 7.0 to an endothermic, interacting two-site binding mechanism at pH 5.2, similar to that observed for CRP at pH 7.0 and...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi000225m

    authors: Shi Y,Wang S,Schwarz FP

    更新日期:2000-06-20 00:00:00

  • Involvement of tryptophan residues at the coenzyme A binding site of carbon monoxide dehydrogenase from Clostridium thermoaceticum.

    abstract::Carbon monoxide dehydrogenase (CODH) from Clostridium thermoaceticum plays a central role in the newly discovered acetyl-CoA pathway [Wood, H.G., Ragsdale, S.W., & Pezacka, E. (1986) FEMS Microbiol. Rev. 39, 345-362]. The enzyme catalyzes the formation of acetyl-CoA from methyl, carbonyl, and CoA groups, and it has sp...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00417a045

    authors: Shanmugasundaram T,Kumar GK,Wood HG

    更新日期:1988-08-23 00:00:00

  • Molecular basis for the catalytic specificity of the CTX-M extended-spectrum β-lactamases.

    abstract::Extended-spectrum β-lactamases (ESBLs) pose a threat to public health because of their ability to confer resistance to extended-spectrum cephalosporins such as cefotaxime. The CTX-M β-lactamases are the most widespread ESBL enzymes among antibiotic resistant bacteria. Many of the active site residues are conserved bet...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi501195g

    authors: Adamski CJ,Cardenas AM,Brown NG,Horton LB,Sankaran B,Prasad BV,Gilbert HF,Palzkill T

    更新日期:2015-01-20 00:00:00

  • Binding specificity of multiprotein signaling complexes is determined by both cooperative interactions and affinity preferences.

    abstract::The generation of multiprotein complexes at receptors and adapter proteins is crucial for the activation of intracellular signaling pathways. In this study, we used multiple biochemical and biophysical methods to examine the binding properties of several SH2 and SH3 domain-containing signaling proteins as they interac...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0357311

    authors: Houtman JC,Higashimoto Y,Dimasi N,Cho S,Yamaguchi H,Bowden B,Regan C,Malchiodi EL,Mariuzza R,Schuck P,Appella E,Samelson LE

    更新日期:2004-04-13 00:00:00

  • Evaluation of number average length analysis in quantifying double strand breaks in genomic DNAs.

    abstract::Double strand breaks in DNA can be quantified down to very low frequencies (a few per Gigabase pair) in nanogram quantities of nonradioactive, genomic DNA by dispersing the DNAs on electrophoretic gels, digitizing them by quantitative electronic imaging, and calculating the DNA lengths by number average length analysi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0205505

    authors: Sutherland BM,Bennett PV,Georgakilas AG,Sutherland JC

    更新日期:2003-03-25 00:00:00

  • CHOBIMALT: a cholesterol-based detergent.

    abstract::Cholesterol and its hemisuccinate and sulfate derivatives are widely used in studies of purified membrane proteins but are difficult to solubilize in aqueous solution, even in the presence of detergent micelles. Other cholesterol derivatives do not form conventional micelles and lead to viscous solutions. To address t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi101334j

    authors: Howell SC,Mittal R,Huang L,Travis B,Breyer RM,Sanders CR

    更新日期:2010-11-09 00:00:00

  • Prion protein peptides induce alpha-helix to beta-sheet conformational transitions.

    abstract::The structures of synthetic peptides corresponding to regions of putative secondary structure in the cellular prion protein PrPC were studied as models for the conformational transition that features in the formation of the pathogenic isoform, PrPSc. Transgenetic studies argue that these PrP isoforms interact during t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00013a006

    authors: Nguyen J,Baldwin MA,Cohen FE,Prusiner SB

    更新日期:1995-04-04 00:00:00

  • Analysis of neuronal NO synthase under single-turnover conditions: conversion of Nomega-hydroxyarginine to nitric oxide and citrulline.

    abstract::Nitric oxide synthases (NOSs) are proposed to generate NO and citrulline from L-arginine in two steps: initial N-hydroxylation to generate Nomega-hydroxyarginine (NOHA) followed by a three-electron oxidation of the hydroxylated nitrogen to form products. Both steps consume NADPH and may involve heme iron-based activat...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi971414g

    authors: Abu-Soud HM,Presta A,Mayer B,Stuehr DJ

    更新日期:1997-09-09 00:00:00

  • The histone binding protein nucleoplasmin does not facilitate binding of transcription factor IIIA to nucleosomal Xenopus laevis 5S rRNA genes.

    abstract::In an attempt to understand the mechanism by which transcription factors compete with histone octamers for cognate binding sites in chromatin, the effect of the histone binding protein nucleoplasmin on the binding of TFIIIA to nucleosomal 5S rRNA genes was tested. In this study, it was shown that, despite the previous...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi972723+

    authors: Howe L,Itoh T,Katagiri C,Ausio J

    更新日期:1998-02-03 00:00:00

  • Redox-dependent structural differences in putidaredoxin derived from homologous structure refinement via residual dipolar couplings.

    abstract::Structural differences in the [2Fe-2S] ferredoxin, putidaredoxin (Pdx), from the camphor hydroxylation pathway of Pseudomonas putida have been investigated as a function of oxidation state of the iron cluster. Pdx is involved in biological electron transfer to cytochrome P450(cam) (CYP101). Redox-dependent differences...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi050152c

    authors: Jain NU,Tjioe E,Savidor A,Boulie J

    更新日期:2005-06-28 00:00:00

  • LNA (locked nucleic acid): high-affinity targeting of complementary RNA and DNA.

    abstract::Locked nucleic acid (LNA) is a nucleic acid analogue containing one or more LNA nucleotide monomers with a bicyclic furanose unit locked in an RNA mimicking sugar conformation. LNA oligonucleotides display unprecedented hybridization affinity toward complementary single-stranded RNA and complementary single- or double...

    journal_title:Biochemistry

    pub_type: 杂志文章,评审

    doi:10.1021/bi0485732

    authors: Vester B,Wengel J

    更新日期:2004-10-26 00:00:00

  • Truncation of the amino terminus of human apolipoprotein A-I substantially alters only the lipid-free conformation.

    abstract::An amino-terminal deletion mutant (residues 1-43) of human apolipoprotein A-I (apo hA-I) has been produced from a bacterial expression system to explore the structural and functional role of these amino acids, encoded by exon 3, in apo hA-I. Lipid binding of apo delta (1-43)A-I and lipid binding of apo hA-I are very s...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi961876e

    authors: Rogers DP,Brouillette CG,Engler JA,Tendian SW,Roberts L,Mishra VK,Anantharamaiah GM,Lund-Katz S,Phillips MC,Ray MJ

    更新日期:1997-01-14 00:00:00